Wall clock time and date at job start Tue Mar 31 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.48916 * 2 1 4 4 C 1.53100 * 109.40898 * 240.01181 * 2 1 3 5 5 C 1.53174 * 109.15756 * 297.49315 * 4 2 1 6 6 H 1.09001 * 109.54092 * 63.06532 * 5 4 2 7 7 N 1.46502 * 109.54472 * 183.23937 * 5 4 2 8 8 C 1.39674 * 120.00105 * 204.82347 * 7 5 4 9 9 C 1.39003 * 120.03719 * 359.97438 * 8 7 5 10 10 C 1.38149 * 120.05733 * 180.02562 * 9 8 7 11 11 C 1.38171 * 120.14896 * 359.70570 * 10 9 8 12 12 C 1.38923 * 120.07188 * 0.55188 * 11 10 9 13 13 O 1.35754 * 120.02686 * 179.74828 * 12 11 10 14 14 C 1.34828 * 116.99624 * 185.26311 * 13 12 11 15 15 H 1.08001 * 120.00352 * 354.93181 * 14 13 12 16 16 C 1.38649 * 120.00168 * 174.94371 * 14 13 12 17 17 N 1.31565 * 119.99860 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46760 * 59.99841 * 18 16 14 20 20 H 1.48494 * 109.47028 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47158 * 299.99821 * 18 16 14 22 22 C 1.38750 * 120.04062 * 179.97438 * 8 7 5 23 23 C 1.53175 * 109.11053 * 303.15167 * 5 4 2 24 24 C 1.53087 * 109.16254 * 56.93477 * 23 5 4 25 25 O 1.42897 * 109.48275 * 120.02343 * 2 1 3 26 26 H 1.08994 * 109.47084 * 299.97029 * 1 2 3 27 27 H 1.08994 * 109.46977 * 59.97693 * 1 2 3 28 28 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47354 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47191 * 300.02774 * 3 2 1 31 31 H 1.08998 * 109.47569 * 60.02539 * 3 2 1 32 32 H 1.09002 * 109.45662 * 177.62878 * 4 2 1 33 33 H 1.09006 * 109.59426 * 57.44073 * 4 2 1 34 34 H 0.97003 * 119.99773 * 24.82328 * 7 5 4 35 35 H 1.07999 * 119.97101 * 0.02562 * 9 8 7 36 36 H 1.08006 * 119.92577 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.96662 * 180.27215 * 11 10 9 38 38 H 0.96997 * 120.00069 * 0.02562 * 17 16 14 39 39 H 1.08004 * 120.06677 * 0.02562 * 22 8 7 40 40 H 1.08998 * 109.52289 * 176.84519 * 23 5 4 41 41 H 1.09004 * 109.52111 * 297.03209 * 23 5 4 42 42 H 1.08996 * 109.48486 * 62.37742 * 24 23 5 43 43 H 1.08999 * 109.48125 * 182.40982 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0388 -0.7217 -1.2507 5 6 1.5758 -2.1813 -1.2120 6 1 0.4869 -2.2193 -1.2415 7 7 2.1226 -2.8996 -2.3659 8 6 1.4746 -4.0379 -2.8511 9 6 0.3112 -4.4901 -2.2395 10 6 -0.3297 -5.6162 -2.7187 11 6 0.1795 -6.2928 -3.8105 12 6 1.3449 -5.8490 -4.4229 13 8 1.8472 -6.5175 -5.4923 14 6 3.0366 -6.1004 -5.9713 15 1 3.5059 -5.2194 -5.5589 16 6 3.6571 -6.8023 -6.9933 17 7 3.0856 -7.8756 -7.4955 18 14 5.3045 -6.2240 -7.6574 19 1 6.3073 -6.2238 -6.5620 20 1 5.7519 -7.1398 -8.7373 21 1 5.1643 -4.8489 -8.2003 22 6 1.9915 -4.7185 -3.9442 23 6 2.0765 -2.8322 0.0810 24 6 1.5646 -2.0284 1.2791 25 8 2.0066 -0.6741 1.1664 26 1 -0.3633 0.5133 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1305 1.4421 -0.0005 30 1 1.6769 1.9565 -0.8898 31 1 1.6777 1.9562 0.8902 32 1 3.1280 -0.6855 -1.2730 33 1 1.6390 -0.2362 -2.1410 34 1 2.9347 -2.5847 -2.7929 35 1 -0.0920 -3.9607 -1.3889 36 1 -1.2334 -5.9659 -2.2416 37 1 -0.3263 -7.1702 -4.1854 38 1 2.2299 -8.1757 -7.1510 39 1 2.8955 -4.3694 -4.4209 40 1 1.7038 -3.8546 0.1422 41 1 3.1665 -2.8399 0.0865 42 1 0.4751 -2.0549 1.2959 43 1 1.9531 -2.4621 2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070353117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:02 Heat of formation + Delta-G solvation = -59.503921 kcal Electronic energy + Delta-G solvation = -23392.913012 eV Core-core repulsion = 20017.176768 eV Total energy + Delta-G solvation = -3375.736244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40109 -39.03678 -37.16842 -35.14915 -33.84229 -32.26869 -31.80084 -29.08978 -28.64210 -27.63681 -27.20287 -24.83046 -24.04151 -22.23211 -21.70055 -20.46173 -19.46153 -18.24775 -17.40625 -16.42612 -16.34321 -15.53819 -15.34309 -14.86766 -14.84351 -14.43978 -14.14059 -13.85703 -13.75173 -13.61871 -13.24322 -13.06362 -12.71051 -12.53098 -12.40629 -12.15214 -11.96380 -11.89477 -11.44659 -11.36587 -11.11189 -11.04527 -10.80540 -10.61224 -10.43248 -10.28246 -10.25839 -9.71747 -9.44726 -9.41673 -8.70458 -7.42532 -6.84186 -6.72869 -4.02400 2.31516 2.49640 3.24456 3.29940 3.46217 3.48203 3.67077 4.14760 4.41639 4.54110 4.59769 4.72936 4.76632 4.96041 5.01230 5.13584 5.16687 5.18673 5.26429 5.29732 5.38899 5.46827 5.49239 5.59066 5.64802 5.70151 5.79473 5.80792 5.90179 5.96494 5.97758 6.16074 6.19902 6.32807 6.56478 6.59221 6.97671 7.05546 7.20903 7.31555 7.52871 7.66685 7.95570 8.13652 8.45699 8.97327 9.67715 10.71381 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.003555 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.337036 B = 7874.727868 C = 8711.713918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.150 4.150 5 C 0.157 3.843 6 H 0.080 0.920 7 N -0.748 5.748 8 C 0.251 3.749 9 C -0.280 4.280 10 C -0.039 4.039 11 C -0.240 4.240 12 C 0.193 3.807 13 O -0.203 6.203 14 C -0.470 4.470 15 H 0.082 0.918 16 C 0.009 3.991 17 N -0.884 5.884 18 Si 1.095 2.905 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.282 1.282 22 C -0.299 4.299 23 C -0.172 4.172 24 C 0.061 3.939 25 O -0.375 6.375 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.394 0.606 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.282 0.718 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 15.553 15.384 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.188 4.188 5 C 0.051 3.949 6 H 0.098 0.902 7 N -0.378 5.378 8 C 0.150 3.850 9 C -0.302 4.302 10 C -0.058 4.058 11 C -0.261 4.261 12 C 0.139 3.861 13 O -0.107 6.107 14 C -0.546 4.546 15 H 0.100 0.900 16 C -0.196 4.196 17 N -0.516 5.516 18 Si 0.919 3.081 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.208 1.208 22 C -0.322 4.322 23 C -0.212 4.212 24 C -0.016 4.016 25 O -0.294 6.294 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.263 15.127 14.352 20.974 hybrid contribution -0.997 0.357 0.866 1.368 sum -3.260 15.484 15.218 21.953 Atomic orbital electron populations 1.22491 0.95635 1.02932 1.02886 1.21412 0.93170 0.92794 0.85004 1.21755 1.02001 0.93179 1.02511 1.22482 1.02295 0.95386 0.98672 1.20807 0.98541 0.90066 0.85511 0.90172 1.44607 1.30080 1.29165 1.33978 1.17466 0.90737 0.85511 0.91274 1.20091 1.00219 1.03286 1.06644 1.20368 0.97395 0.93729 0.94329 1.20019 0.99530 1.04962 1.01549 1.18916 0.91671 0.89660 0.85861 1.83675 1.35572 1.52940 1.38481 1.22169 0.96086 1.14500 1.21839 0.90034 1.26502 1.04911 0.94547 0.93649 1.70569 1.18637 1.21553 1.40844 0.83117 0.72436 0.75825 0.76677 1.20829 1.19790 1.20825 1.20514 1.06523 1.01922 1.03288 1.22746 1.02484 1.00741 0.95189 1.22579 0.98795 0.81862 0.98368 1.87958 1.73767 1.24746 1.42944 0.91718 0.91300 0.91709 0.91766 0.91049 0.91741 0.90672 0.90309 0.77165 0.87829 0.87168 0.87095 0.90812 0.85723 0.90178 0.90935 0.92825 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 7.93 37.16 0.29 -1.23 16 2 C 0.12 1.08 1.11 -90.57 -0.10 0.98 16 3 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 4 C -0.15 -1.52 4.40 -26.59 -0.12 -1.64 16 5 C 0.16 1.88 1.91 -67.75 -0.13 1.75 16 6 H 0.08 0.99 4.97 -51.93 -0.26 0.73 16 7 N -0.75 -11.15 5.26 -52.01 -0.27 -11.42 16 8 C 0.25 4.71 6.64 -83.81 -0.56 4.15 16 9 C -0.28 -4.94 8.89 -39.33 -0.35 -5.29 16 10 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 11 C -0.24 -5.22 9.99 -39.35 -0.39 -5.61 16 12 C 0.19 4.80 6.64 -39.14 -0.26 4.54 16 13 O -0.20 -5.85 9.16 0.04 0.00 -5.85 16 14 C -0.47 -13.48 9.49 30.88 0.29 -13.19 16 15 H 0.08 2.21 5.20 -52.49 -0.27 1.93 16 16 C 0.01 0.25 5.49 -17.51 -0.10 0.16 16 17 N -0.88 -26.80 13.70 55.48 0.76 -26.04 16 18 Si 1.10 24.04 29.92 -169.99 -5.09 18.95 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 22 C -0.30 -6.71 9.01 -39.20 -0.35 -7.06 16 23 C -0.17 -1.97 5.67 -26.60 -0.15 -2.12 16 24 C 0.06 0.60 6.52 37.20 0.24 0.84 16 25 O -0.37 -4.10 10.24 -35.23 -0.36 -4.46 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 5.57 8.62 -40.82 -0.35 5.22 16 35 H 0.10 1.56 6.08 -52.49 -0.32 1.25 16 36 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.28 8.75 7.97 -40.82 -0.33 8.42 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 40 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.48 6.34 -51.93 -0.33 0.15 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -31.64 339.05 -7.85 -39.49 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.26 Total: 9.79 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -1.75 Total: -25.57 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.49 Total: -37.46 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.36 Total: -10.31 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.09 Total: 18.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.64 -7.85 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.015 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds