Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47391 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99590 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00303 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00350 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47438 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47240 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47231 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99682 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99984 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00305 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99841 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47302 * 59.99718 * 20 18 16 22 22 H 1.48494 * 109.47216 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47020 * 299.99879 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 0.97001 * 119.99948 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46653 * 300.00221 * 13 12 10 37 37 H 1.09008 * 109.46555 * 59.99753 * 13 12 10 38 38 H 1.09003 * 109.47171 * 300.00259 * 14 13 12 39 39 H 1.09002 * 109.47269 * 59.99619 * 14 13 12 40 40 H 1.08998 * 109.47132 * 299.99619 * 15 14 13 41 41 H 1.08997 * 109.47536 * 60.00010 * 15 14 13 42 42 H 0.97000 * 120.00136 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.7844 -3.6268 -0.0178 11 8 8.3334 -2.5454 -0.0127 12 7 8.5201 -4.7560 -0.0236 13 6 9.9830 -4.6773 -0.0234 14 6 10.5699 -6.0902 -0.0301 15 6 12.0976 -6.0079 -0.0291 16 6 12.6756 -7.3996 -0.0351 17 1 12.0189 -8.2571 -0.0387 18 6 14.0428 -7.5783 -0.0359 19 7 14.8424 -6.5342 -0.0309 20 14 14.7593 -9.3034 -0.0440 21 1 14.3027 -10.0234 -1.2599 22 1 16.2421 -9.2236 -0.0442 23 1 14.3026 -10.0347 1.1651 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.0810 -5.6210 -0.0281 36 1 10.3180 -4.1400 -0.9106 37 1 10.3182 -4.1492 0.8694 38 1 10.2347 -6.6270 0.8574 39 1 10.2346 -6.6187 -0.9225 40 1 12.4330 -5.4710 -0.9164 41 1 12.4325 -5.4796 0.8635 42 1 15.8042 -6.6599 -0.0319 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -100.405266 kcal Electronic energy + Delta-G solvation = -21259.442779 eV Core-core repulsion = 17881.932919 eV Total energy + Delta-G solvation = -3377.509860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29578 -40.67030 -38.66105 -37.01411 -35.21086 -33.63956 -33.37292 -32.73794 -30.75534 -28.67421 -27.86670 -25.85123 -24.34180 -23.50678 -22.33023 -21.91802 -21.13296 -19.03901 -18.54015 -17.74891 -17.52225 -17.07998 -16.86685 -16.65735 -16.58298 -16.36864 -15.55856 -15.21304 -14.66114 -14.57254 -14.48065 -14.19466 -14.13074 -13.86795 -13.76759 -13.38148 -12.97161 -12.72571 -12.70827 -12.59282 -12.55831 -12.44883 -12.41078 -11.74823 -11.73201 -11.67488 -11.61196 -11.27139 -10.94394 -10.55100 -10.13682 -9.75127 -9.17832 -8.19697 -6.31428 0.34467 0.46886 1.41835 1.44719 1.52606 1.54858 1.73956 2.41009 2.56294 2.78041 3.14036 3.57828 3.86827 3.88857 3.89953 4.01901 4.15809 4.18310 4.20511 4.31160 4.40150 4.45893 4.54074 4.54497 4.69139 4.72805 4.86071 4.87703 4.93730 4.98922 5.03816 5.16545 5.24821 5.35877 5.40790 5.49490 5.51879 5.64650 5.70110 5.83667 5.84458 6.21563 6.37543 6.52302 6.85992 7.19074 7.38312 8.92035 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.062442 B = 0.001781 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.307552 B =15719.872374 C =16126.523482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.165 4.165 4 C -0.084 4.084 5 C -0.232 4.232 6 C 0.115 3.885 7 O -0.322 6.322 8 C 0.078 3.922 9 C -0.126 4.126 10 C 0.513 3.487 11 O -0.591 6.591 12 N -0.711 5.711 13 C 0.129 3.871 14 C -0.102 4.102 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.168 4.168 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.536 10.708 0.065 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.183 4.183 4 C -0.102 4.102 5 C -0.250 4.250 6 C 0.070 3.930 7 O -0.236 6.236 8 C 0.003 3.997 9 C -0.166 4.166 10 C 0.301 3.699 11 O -0.472 6.472 12 N -0.363 5.363 13 C 0.005 3.995 14 C -0.140 4.140 15 C -0.016 4.016 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.186 4.186 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -30.032 11.298 0.066 32.087 hybrid contribution 1.327 -0.759 0.006 1.529 sum -28.705 10.539 0.072 30.579 Atomic orbital electron populations 1.20871 0.88610 1.04005 1.03462 1.20095 0.97637 0.91837 0.95817 1.21298 0.94023 0.98626 1.04374 1.21246 0.94855 0.97707 0.96354 1.21475 1.00737 0.92943 1.09870 1.19233 0.92330 0.84652 0.96817 1.85929 1.20168 1.28711 1.88830 1.22353 0.77301 0.97802 1.02286 1.21401 0.88983 0.97756 1.08447 1.20868 0.90345 0.83627 0.75100 1.90713 1.74923 1.29699 1.51873 1.45932 1.06762 1.09560 1.74069 1.21245 0.79277 0.98303 1.00722 1.21598 0.96096 0.94061 1.02247 1.18955 0.91615 0.95943 0.95061 1.21669 0.92179 0.93647 1.50643 0.91473 1.26024 0.97945 1.01359 0.94745 1.70102 1.03889 1.31901 1.51570 0.85466 0.76865 0.79233 0.79258 1.19037 1.21204 1.19027 1.20542 0.90446 0.99733 1.07895 0.89919 0.89985 0.90650 0.83663 0.84068 0.85684 0.91965 0.91973 0.85209 0.85200 0.74366 0.93191 0.93201 0.91248 0.91241 0.98978 0.98983 0.92837 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.24 16 2 C -0.05 -0.80 5.88 -19.88 -0.12 -0.92 16 3 C -0.17 -2.43 9.70 22.28 0.22 -2.21 16 4 C -0.08 -1.43 10.04 22.25 0.22 -1.20 16 5 C -0.23 -4.82 9.04 22.36 0.20 -4.62 16 6 C 0.11 2.48 6.69 22.51 0.15 2.63 16 7 O -0.32 -6.97 10.14 -92.52 -0.94 -7.91 16 8 C 0.08 1.64 4.03 71.98 0.29 1.93 16 9 C -0.13 -2.18 6.07 29.85 0.18 -2.00 16 10 C 0.51 13.44 7.83 87.66 0.69 14.13 16 11 O -0.59 -21.07 15.98 -3.03 -0.05 -21.12 16 12 N -0.71 -17.96 5.56 -463.07 -2.57 -20.53 16 13 C 0.13 4.38 5.67 86.38 0.49 4.87 16 14 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 15 C 0.02 1.13 4.97 29.85 0.15 1.28 16 16 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 17 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 18 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 19 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 20 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.17 -3.06 9.64 22.37 0.22 -2.84 16 25 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 27 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 29 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.13 2.63 6.30 -2.91 -0.02 2.61 16 31 H 0.06 1.41 7.62 -2.39 -0.02 1.39 16 32 H 0.06 1.41 7.62 -2.38 -0.02 1.39 16 33 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 7.53 8.47 -92.71 -0.79 6.74 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.23 364.90 3.21 -69.01 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.20 Total: 14.08 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.26 Total: -22.45 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.29 Total: -77.16 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.99 Total: -29.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.23 3.21 -69.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.392 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds