Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47391 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99590 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00303 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00350 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47438 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47240 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47231 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99682 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99984 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00305 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47302 * 59.99718 * 20 18 16 22 22 H 1.48494 * 109.47216 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47020 * 299.99879 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 0.97001 * 119.99948 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46653 * 300.00221 * 13 12 10 37 37 H 1.09008 * 109.46555 * 59.99753 * 13 12 10 38 38 H 1.09003 * 109.47171 * 300.00259 * 14 13 12 39 39 H 1.09002 * 109.47269 * 59.99619 * 14 13 12 40 40 H 1.08998 * 109.47132 * 299.99619 * 15 14 13 41 41 H 1.08997 * 109.47536 * 60.00010 * 15 14 13 42 42 H 0.97000 * 120.00136 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.7844 -3.6268 -0.0178 11 8 8.3334 -2.5454 -0.0127 12 7 8.5201 -4.7560 -0.0236 13 6 9.9830 -4.6773 -0.0234 14 6 10.5699 -6.0902 -0.0301 15 6 12.0976 -6.0079 -0.0291 16 6 12.6756 -7.3996 -0.0351 17 1 12.0189 -8.2571 -0.0387 18 6 14.0428 -7.5783 -0.0359 19 7 14.8424 -6.5342 -0.0309 20 14 14.7593 -9.3034 -0.0440 21 1 14.3027 -10.0234 -1.2599 22 1 16.2421 -9.2236 -0.0442 23 1 14.3026 -10.0347 1.1651 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.0810 -5.6210 -0.0281 36 1 10.3180 -4.1400 -0.9106 37 1 10.3182 -4.1492 0.8694 38 1 10.2347 -6.6270 0.8574 39 1 10.2346 -6.6187 -0.9225 40 1 12.4330 -5.4710 -0.9164 41 1 12.4325 -5.4796 0.8635 42 1 15.8042 -6.6599 -0.0319 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -80.609185 kcal Electronic energy + Delta-G solvation = -21258.584356 eV Core-core repulsion = 17881.932919 eV Total energy + Delta-G solvation = -3376.651437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49537 -39.59395 -37.92472 -35.52525 -33.38505 -32.87124 -32.47017 -31.17473 -29.97093 -27.37537 -26.88015 -24.60820 -22.89389 -22.75192 -21.16453 -20.77962 -19.89885 -18.21935 -16.79987 -16.64139 -16.56289 -16.19025 -16.05841 -15.37312 -15.35846 -14.53922 -14.48075 -14.33405 -13.90929 -13.75690 -13.51956 -13.38680 -12.91837 -12.50161 -12.30561 -12.01928 -11.99958 -11.85457 -11.82767 -11.68620 -11.05440 -10.96449 -10.90679 -10.77615 -10.65200 -10.01665 -9.90647 -9.43005 -9.16130 -9.08936 -8.87894 -8.45604 -8.39439 -6.04068 -4.07514 1.02321 1.16922 2.63480 2.64536 3.30493 3.35431 3.37080 3.46383 3.55751 4.41204 4.42298 4.49807 4.59374 4.69254 4.76423 4.88868 4.93474 5.04906 5.13115 5.20590 5.23124 5.31635 5.39585 5.45732 5.45921 5.59365 5.66777 5.72224 5.77404 6.04480 6.10583 6.16138 6.28273 6.39576 6.49065 6.54597 6.76408 6.95539 7.14463 7.58514 7.60079 7.72364 7.94057 8.24678 8.35377 8.98826 9.56813 11.07097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.062442 B = 0.001781 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.307552 B =15719.872374 C =16126.523482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.213 4.213 6 C 0.138 3.862 7 O -0.318 6.318 8 C 0.075 3.925 9 C -0.141 4.141 10 C 0.513 3.487 11 O -0.547 6.547 12 N -0.723 5.723 13 C 0.115 3.885 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.061 11.955 0.074 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.180 4.180 4 C -0.094 4.094 5 C -0.232 4.232 6 C 0.093 3.907 7 O -0.232 6.232 8 C 0.000 4.000 9 C -0.181 4.181 10 C 0.299 3.701 11 O -0.425 6.425 12 N -0.373 5.373 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.174 4.174 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.510 12.576 0.075 30.248 hybrid contribution 0.607 -1.241 0.002 1.382 sum -26.903 11.334 0.077 29.193 Atomic orbital electron populations 1.20808 0.90770 1.02969 1.02558 1.19700 0.96019 0.92291 0.97100 1.20945 0.94177 0.97528 1.05395 1.20959 0.94145 0.97518 0.96756 1.21375 1.00784 0.92265 1.08780 1.18957 0.91633 0.84613 0.95540 1.85967 1.20356 1.28366 1.88506 1.22448 0.77130 0.97242 1.03171 1.21478 0.92629 0.97954 1.06043 1.20210 0.88741 0.84608 0.76588 1.90723 1.73757 1.28004 1.49993 1.46181 1.08472 1.08351 1.74309 1.21685 0.76906 1.00005 1.02104 1.21894 1.00442 0.92633 1.00945 1.19029 0.87277 0.97423 0.97677 1.21165 0.91534 0.92379 1.51211 0.92677 1.25027 0.97302 0.96873 0.95213 1.69950 1.03605 1.29300 1.50366 0.86632 0.77926 0.84682 0.78590 1.20244 1.21250 1.20238 1.20285 0.90836 0.98637 1.07691 0.90899 0.91318 0.91323 0.86023 0.85716 0.85074 0.90942 0.90950 0.87746 0.87739 0.76554 0.91648 0.91655 0.92664 0.92661 0.96258 0.96261 0.92848 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.05 -0.42 5.88 -104.64 -0.62 -1.04 16 3 C -0.16 -1.32 9.70 -39.56 -0.38 -1.71 16 4 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 5 C -0.21 -2.18 9.04 -39.44 -0.36 -2.54 16 6 C 0.14 1.49 6.69 -39.22 -0.26 1.23 16 7 O -0.32 -3.52 10.14 -19.45 -0.20 -3.71 16 8 C 0.08 0.80 4.03 37.15 0.15 0.95 16 9 C -0.14 -1.35 6.07 -27.89 -0.17 -1.52 16 10 C 0.51 6.94 7.83 -10.99 -0.09 6.85 16 11 O -0.55 -9.57 15.98 5.56 0.09 -9.48 16 12 N -0.72 -9.63 5.56 -60.30 -0.33 -9.97 16 13 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 14 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.16 -1.49 9.64 -39.43 -0.38 -1.87 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 30 H 0.13 1.29 6.30 -52.48 -0.33 0.96 16 31 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 32 H 0.07 0.79 7.62 -51.92 -0.40 0.40 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.69 364.90 -9.00 -41.70 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.92 Total: -0.14 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.85 Total: -14.33 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.69 -9.00 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.911 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds