Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00341 * 2 1 4 4 C 1.52999 * 109.47274 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47129 * 64.99491 * 4 3 2 6 6 C 1.46497 * 120.00277 * 269.99908 * 5 4 3 7 7 C 1.50697 * 109.47478 * 270.00151 * 6 5 4 8 8 H 1.07999 * 119.99609 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00202 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46987 * 120.00464 * 11 9 7 14 14 H 1.48502 * 109.47104 * 240.00224 * 11 9 7 15 15 C 1.34771 * 119.99778 * 90.00471 * 5 4 3 16 16 O 1.21276 * 120.00222 * 179.97438 * 15 5 4 17 17 C 1.50709 * 120.00247 * 359.97438 * 15 5 4 18 18 C 1.50693 * 109.47444 * 180.02562 * 17 15 5 19 19 C 1.38233 * 120.00207 * 89.99457 * 18 17 15 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.50700 * 120.00260 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99693 * 0.02562 * 21 20 19 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 21 20 25 25 H 1.09001 * 109.46731 * 300.00469 * 1 2 3 26 26 H 1.08998 * 109.46736 * 59.99894 * 1 2 3 27 27 H 1.08996 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47333 * 59.99692 * 3 2 1 29 29 H 1.09003 * 109.46839 * 299.99718 * 3 2 1 30 30 H 1.08998 * 109.47252 * 304.99725 * 4 3 2 31 31 H 1.08998 * 109.47281 * 185.00036 * 4 3 2 32 32 H 1.09004 * 109.46839 * 30.00473 * 6 5 4 33 33 H 1.08998 * 109.47010 * 150.00204 * 6 5 4 34 34 H 0.97005 * 120.00060 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.46880 * 60.00277 * 17 15 5 36 36 H 1.09001 * 109.46663 * 300.00161 * 17 15 5 37 37 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 39 39 H 1.09000 * 109.46827 * 89.99810 * 22 21 20 40 40 H 1.08999 * 109.47240 * 210.00239 * 22 21 20 41 41 H 1.08999 * 109.46861 * 329.99859 * 22 21 20 42 42 H 1.08001 * 119.99658 * 179.97438 * 23 21 20 43 43 H 1.07999 * 119.99990 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5637 -1.2508 6 6 4.1063 -0.8928 -1.3402 7 6 5.5017 -1.2985 -0.9411 8 1 6.2200 -0.5466 -0.6496 9 6 5.8610 -2.6296 -0.9470 10 7 4.9860 -3.5452 -1.3015 11 14 7.5904 -3.1324 -0.4516 12 1 8.3757 -1.9226 -0.0983 13 1 7.5250 -4.0398 0.7223 14 1 8.2453 -3.8349 -1.5843 15 6 4.2635 1.3325 -2.3199 16 8 4.6292 0.8187 -3.3558 17 6 4.1298 2.8308 -2.2282 18 6 4.5065 3.4506 -3.5492 19 6 3.5409 3.6553 -4.5170 20 6 3.8855 4.2291 -5.7265 21 6 5.1965 4.5932 -5.9704 22 6 5.5722 5.2182 -7.2892 23 6 6.1632 4.3830 -5.0048 24 6 5.8186 3.8095 -3.7951 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8462 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9786 2.1763 0.0902 32 1 3.3857 -1.3634 -0.6712 33 1 3.9139 -1.2126 -2.3643 34 1 5.2387 -4.4818 -1.3053 35 1 4.7911 3.2075 -1.4480 36 1 3.0988 3.0894 -1.9868 37 1 2.5165 3.3715 -4.3263 38 1 3.1303 4.3933 -6.4809 39 1 5.4761 6.3016 -7.2183 40 1 6.6027 4.9600 -7.5332 41 1 4.9096 4.8449 -8.0700 42 1 7.1876 4.6670 -5.1954 43 1 6.5737 3.6457 -3.0406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -85.914385 kcal Electronic energy + Delta-G solvation = -23287.605280 eV Core-core repulsion = 19910.723792 eV Total energy + Delta-G solvation = -3376.881488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06074 -39.85937 -38.68854 -36.48857 -34.93910 -34.49264 -31.77563 -31.30645 -30.58718 -28.81563 -27.07530 -26.40660 -24.52589 -23.84432 -23.58620 -21.76083 -19.92424 -18.62576 -18.08733 -17.58235 -17.01762 -16.79740 -16.70536 -16.40880 -16.05354 -15.92579 -15.65980 -15.25363 -14.62842 -14.37481 -14.30359 -14.23692 -13.72318 -13.59375 -13.34963 -13.15053 -13.02839 -12.86357 -12.78056 -12.62432 -12.61106 -12.54050 -12.17680 -11.96614 -11.88582 -11.77204 -11.63616 -10.64066 -10.61112 -10.49522 -9.76828 -9.37637 -9.33126 -8.18401 -6.33300 0.43833 0.55861 1.35499 1.38205 1.49978 1.89025 2.32484 2.46952 2.91796 3.01345 3.11078 3.74117 3.91701 3.93011 4.12020 4.16372 4.18440 4.29834 4.33027 4.46171 4.53389 4.55373 4.58417 4.62802 4.65896 4.68096 4.86558 4.87261 4.88506 4.97034 5.02301 5.21789 5.23365 5.30712 5.33647 5.53725 5.61166 5.73092 5.73455 5.91119 6.12176 6.18263 6.37606 6.76087 6.88150 7.32110 7.55390 8.88897 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.004869 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.792535 B = 5748.935988 C = 7477.244364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.044 3.956 4 C 0.103 3.897 5 N -0.596 5.596 6 C 0.272 3.728 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.283 1.283 15 C 0.496 3.504 16 O -0.594 6.594 17 C -0.089 4.089 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.132 4.132 24 C -0.120 4.120 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.026 0.974 33 H -0.016 1.016 34 H 0.265 0.735 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 20.491 -0.782 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.151 3.849 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.189 1.189 13 H -0.194 1.194 14 H -0.209 1.209 15 C 0.285 3.715 16 O -0.475 6.475 17 C -0.129 4.129 18 C -0.084 4.084 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.101 4.101 22 C -0.166 4.166 23 C -0.150 4.150 24 C -0.138 4.138 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.145 0.855 32 H 0.044 0.956 33 H 0.002 0.998 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.155 0.845 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.337 19.863 -1.312 20.609 hybrid contribution 0.497 -0.983 0.158 1.112 sum -4.841 18.880 -1.154 19.525 Atomic orbital electron populations 1.22843 0.80107 1.02965 1.00842 1.88050 1.21104 1.29185 1.95529 1.23215 0.93456 0.84747 1.01927 1.21917 0.93271 1.00365 0.86410 1.48152 1.64578 1.07744 1.12223 1.18595 0.95418 0.76132 0.94763 1.21804 0.98342 0.92611 1.45181 0.92815 1.25886 1.01875 0.96437 0.95191 1.70093 1.36544 1.01355 1.49028 0.85369 0.79044 0.78392 0.77985 1.18892 1.19426 1.20880 1.21285 0.76911 0.90414 0.82874 1.90653 1.48718 1.76449 1.31662 1.20781 1.06007 0.88920 0.97152 1.19516 0.94316 0.98681 0.95895 1.21191 0.99589 0.98880 0.93914 1.21262 0.96641 0.99770 0.97233 1.20287 0.93452 0.99038 0.97275 1.20808 1.02427 1.01020 0.92310 1.21251 1.00088 1.00253 0.93394 1.21204 0.95615 0.98658 0.98302 0.91859 0.93745 0.90332 0.88867 0.92683 0.90675 0.85483 0.95574 0.99786 0.92602 0.85784 0.85705 0.85596 0.84242 0.89717 0.91105 0.90937 0.84515 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.36 9.53 -148.98 -1.42 -15.78 16 3 C 0.04 1.12 6.28 71.98 0.45 1.58 16 4 C 0.10 3.16 5.62 86.38 0.49 3.64 16 5 N -0.60 -26.04 2.42 -826.17 -2.00 -28.04 16 6 C 0.27 15.59 4.98 85.63 0.43 16.01 16 7 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -58.96 13.29 21.44 0.28 -58.68 16 11 Si 0.97 46.57 29.54 68.60 2.03 48.60 16 12 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 15 C 0.50 21.14 7.67 87.66 0.67 21.82 16 16 O -0.59 -32.36 15.61 -3.02 -0.05 -32.41 16 17 C -0.09 -2.51 4.38 29.10 0.13 -2.38 16 18 C -0.08 -2.53 4.37 -19.87 -0.09 -2.61 16 19 C -0.12 -3.32 9.70 22.27 0.22 -3.11 16 20 C -0.13 -3.30 9.70 22.27 0.22 -3.09 16 21 C -0.10 -2.43 5.88 -19.86 -0.12 -2.55 16 22 C -0.11 -1.83 10.01 71.24 0.71 -1.11 16 23 C -0.13 -3.44 9.70 22.27 0.22 -3.22 16 24 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.29 7.30 -2.39 -0.02 1.27 16 30 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.13 2.67 6.44 -2.39 -0.02 2.66 16 32 H 0.03 1.57 7.12 -2.38 -0.02 1.56 16 33 H -0.02 -1.07 7.42 -2.39 -0.02 -1.09 16 34 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 35 H 0.12 2.75 7.35 -2.39 -0.02 2.73 16 36 H 0.12 2.64 7.20 -2.39 -0.02 2.62 16 37 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 41 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 42 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -84.07 361.69 5.31 -78.76 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.98 Total: 15.51 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.49 Total: -7.97 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.71 Total: -86.72 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -1.47 Total: -48.18 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -84.07 5.31 -78.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.156 kcal (2) G-P(sol) polarization free energy of solvation -84.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds