Wall clock time and date at job start Tue Mar 31 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.48966 * 2 1 4 4 C 1.53083 * 109.48169 * 120.03375 * 2 1 3 5 5 C 1.53175 * 109.21739 * 62.34108 * 4 2 1 6 6 H 1.08996 * 109.54581 * 297.14812 * 5 4 2 7 7 N 1.46502 * 109.54221 * 176.87899 * 5 4 2 8 8 C 1.39678 * 119.99648 * 155.00364 * 7 5 4 9 9 C 1.39004 * 120.04159 * 359.72057 * 8 7 5 10 10 C 1.38149 * 120.06359 * 179.69876 * 9 8 7 11 11 C 1.38171 * 120.13900 * 0.60428 * 10 9 8 12 12 C 1.38911 * 120.08262 * 359.67415 * 11 10 9 13 13 O 1.35752 * 120.03877 * 180.02562 * 12 11 10 14 14 C 1.34832 * 117.00638 * 174.48490 * 13 12 11 15 15 H 1.08002 * 119.99218 * 5.05706 * 14 13 12 16 16 C 1.38650 * 120.00056 * 185.05992 * 14 13 12 17 17 N 1.31557 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46884 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47245 * 119.99753 * 18 16 14 21 21 H 1.48504 * 109.46701 * 239.99831 * 18 16 14 22 22 C 1.38754 * 120.03848 * 180.02562 * 8 7 5 23 23 C 1.53313 * 108.96586 * 56.95451 * 5 4 2 24 24 C 1.53094 * 109.19536 * 303.05913 * 23 5 4 25 25 O 1.42903 * 109.41725 * 57.60420 * 24 23 5 26 26 H 1.08997 * 109.47019 * 299.96564 * 1 2 3 27 27 H 1.09004 * 109.46890 * 59.97062 * 1 2 3 28 28 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47135 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47078 * 300.03603 * 3 2 1 31 31 H 1.09001 * 109.46679 * 60.02727 * 3 2 1 32 32 H 1.09000 * 109.52317 * 182.28438 * 4 2 1 33 33 H 1.09007 * 109.52444 * 302.40450 * 4 2 1 34 34 H 0.96998 * 120.00144 * 335.00130 * 7 5 4 35 35 H 1.08003 * 119.96570 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.93360 * 180.28057 * 10 9 8 37 37 H 1.08007 * 119.96247 * 179.70099 * 11 10 9 38 38 H 0.97000 * 119.99843 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.06676 * 0.02562 * 22 8 7 40 40 H 1.08999 * 109.50552 * 183.13977 * 23 5 4 41 41 H 1.09002 * 109.55692 * 63.00169 * 23 5 4 42 42 H 1.09002 * 109.47813 * 297.62809 * 24 23 5 43 43 H 1.08996 * 109.47980 * 177.59351 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2494 5 6 1.5758 -2.1814 1.2136 6 1 0.4868 -2.2180 1.2422 7 7 2.1225 -2.8984 2.3682 8 6 1.4714 -4.0329 2.8580 9 6 0.3015 -4.4790 2.2542 10 6 -0.3394 -5.6046 2.7344 11 6 0.1730 -6.2833 3.8235 12 6 1.3386 -5.8394 4.4350 13 8 1.8415 -6.5071 5.5046 14 6 3.0336 -6.0933 5.9795 15 1 3.5050 -5.2150 5.5637 16 6 3.6543 -6.7952 7.0015 17 7 3.0798 -7.8647 7.5083 18 14 5.3056 -6.2213 7.6599 19 1 5.7342 -5.0029 6.9271 20 1 5.1809 -5.9112 9.1067 21 1 6.3145 -7.2941 7.4687 22 6 1.9882 -4.7124 3.9519 23 6 2.0765 -2.8322 -0.0811 24 6 1.5646 -2.0284 -1.2793 25 8 2.0066 -0.6741 -1.1665 26 1 -0.3633 0.5133 0.8903 27 1 -0.3633 0.5143 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1305 1.4420 -0.0005 30 1 1.6768 1.9565 -0.8897 31 1 1.6777 1.9561 0.8903 32 1 3.1298 -0.6874 1.2708 33 1 1.6431 -0.2352 2.1399 34 1 2.9367 -2.5853 2.7925 35 1 -0.1043 -3.9476 1.4061 36 1 -1.2458 -5.9519 2.2609 37 1 -0.3331 -7.1602 4.1995 38 1 3.5139 -8.3555 8.2235 39 1 2.8941 -4.3648 4.4261 40 1 1.7038 -3.8547 -0.1423 41 1 3.1665 -2.8409 -0.0873 42 1 0.4750 -2.0549 -1.2959 43 1 1.9531 -2.4621 -2.2007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070353116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:58 Heat of formation + Delta-G solvation = -73.300438 kcal Electronic energy + Delta-G solvation = -23359.970787 eV Core-core repulsion = 19983.636281 eV Total energy + Delta-G solvation = -3376.334506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30270 -40.57340 -38.65454 -36.40834 -34.55878 -34.24159 -33.02376 -30.57064 -29.90405 -28.42105 -28.18711 -27.20909 -24.95131 -23.39081 -23.21185 -21.76619 -20.30989 -19.69918 -19.03569 -17.49881 -17.15562 -16.89753 -16.72351 -16.16036 -16.03499 -15.67460 -15.51674 -15.37973 -15.04376 -14.73853 -14.44212 -14.10688 -13.90850 -13.53246 -13.48957 -13.26159 -12.96402 -12.84743 -12.74395 -12.63813 -12.51903 -12.38234 -12.12015 -12.09096 -12.00633 -11.81760 -11.34136 -11.09500 -10.89499 -10.60050 -10.48184 -9.11766 -8.46215 -8.25421 -6.14501 0.75578 0.90826 1.33501 1.42981 1.51817 2.17539 2.44210 2.83826 2.88458 3.25436 3.58041 3.63028 3.82577 3.84369 4.05161 4.07284 4.21933 4.26081 4.31667 4.41273 4.45743 4.60751 4.64181 4.70943 4.75131 4.80314 4.86481 4.89246 4.94593 5.01596 5.08774 5.10269 5.14164 5.16047 5.19617 5.33183 5.40506 5.46055 5.74984 5.79831 6.03239 6.11082 6.33839 6.58797 6.83013 6.99281 7.82627 8.77671 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.003542 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.025252 B = 7902.439504 C = 8735.463234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.154 3.846 6 H 0.087 0.913 7 N -0.740 5.740 8 C 0.258 3.742 9 C -0.264 4.264 10 C -0.025 4.025 11 C -0.262 4.262 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.410 4.410 15 H 0.098 0.902 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.253 1.253 20 H -0.267 1.267 21 H -0.268 1.268 22 C -0.317 4.317 23 C -0.168 4.168 24 C 0.063 3.937 25 O -0.390 6.390 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.397 0.603 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 17.773 -17.224 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 C -0.194 4.194 4 C -0.183 4.183 5 C 0.049 3.951 6 H 0.104 0.896 7 N -0.368 5.368 8 C 0.155 3.845 9 C -0.286 4.286 10 C -0.044 4.044 11 C -0.283 4.283 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.486 4.486 15 H 0.116 0.884 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.177 1.177 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.341 4.341 23 C -0.207 4.207 24 C -0.014 4.014 25 O -0.309 6.309 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.527 17.618 -17.233 24.896 hybrid contribution 1.019 -0.461 1.138 1.595 sum -2.508 17.157 -16.095 23.658 Atomic orbital electron populations 1.22486 0.94608 1.03034 1.03691 1.21549 0.93975 0.93176 0.83950 1.21778 1.01727 0.92433 1.03463 1.22452 1.02080 0.94202 0.99616 1.21049 0.98754 0.90862 0.84440 0.89564 1.44762 1.29515 1.28259 1.34296 1.17538 0.90977 0.86016 0.90005 1.20541 0.98736 1.02588 1.06764 1.20828 0.98188 0.92861 0.92493 1.20268 0.99242 1.05761 1.02984 1.19637 0.93139 0.90648 0.86355 1.83947 1.35611 1.54192 1.40141 1.21819 0.95163 1.12733 1.18923 0.88423 1.26576 1.03764 0.95473 0.96289 1.70195 1.40709 1.18529 1.26598 0.84537 0.74699 0.78686 0.78297 1.17675 1.19218 1.19322 1.20515 1.06416 1.02348 1.04845 1.22710 1.01782 1.00613 0.95626 1.22635 0.99605 0.81240 0.97928 1.87956 1.74235 1.25162 1.43574 0.90441 0.91068 0.91898 0.92271 0.91264 0.89669 0.91105 0.89725 0.76816 0.84182 0.82975 0.87568 0.91882 0.87042 0.90851 0.92079 0.91452 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 7.94 71.98 0.57 -1.81 16 2 C 0.11 1.78 1.11 -10.76 -0.01 1.77 16 3 C -0.14 -1.77 8.85 71.98 0.64 -1.13 16 4 C -0.15 -2.55 4.39 30.68 0.13 -2.42 16 5 C 0.15 3.22 1.93 45.15 0.09 3.31 16 6 H 0.09 1.76 4.94 -2.39 -0.01 1.75 16 7 N -0.74 -20.46 5.26 -318.23 -1.67 -22.13 16 8 C 0.26 9.23 6.64 38.20 0.25 9.48 16 9 C -0.26 -8.43 8.96 22.43 0.20 -8.23 16 10 C -0.03 -0.86 10.03 22.23 0.22 -0.64 16 11 C -0.26 -11.63 9.99 22.42 0.22 -11.40 16 12 C 0.15 7.95 6.64 22.56 0.15 8.10 16 13 O -0.23 -14.47 9.76 -22.78 -0.22 -14.69 16 14 C -0.41 -24.57 9.49 67.92 0.64 -23.92 16 15 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 17 N -0.92 -57.69 13.67 21.61 0.30 -57.39 16 18 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 19 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 C -0.32 -14.38 9.01 22.52 0.20 -14.18 16 23 C -0.17 -3.38 5.71 30.73 0.18 -3.21 16 24 C 0.06 1.04 6.52 72.01 0.47 1.50 16 25 O -0.39 -7.43 10.24 -148.98 -1.52 -8.96 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.85 4.98 -2.38 -0.01 0.84 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.40 10.63 8.62 -92.71 -0.80 9.83 16 35 H 0.14 3.49 6.15 -2.91 -0.02 3.47 16 36 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 40 H 0.07 1.59 7.84 -2.39 -0.02 1.57 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 0.94 6.34 -2.39 -0.02 0.93 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.62 339.89 3.55 -69.07 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.22 Total: 31.99 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 4.43 Total: -43.71 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.38 Total: -79.52 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.75 Total: -23.65 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.62 3.55 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds