Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00341 * 2 1 4 4 C 1.52999 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47129 * 64.99491 * 4 3 2 6 6 C 1.46497 * 120.00277 * 269.99908 * 5 4 3 7 7 C 1.50697 * 109.47478 * 270.00151 * 6 5 4 8 8 H 1.07999 * 119.99609 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00202 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46987 * 120.00464 * 11 9 7 14 14 H 1.48502 * 109.47104 * 240.00224 * 11 9 7 15 15 C 1.34771 * 119.99778 * 90.00471 * 5 4 3 16 16 O 1.21276 * 120.00222 * 179.97438 * 15 5 4 17 17 C 1.50709 * 120.00247 * 359.97438 * 15 5 4 18 18 C 1.50693 * 109.47444 * 180.02562 * 17 15 5 19 19 C 1.38233 * 120.00207 * 89.99457 * 18 17 15 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.50700 * 120.00260 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99693 * 0.02562 * 21 20 19 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 21 20 25 25 H 1.09001 * 109.46731 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.46736 * 59.99894 * 1 2 3 27 27 H 1.08996 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47333 * 59.99692 * 3 2 1 29 29 H 1.09003 * 109.46839 * 299.99718 * 3 2 1 30 30 H 1.08998 * 109.47252 * 304.99725 * 4 3 2 31 31 H 1.08998 * 109.47281 * 185.00036 * 4 3 2 32 32 H 1.09004 * 109.46839 * 30.00473 * 6 5 4 33 33 H 1.08998 * 109.47010 * 150.00204 * 6 5 4 34 34 H 0.97005 * 120.00060 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.46880 * 60.00277 * 17 15 5 36 36 H 1.09001 * 109.46663 * 300.00161 * 17 15 5 37 37 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 39 39 H 1.09000 * 109.46827 * 89.99810 * 22 21 20 40 40 H 1.08999 * 109.47240 * 210.00239 * 22 21 20 41 41 H 1.08999 * 109.46861 * 329.99859 * 22 21 20 42 42 H 1.08001 * 119.99658 * 179.97438 * 23 21 20 43 43 H 1.07999 * 119.99990 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5637 -1.2508 6 6 4.1063 -0.8928 -1.3402 7 6 5.5017 -1.2985 -0.9411 8 1 6.2200 -0.5466 -0.6496 9 6 5.8610 -2.6296 -0.9470 10 7 4.9860 -3.5452 -1.3015 11 14 7.5904 -3.1324 -0.4516 12 1 8.3757 -1.9226 -0.0983 13 1 7.5250 -4.0398 0.7223 14 1 8.2453 -3.8349 -1.5843 15 6 4.2635 1.3325 -2.3199 16 8 4.6292 0.8187 -3.3558 17 6 4.1298 2.8308 -2.2282 18 6 4.5065 3.4506 -3.5492 19 6 3.5409 3.6553 -4.5170 20 6 3.8855 4.2291 -5.7265 21 6 5.1965 4.5932 -5.9704 22 6 5.5722 5.2182 -7.2892 23 6 6.1632 4.3830 -5.0048 24 6 5.8186 3.8095 -3.7951 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8462 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9786 2.1763 0.0902 32 1 3.3857 -1.3634 -0.6712 33 1 3.9139 -1.2126 -2.3643 34 1 5.2387 -4.4818 -1.3053 35 1 4.7911 3.2075 -1.4480 36 1 3.0988 3.0894 -1.9868 37 1 2.5165 3.3715 -4.3263 38 1 3.1303 4.3933 -6.4809 39 1 5.4761 6.3016 -7.2183 40 1 6.6027 4.9600 -7.5332 41 1 4.9096 4.8449 -8.0700 42 1 7.1876 4.6670 -5.1954 43 1 6.5737 3.6457 -3.0406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = -62.879729 kcal Electronic energy + Delta-G solvation = -23286.606423 eV Core-core repulsion = 19910.723792 eV Total energy + Delta-G solvation = -3375.882630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69349 -38.59827 -37.43079 -34.78836 -33.60301 -32.57840 -30.74343 -29.82264 -29.39547 -27.07805 -25.94164 -25.10924 -22.71841 -22.54745 -22.46908 -20.64272 -18.36422 -16.72969 -16.40010 -16.24700 -15.81915 -15.50716 -15.39264 -15.03334 -14.73936 -14.67358 -14.02214 -13.85866 -13.68474 -13.24987 -12.96632 -12.60698 -12.53179 -12.23133 -12.09081 -11.86067 -11.66515 -11.62212 -11.44897 -11.19868 -10.94064 -10.87673 -10.80480 -10.73131 -10.35722 -10.07299 -9.51131 -9.42730 -8.90832 -8.71410 -8.32913 -8.24933 -7.55905 -5.93568 -3.97486 1.50294 1.61458 3.35198 3.41876 3.44841 3.50037 3.79908 4.04547 4.16951 4.53325 4.86970 4.91568 5.05599 5.15016 5.17763 5.22085 5.30454 5.40033 5.44442 5.47991 5.52268 5.54348 5.59456 5.61860 5.67147 5.70777 5.72764 5.82105 5.86629 5.87538 6.22483 6.25095 6.27019 6.57702 6.73095 6.82146 7.18471 7.31388 7.41790 7.62459 7.68348 8.04522 8.36771 8.53959 9.01329 9.19501 9.66452 11.14492 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.004869 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.792535 B = 5748.935988 C = 7477.244364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.591 5.591 6 C 0.250 3.750 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.504 3.496 16 O -0.531 6.531 17 C -0.107 4.107 18 C -0.059 4.059 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.096 4.096 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.100 4.100 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 18.000 -1.478 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.323 5.323 6 C 0.131 3.869 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.290 3.710 16 O -0.408 6.408 17 C -0.147 4.147 18 C -0.059 4.059 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.096 4.096 22 C -0.168 4.168 23 C -0.138 4.138 24 C -0.118 4.118 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.646 17.324 -2.053 18.336 hybrid contribution 0.657 -0.227 0.423 0.814 sum -4.989 17.096 -1.630 17.884 Atomic orbital electron populations 1.22700 0.82070 1.02610 0.99080 1.88111 1.18695 1.26924 1.95120 1.23122 0.95428 0.85459 0.99448 1.21516 0.91126 0.98998 0.89746 1.48180 1.64454 1.09846 1.09775 1.19292 0.96652 0.72169 0.98790 1.21512 0.97540 0.92190 1.45030 0.92648 1.24913 0.97288 0.96452 0.95450 1.69959 1.34213 1.00873 1.48243 0.86497 0.84717 0.78443 0.78051 1.19901 1.21046 1.20993 1.20185 0.78700 0.87870 0.84242 1.90694 1.46001 1.74743 1.29337 1.20829 1.03257 0.94478 0.96144 1.19349 0.93760 0.97578 0.95217 1.20923 0.99117 0.98628 0.93411 1.20908 0.95694 1.00218 0.97114 1.19843 0.93708 0.99912 0.96147 1.20750 1.01900 1.00106 0.94005 1.20931 0.98809 1.00434 0.93631 1.20974 0.95499 0.97982 0.97375 0.94687 0.94621 0.89770 0.93085 0.93789 0.88986 0.90079 0.93693 0.94387 0.92949 0.88640 0.89030 0.86470 0.86444 0.91574 0.91737 0.91772 0.86379 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.37 9.53 -35.23 -0.34 -6.71 16 3 C 0.04 0.61 6.28 37.16 0.23 0.84 16 4 C 0.11 1.78 5.62 -4.04 -0.02 1.76 16 5 N -0.59 -12.68 2.42 -175.06 -0.42 -13.10 16 6 C 0.25 6.78 4.98 -5.20 -0.03 6.75 16 7 C -0.52 -15.27 9.39 -34.44 -0.32 -15.59 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 11 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.50 10.62 7.67 -10.98 -0.08 10.54 16 16 O -0.53 -13.85 15.61 5.56 0.09 -13.76 16 17 C -0.11 -1.60 4.38 -29.03 -0.13 -1.73 16 18 C -0.06 -0.91 4.37 -104.63 -0.46 -1.37 16 19 C -0.10 -1.50 9.70 -39.58 -0.38 -1.88 16 20 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 21 C -0.10 -1.24 5.88 -104.62 -0.62 -1.85 16 22 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 23 C -0.12 -1.63 9.70 -39.58 -0.38 -2.02 16 24 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 30 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 31 H 0.08 1.00 6.44 -51.93 -0.33 0.66 16 32 H 0.05 1.27 7.12 -51.93 -0.37 0.90 16 33 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.10 1.21 7.35 -51.93 -0.38 0.83 16 36 H 0.09 1.12 7.20 -51.93 -0.37 0.74 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -36.10 361.69 -7.92 -44.03 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.83 Total: -0.70 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.58 Total: -5.93 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.31 Total: -39.77 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.25 Total: -20.47 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.10 -7.92 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.852 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds