Wall clock time and date at job start Tue Mar 31 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99732 * 2 1 4 4 C 1.53006 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46607 * 65.00353 * 4 3 2 6 6 C 1.46501 * 119.99872 * 90.00127 * 5 4 3 7 7 C 1.50702 * 109.47221 * 85.92513 * 6 5 4 8 8 H 1.08003 * 119.99729 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00047 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99833 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99962 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47153 * 90.00064 * 11 9 7 13 13 H 1.48500 * 109.47063 * 209.99660 * 11 9 7 14 14 H 1.48497 * 109.47414 * 329.99901 * 11 9 7 15 15 C 1.34776 * 120.00102 * 269.99680 * 5 4 3 16 16 O 1.21551 * 120.00171 * 4.55086 * 15 5 4 17 17 C 1.47845 * 119.99977 * 184.55399 * 15 5 4 18 18 C 1.39600 * 120.14498 * 300.79446 * 17 15 5 19 19 C 1.37937 * 119.85620 * 179.97438 * 18 17 15 20 20 C 1.50693 * 119.92946 * 180.02562 * 19 18 17 21 21 C 1.38383 * 120.14191 * 0.02562 * 19 18 17 22 22 C 1.38337 * 120.29491 * 359.95937 * 21 19 18 23 23 C 1.37984 * 120.14234 * 359.78597 * 22 21 19 24 24 C 1.50703 * 120.07077 * 180.23469 * 23 22 21 25 25 H 1.09003 * 109.47310 * 59.99319 * 1 2 3 26 26 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47308 * 299.99694 * 1 2 3 28 28 H 1.09009 * 109.47014 * 60.00657 * 3 2 1 29 29 H 1.08997 * 109.47486 * 299.99977 * 3 2 1 30 30 H 1.09002 * 109.47103 * 185.00273 * 4 3 2 31 31 H 1.08992 * 109.47153 * 305.00518 * 4 3 2 32 32 H 1.08999 * 109.47299 * 205.92292 * 6 5 4 33 33 H 1.09002 * 109.47499 * 325.92737 * 6 5 4 34 34 H 0.96996 * 119.99697 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.07292 * 359.95977 * 18 17 15 36 36 H 1.09003 * 109.47551 * 89.99385 * 20 19 18 37 37 H 1.08999 * 109.47353 * 209.99664 * 20 19 18 38 38 H 1.09007 * 109.47085 * 330.00067 * 20 19 18 39 39 H 1.07999 * 119.85324 * 179.97438 * 21 19 18 40 40 H 1.07995 * 119.92881 * 180.02562 * 22 21 19 41 41 H 1.09003 * 109.46639 * 265.05143 * 24 23 22 42 42 H 1.08997 * 109.47632 * 25.05299 * 24 23 22 43 43 H 1.09006 * 109.47031 * 145.05978 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2882 1.4000 -2.4130 7 6 5.7199 1.8628 -2.3295 8 1 6.3363 1.5638 -1.4945 9 6 6.2433 2.6671 -3.3196 10 7 7.4927 3.0714 -3.2464 11 14 5.1775 3.1837 -4.7640 12 1 4.4869 4.4575 -4.4390 13 1 6.0301 3.3753 -5.9647 14 1 4.1683 2.1290 -5.0367 15 6 4.0958 -0.7758 -1.3333 16 8 3.7590 -1.4747 -0.3975 17 6 4.6365 -1.3958 -2.5618 18 6 4.0016 -1.1911 -3.7881 19 6 4.5115 -1.7719 -4.9307 20 6 3.8278 -1.5516 -6.2554 21 6 5.6494 -2.5565 -4.8630 22 6 6.2835 -2.7630 -3.6510 23 6 5.7868 -2.1835 -2.5015 24 6 6.4820 -2.4053 -1.1829 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.9785 2.1766 0.0903 31 1 3.8508 0.5685 0.8426 32 1 4.1461 0.8211 -3.3256 33 1 3.6265 2.2662 -2.4255 34 1 7.8608 3.6375 -3.9427 35 1 3.1131 -0.5796 -3.8422 36 1 4.2454 -0.6675 -6.7373 37 1 3.9838 -2.4212 -6.8938 38 1 2.7597 -1.4066 -6.0934 39 1 6.0443 -3.0093 -5.7604 40 1 7.1714 -3.3760 -3.6051 41 1 6.0091 -3.2355 -0.6581 42 1 7.5319 -2.6383 -1.3602 43 1 6.4075 -1.5026 -0.5765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:01 Heat of formation + Delta-G solvation = -56.253343 kcal Electronic energy + Delta-G solvation = -24476.466525 eV Core-core repulsion = 21100.871237 eV Total energy + Delta-G solvation = -3375.595289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88531 -38.20308 -37.20076 -35.04874 -33.36811 -32.52861 -31.23044 -29.52258 -28.85188 -27.56789 -26.08523 -24.64601 -23.55834 -22.73605 -21.85130 -20.59595 -18.26209 -17.01104 -16.59414 -16.19510 -15.72815 -15.51564 -15.29716 -14.93381 -14.73605 -14.23100 -13.78164 -13.58067 -13.29799 -12.96494 -12.83888 -12.60973 -12.40908 -12.28465 -12.22174 -11.90878 -11.66030 -11.57517 -11.48637 -11.14941 -11.10235 -10.91542 -10.76717 -10.62765 -10.57738 -10.17782 -9.60390 -9.39133 -9.03814 -8.69777 -8.32437 -7.99512 -7.67088 -6.17259 -4.16642 1.61479 1.80639 3.18047 3.26398 3.27075 3.43638 3.80149 4.12920 4.25945 4.30206 5.10278 5.14592 5.16573 5.27963 5.32992 5.36524 5.40884 5.50644 5.56194 5.59680 5.66583 5.74036 5.78524 5.83150 5.89085 5.99682 6.03981 6.08187 6.14193 6.31559 6.32913 6.41394 6.50676 6.63700 6.70037 6.77680 6.91959 7.01357 7.32840 7.39877 7.49713 7.51873 8.17057 8.46530 8.87254 9.00976 9.43068 10.95761 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.008173 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.830056 B = 3425.235520 C = 4544.642883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.198 3.802 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.866 3.134 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.567 3.433 16 O -0.541 6.541 17 C -0.092 4.092 18 C -0.080 4.080 19 C -0.102 4.102 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.042 4.042 24 C -0.110 4.110 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 -6.831 -1.027 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.034 4.034 4 C -0.001 4.001 5 N -0.314 5.314 6 C 0.077 3.923 7 C -0.570 4.570 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.693 3.307 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.354 3.646 16 O -0.419 6.419 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.103 4.103 20 C -0.166 4.166 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.043 4.043 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.724 -7.222 -0.625 11.343 hybrid contribution -0.564 0.986 -0.988 1.505 sum -9.288 -6.236 -1.613 11.303 Atomic orbital electron populations 1.22676 0.82587 1.02153 0.99143 1.88158 1.18141 1.27081 1.95144 1.23072 0.95440 0.85163 0.99738 1.21361 0.90952 0.99734 0.88029 1.47736 1.64650 1.05586 1.13452 1.20063 0.97159 0.90439 0.84679 1.21334 0.94971 1.30949 1.09744 0.90464 1.24830 0.94787 0.95405 0.97547 1.69890 1.13535 1.35221 1.34351 0.86986 0.81073 0.79603 0.83042 1.20073 1.20883 1.18698 1.18131 0.77474 0.82184 0.86793 1.90715 1.50043 1.61992 1.39165 1.19691 0.96778 0.99296 0.93724 1.20947 0.99881 0.97898 0.91108 1.19685 0.96706 0.98736 0.95124 1.20740 0.99972 1.01969 0.93967 1.20972 0.95304 0.98799 0.97453 1.20837 1.00212 1.00970 0.92035 1.19745 0.93624 0.95012 0.95898 1.20751 0.99104 1.02772 0.94004 0.94762 0.90156 0.94714 0.93073 0.93423 0.88469 0.89946 0.93533 0.95810 0.92512 0.86092 0.91321 0.91815 0.91883 0.86359 0.86020 0.91000 0.91856 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.47 9.30 -47.82 -0.44 -6.92 16 3 C 0.04 0.70 6.28 37.16 0.23 0.93 16 4 C 0.12 2.25 5.87 -4.04 -0.02 2.23 16 5 N -0.58 -12.44 2.44 -176.17 -0.43 -12.87 16 6 C 0.20 4.50 4.05 -5.19 -0.02 4.48 16 7 C -0.53 -14.25 9.94 -34.44 -0.34 -14.59 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 11 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 15 C 0.57 12.42 5.64 -12.33 -0.07 12.35 16 16 O -0.54 -12.62 15.13 -7.26 -0.11 -12.73 16 17 C -0.09 -1.91 4.98 -104.97 -0.52 -2.43 16 18 C -0.08 -1.52 7.24 -39.18 -0.28 -1.80 16 19 C -0.10 -1.72 5.87 -104.68 -0.61 -2.33 16 20 C -0.11 -1.46 10.01 36.00 0.36 -1.10 16 21 C -0.11 -1.69 9.69 -39.49 -0.38 -2.08 16 22 C -0.12 -2.04 9.67 -39.64 -0.38 -2.42 16 23 C -0.04 -0.81 5.91 -104.22 -0.62 -1.42 16 24 C -0.11 -1.94 9.15 36.01 0.33 -1.61 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 31 H 0.08 1.55 7.49 -51.93 -0.39 1.16 16 32 H 0.05 1.07 3.26 -51.93 -0.17 0.90 16 33 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 2.22 7.26 -52.49 -0.38 1.84 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.07 1.36 7.26 -51.93 -0.38 0.99 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -32.23 354.39 -7.64 -39.87 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.78 Total: 3.50 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.32 Total: -6.24 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.34 Total: -38.33 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.55 Total: -19.65 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.23 -7.64 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.382 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds