Wall clock time and date at job start Tue Mar 31 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.48916 * 2 1 4 4 C 1.53100 * 109.40898 * 240.01181 * 2 1 3 5 5 C 1.53174 * 109.15756 * 297.49315 * 4 2 1 6 6 H 1.09001 * 109.54092 * 63.06532 * 5 4 2 7 7 N 1.46502 * 109.54472 * 183.23937 * 5 4 2 8 8 C 1.39674 * 120.00105 * 204.82347 * 7 5 4 9 9 C 1.39003 * 120.03719 * 359.97438 * 8 7 5 10 10 C 1.38149 * 120.05733 * 180.02562 * 9 8 7 11 11 C 1.38171 * 120.14896 * 359.70570 * 10 9 8 12 12 C 1.38923 * 120.07188 * 0.55188 * 11 10 9 13 13 O 1.35754 * 120.02686 * 179.74828 * 12 11 10 14 14 C 1.34828 * 116.99624 * 185.26311 * 13 12 11 15 15 H 1.08001 * 120.00352 * 354.93181 * 14 13 12 16 16 C 1.38649 * 120.00168 * 174.94371 * 14 13 12 17 17 N 1.31565 * 119.99860 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46760 * 59.99841 * 18 16 14 20 20 H 1.48494 * 109.47028 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47158 * 299.99821 * 18 16 14 22 22 C 1.38750 * 120.04062 * 179.97438 * 8 7 5 23 23 C 1.53175 * 109.11053 * 303.15167 * 5 4 2 24 24 C 1.53087 * 109.16254 * 56.93477 * 23 5 4 25 25 O 1.42897 * 109.48275 * 120.02343 * 2 1 3 26 26 H 1.08994 * 109.47084 * 299.97029 * 1 2 3 27 27 H 1.08994 * 109.46977 * 59.97693 * 1 2 3 28 28 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47354 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47191 * 300.02774 * 3 2 1 31 31 H 1.08998 * 109.47569 * 60.02539 * 3 2 1 32 32 H 1.09002 * 109.45662 * 177.62878 * 4 2 1 33 33 H 1.09006 * 109.59426 * 57.44073 * 4 2 1 34 34 H 0.97003 * 119.99773 * 24.82328 * 7 5 4 35 35 H 1.07999 * 119.97101 * 0.02562 * 9 8 7 36 36 H 1.08006 * 119.92577 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.96662 * 180.27215 * 11 10 9 38 38 H 0.96997 * 120.00069 * 0.02562 * 17 16 14 39 39 H 1.08004 * 120.06677 * 0.02562 * 22 8 7 40 40 H 1.08998 * 109.52289 * 176.84519 * 23 5 4 41 41 H 1.09004 * 109.52111 * 297.03209 * 23 5 4 42 42 H 1.08996 * 109.48486 * 62.37742 * 24 23 5 43 43 H 1.08999 * 109.48125 * 182.40982 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0388 -0.7217 -1.2507 5 6 1.5758 -2.1813 -1.2120 6 1 0.4869 -2.2193 -1.2415 7 7 2.1226 -2.8996 -2.3659 8 6 1.4746 -4.0379 -2.8511 9 6 0.3112 -4.4901 -2.2395 10 6 -0.3297 -5.6162 -2.7187 11 6 0.1795 -6.2928 -3.8105 12 6 1.3449 -5.8490 -4.4229 13 8 1.8472 -6.5175 -5.4923 14 6 3.0366 -6.1004 -5.9713 15 1 3.5059 -5.2194 -5.5589 16 6 3.6571 -6.8023 -6.9933 17 7 3.0856 -7.8756 -7.4955 18 14 5.3045 -6.2240 -7.6574 19 1 6.3073 -6.2238 -6.5620 20 1 5.7519 -7.1398 -8.7373 21 1 5.1643 -4.8489 -8.2003 22 6 1.9915 -4.7185 -3.9442 23 6 2.0765 -2.8322 0.0810 24 6 1.5646 -2.0284 1.2791 25 8 2.0066 -0.6741 1.1664 26 1 -0.3633 0.5133 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1305 1.4421 -0.0005 30 1 1.6769 1.9565 -0.8898 31 1 1.6777 1.9562 0.8902 32 1 3.1280 -0.6855 -1.2730 33 1 1.6390 -0.2362 -2.1410 34 1 2.9347 -2.5847 -2.7929 35 1 -0.0920 -3.9607 -1.3889 36 1 -1.2334 -5.9659 -2.2416 37 1 -0.3263 -7.1702 -4.1854 38 1 2.2299 -8.1757 -7.1510 39 1 2.8955 -4.3694 -4.4209 40 1 1.7038 -3.8546 0.1422 41 1 3.1665 -2.8399 0.0865 42 1 0.4751 -2.0549 1.2959 43 1 1.9531 -2.4621 2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070353117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:01 Heat of formation + Delta-G solvation = -79.735874 kcal Electronic energy + Delta-G solvation = -23393.790335 eV Core-core repulsion = 20017.176768 eV Total energy + Delta-G solvation = -3376.613568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35312 -40.67976 -38.78692 -36.49620 -34.58192 -34.25545 -33.07012 -30.62425 -29.92734 -28.42706 -28.20055 -26.85738 -24.99416 -23.44708 -23.24189 -21.90082 -20.37889 -20.04548 -18.98826 -17.61890 -17.18941 -16.82964 -16.70994 -16.53472 -15.81745 -15.73535 -15.59253 -15.52730 -15.08449 -14.85342 -14.66053 -14.16691 -13.93733 -13.57059 -13.30464 -12.99204 -12.94671 -12.84533 -12.65219 -12.60356 -12.47114 -12.30213 -12.11086 -12.05234 -11.94951 -11.86761 -11.40776 -11.12634 -10.89159 -10.62802 -10.50312 -9.21561 -8.93883 -8.32320 -6.24146 0.67959 0.82757 1.46678 1.59919 1.77256 2.34807 2.39866 2.81891 2.88611 3.18155 3.39366 3.59515 3.80077 3.81936 4.02495 4.04086 4.15665 4.23591 4.27816 4.37156 4.42435 4.51676 4.61028 4.67815 4.70805 4.78726 4.84072 4.86786 4.90811 4.99290 5.00883 5.06155 5.09202 5.15958 5.25158 5.31630 5.38509 5.39096 5.69934 5.79146 5.91462 6.26090 6.31994 6.52717 6.77383 6.88254 7.65818 8.51219 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.003555 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.337036 B = 7874.727868 C = 8711.713918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.153 3.847 6 H 0.087 0.913 7 N -0.739 5.739 8 C 0.259 3.741 9 C -0.261 4.261 10 C -0.025 4.025 11 C -0.262 4.262 12 C 0.155 3.845 13 O -0.252 6.252 14 C -0.485 4.485 15 H 0.088 0.912 16 C -0.045 4.045 17 N -0.919 5.919 18 Si 1.145 2.855 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.260 1.260 22 C -0.316 4.316 23 C -0.168 4.168 24 C 0.063 3.937 25 O -0.389 6.389 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.398 0.602 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.260 0.740 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 18.258 17.947 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 C -0.194 4.194 4 C -0.183 4.183 5 C 0.049 3.951 6 H 0.104 0.896 7 N -0.368 5.368 8 C 0.155 3.845 9 C -0.284 4.284 10 C -0.043 4.043 11 C -0.283 4.283 12 C 0.105 3.895 13 O -0.160 6.160 14 C -0.561 4.561 15 H 0.106 0.894 16 C -0.241 4.241 17 N -0.554 5.554 18 Si 0.960 3.040 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.339 4.339 23 C -0.207 4.207 24 C -0.014 4.014 25 O -0.309 6.309 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.905 17.899 16.991 24.850 hybrid contribution -0.977 -0.289 0.393 1.092 sum -3.882 17.610 17.384 25.048 Atomic orbital electron populations 1.22487 0.94613 1.03021 1.03712 1.21548 0.93976 0.93191 0.83930 1.21780 1.01746 0.92401 1.03480 1.22457 1.02130 0.94108 0.99648 1.21047 0.98754 0.90911 0.84412 0.89566 1.44787 1.29772 1.27836 1.34358 1.17540 0.90995 0.86018 0.89935 1.20577 0.98806 1.02438 1.06545 1.20851 0.98205 0.92851 0.92397 1.20278 0.99116 1.05876 1.03054 1.19530 0.93161 0.90759 0.86079 1.83652 1.36274 1.54975 1.41069 1.22549 0.96602 1.14842 1.22144 0.89431 1.28381 1.08134 0.93892 0.93712 1.70708 1.18385 1.23740 1.42540 0.82595 0.68310 0.76360 0.76705 1.18640 1.19689 1.18452 1.20530 1.06430 1.02114 1.04870 1.22687 1.01813 1.00609 0.95624 1.22636 0.99615 0.81245 0.97913 1.87960 1.74226 1.25146 1.43548 0.91048 0.90439 0.91916 0.92251 0.89659 0.91246 0.91069 0.89681 0.76785 0.83985 0.82752 0.87399 0.93189 0.87136 0.90841 0.92058 0.91426 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 7.93 71.98 0.57 -1.78 16 2 C 0.11 1.75 1.11 -10.76 -0.01 1.74 16 3 C -0.14 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.15 -2.52 4.40 30.69 0.13 -2.39 16 5 C 0.15 3.18 1.91 45.11 0.09 3.27 16 6 H 0.09 1.73 4.97 -2.39 -0.01 1.72 16 7 N -0.74 -20.37 5.26 -318.46 -1.67 -22.04 16 8 C 0.26 9.23 6.64 38.20 0.25 9.49 16 9 C -0.26 -8.26 8.89 22.43 0.20 -8.06 16 10 C -0.02 -0.83 10.03 22.23 0.22 -0.60 16 11 C -0.26 -11.48 9.99 22.42 0.22 -11.26 16 12 C 0.16 8.02 6.64 22.56 0.15 8.17 16 13 O -0.25 -15.52 9.16 -22.76 -0.21 -15.73 16 14 C -0.49 -29.28 9.49 67.92 0.64 -28.64 16 15 H 0.09 4.96 5.20 -2.91 -0.02 4.94 16 16 C -0.05 -2.67 5.49 84.83 0.47 -2.21 16 17 N -0.92 -58.79 13.70 21.61 0.30 -58.50 16 18 Si 1.14 49.20 29.92 68.60 2.05 51.26 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 C -0.32 -14.38 9.01 22.52 0.20 -14.18 16 23 C -0.17 -3.35 5.67 30.68 0.17 -3.18 16 24 C 0.06 1.02 6.52 72.01 0.47 1.49 16 25 O -0.39 -7.34 10.24 -148.98 -1.53 -8.87 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.83 4.98 -2.38 -0.01 0.82 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.40 10.62 8.62 -92.71 -0.80 9.82 16 35 H 0.14 3.47 6.08 -2.91 -0.02 3.46 16 36 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.26 17.34 7.97 -92.71 -0.74 16.60 16 39 H 0.11 5.24 5.64 -2.91 -0.02 5.23 16 40 H 0.07 1.57 7.71 -2.39 -0.02 1.55 16 41 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 0.93 6.34 -2.39 -0.02 0.91 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.41 339.05 3.62 -69.79 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.25 Total: 33.32 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 4.42 Total: -49.23 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.38 Total: -80.54 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.73 Total: -24.60 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.26 kcal Total: -73.41 3.62 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.942 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds