Wall clock time and date at job start Tue Mar 31 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99732 * 2 1 4 4 C 1.53006 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46607 * 65.00353 * 4 3 2 6 6 C 1.46501 * 119.99872 * 90.00127 * 5 4 3 7 7 C 1.50702 * 109.47221 * 85.92513 * 6 5 4 8 8 H 1.08003 * 119.99729 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00047 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99833 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99962 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47153 * 90.00064 * 11 9 7 13 13 H 1.48500 * 109.47063 * 209.99660 * 11 9 7 14 14 H 1.48497 * 109.47414 * 329.99901 * 11 9 7 15 15 C 1.34776 * 120.00102 * 269.99680 * 5 4 3 16 16 O 1.21551 * 120.00171 * 4.55086 * 15 5 4 17 17 C 1.47845 * 119.99977 * 184.55399 * 15 5 4 18 18 C 1.39600 * 120.14498 * 300.79446 * 17 15 5 19 19 C 1.37937 * 119.85620 * 179.97438 * 18 17 15 20 20 C 1.50693 * 119.92946 * 180.02562 * 19 18 17 21 21 C 1.38383 * 120.14191 * 0.02562 * 19 18 17 22 22 C 1.38337 * 120.29491 * 359.95937 * 21 19 18 23 23 C 1.37984 * 120.14234 * 359.78597 * 22 21 19 24 24 C 1.50703 * 120.07077 * 180.23469 * 23 22 21 25 25 H 1.09003 * 109.47310 * 59.99319 * 1 2 3 26 26 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47308 * 299.99694 * 1 2 3 28 28 H 1.09009 * 109.47014 * 60.00657 * 3 2 1 29 29 H 1.08997 * 109.47486 * 299.99977 * 3 2 1 30 30 H 1.09002 * 109.47103 * 185.00273 * 4 3 2 31 31 H 1.08992 * 109.47153 * 305.00518 * 4 3 2 32 32 H 1.08999 * 109.47299 * 205.92292 * 6 5 4 33 33 H 1.09002 * 109.47499 * 325.92737 * 6 5 4 34 34 H 0.96996 * 119.99697 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.07292 * 359.95977 * 18 17 15 36 36 H 1.09003 * 109.47551 * 89.99385 * 20 19 18 37 37 H 1.08999 * 109.47353 * 209.99664 * 20 19 18 38 38 H 1.09007 * 109.47085 * 330.00067 * 20 19 18 39 39 H 1.07999 * 119.85324 * 179.97438 * 21 19 18 40 40 H 1.07995 * 119.92881 * 180.02562 * 22 21 19 41 41 H 1.09003 * 109.46639 * 265.05143 * 24 23 22 42 42 H 1.08997 * 109.47632 * 25.05299 * 24 23 22 43 43 H 1.09006 * 109.47031 * 145.05978 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2882 1.4000 -2.4130 7 6 5.7199 1.8628 -2.3295 8 1 6.3363 1.5638 -1.4945 9 6 6.2433 2.6671 -3.3196 10 7 7.4927 3.0714 -3.2464 11 14 5.1775 3.1837 -4.7640 12 1 4.4869 4.4575 -4.4390 13 1 6.0301 3.3753 -5.9647 14 1 4.1683 2.1290 -5.0367 15 6 4.0958 -0.7758 -1.3333 16 8 3.7590 -1.4747 -0.3975 17 6 4.6365 -1.3958 -2.5618 18 6 4.0016 -1.1911 -3.7881 19 6 4.5115 -1.7719 -4.9307 20 6 3.8278 -1.5516 -6.2554 21 6 5.6494 -2.5565 -4.8630 22 6 6.2835 -2.7630 -3.6510 23 6 5.7868 -2.1835 -2.5015 24 6 6.4820 -2.4053 -1.1829 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.9785 2.1766 0.0903 31 1 3.8508 0.5685 0.8426 32 1 4.1461 0.8211 -3.3256 33 1 3.6265 2.2662 -2.4255 34 1 7.8608 3.6375 -3.9427 35 1 3.1131 -0.5796 -3.8422 36 1 4.2454 -0.6675 -6.7373 37 1 3.9838 -2.4212 -6.8938 38 1 2.7597 -1.4066 -6.0934 39 1 6.0443 -3.0093 -5.7604 40 1 7.1714 -3.3760 -3.6051 41 1 6.0091 -3.2355 -0.6581 42 1 7.5319 -2.6383 -1.3602 43 1 6.4075 -1.5026 -0.5765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071141002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:00 Heat of formation + Delta-G solvation = -75.164222 kcal Electronic energy + Delta-G solvation = -24477.286562 eV Core-core repulsion = 21100.871237 eV Total energy + Delta-G solvation = -3376.415326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40468 -39.59399 -38.53229 -36.76443 -34.70545 -34.52622 -32.65433 -31.00866 -30.12391 -29.35490 -27.21447 -25.94425 -24.99270 -24.49338 -23.34509 -21.97233 -19.83214 -19.05097 -18.12217 -17.63270 -17.11345 -16.94706 -16.63098 -16.27624 -16.24692 -15.83967 -15.24859 -14.92877 -14.72692 -14.57820 -14.28048 -14.11995 -13.82375 -13.62015 -13.51333 -13.44285 -13.15668 -13.02517 -12.76259 -12.62351 -12.53087 -12.37111 -12.34292 -11.99136 -11.98548 -11.86795 -11.66914 -10.83105 -10.69241 -10.52239 -9.76173 -9.39099 -9.31666 -8.28510 -6.33768 0.22341 0.45704 1.36340 1.38238 1.48149 1.81267 2.26631 2.34346 2.85230 2.95047 3.06164 3.65501 3.90637 3.94175 4.09245 4.12905 4.19610 4.30336 4.38089 4.46802 4.51642 4.53855 4.60254 4.67222 4.69946 4.73374 4.75150 4.80758 4.82252 4.83937 4.87623 4.94471 5.08238 5.10529 5.34134 5.42081 5.46385 5.60266 5.64605 5.72457 6.09499 6.18957 6.33551 6.61833 6.70066 7.25746 7.37418 8.88101 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.008173 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.830056 B = 3425.235520 C = 4544.642883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.051 3.949 4 C 0.115 3.885 5 N -0.589 5.589 6 C 0.209 3.791 7 C -0.531 4.531 8 H 0.027 0.973 9 C 0.021 3.979 10 N -0.942 5.942 11 Si 0.932 3.068 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.237 1.237 15 C 0.563 3.437 16 O -0.566 6.566 17 C -0.127 4.127 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.103 4.103 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 -7.221 -3.545 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.026 4.026 4 C -0.008 4.008 5 N -0.318 5.318 6 C 0.087 3.913 7 C -0.570 4.570 8 H 0.045 0.955 9 C -0.177 4.177 10 N -0.582 5.582 11 Si 0.755 3.245 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.161 1.161 15 C 0.352 3.648 16 O -0.446 6.446 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.165 4.165 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.073 4.073 24 C -0.159 4.159 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.425 -7.613 -3.122 13.281 hybrid contribution 0.022 1.039 -0.127 1.047 sum -10.403 -6.574 -3.249 12.728 Atomic orbital electron populations 1.22861 0.80305 1.03072 1.00688 1.88107 1.20752 1.28016 1.95469 1.22988 0.93061 0.85074 1.01493 1.21540 0.93446 0.99292 0.86533 1.47803 1.64582 1.05540 1.13922 1.19871 0.94709 0.91069 0.85657 1.21434 0.96552 1.30759 1.08206 0.95457 1.25716 0.96043 0.95279 1.00695 1.70054 1.15851 1.36532 1.35766 0.85927 0.79629 0.80254 0.78708 1.18675 1.20871 1.16054 1.18468 0.76911 0.82238 0.87182 1.90670 1.51222 1.62417 1.40288 1.19847 0.98245 1.00947 0.93906 1.21097 1.00241 0.98977 0.91404 1.20172 0.96856 0.97664 0.95855 1.20823 1.00148 1.03298 0.92263 1.21479 0.94523 0.97772 0.98450 1.21237 1.00939 1.00443 0.91478 1.20061 0.93942 0.96001 0.97254 1.20687 1.00594 1.01215 0.93453 0.93649 0.89680 0.92608 0.89972 0.92755 0.88111 0.91354 0.92803 0.94097 0.92405 0.86038 0.91169 0.88983 0.90995 0.82469 0.83067 0.90494 0.89569 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.40 -14.05 9.30 -136.95 -1.27 -15.33 16 3 C 0.05 1.58 6.28 71.98 0.45 2.03 16 4 C 0.11 4.32 5.87 86.38 0.51 4.83 16 5 N -0.59 -25.71 2.44 -829.57 -2.02 -27.74 16 6 C 0.21 9.48 4.05 85.63 0.35 9.83 16 7 C -0.53 -29.26 9.94 25.60 0.25 -29.01 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C 0.02 1.18 5.47 84.65 0.46 1.64 16 10 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 11 Si 0.93 40.60 27.47 68.60 1.88 42.48 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.24 -9.31 6.54 99.48 0.65 -8.65 16 15 C 0.56 25.59 5.64 86.79 0.49 26.08 16 16 O -0.57 -27.59 15.13 8.16 0.12 -27.47 16 17 C -0.13 -5.33 4.98 -20.09 -0.10 -5.43 16 18 C -0.10 -3.67 7.24 22.53 0.16 -3.51 16 19 C -0.11 -3.25 5.87 -19.90 -0.12 -3.37 16 20 C -0.11 -2.47 10.01 71.23 0.71 -1.75 16 21 C -0.10 -2.97 9.69 22.33 0.22 -2.75 16 22 C -0.12 -3.87 9.67 22.23 0.21 -3.66 16 23 C -0.07 -2.78 5.91 -19.61 -0.12 -2.89 16 24 C -0.10 -3.77 9.15 71.24 0.65 -3.12 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 3.61 8.07 -2.39 -0.02 3.59 16 31 H 0.07 2.72 7.49 -2.39 -0.02 2.71 16 32 H 0.05 2.41 3.26 -2.39 -0.01 2.40 16 33 H 0.04 1.73 7.53 -2.39 -0.02 1.71 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.12 4.34 7.26 -2.91 -0.02 4.32 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.07 1.50 8.08 -2.38 -0.02 1.48 16 39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.09 2.64 8.05 -2.39 -0.02 2.62 16 43 H 0.03 1.43 7.26 -2.38 -0.02 1.41 16 Total: -1.00 -73.03 354.39 5.32 -67.70 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.93 Total: 26.02 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.39 Total: -9.18 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.72 Total: -84.22 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.15 Total: -42.80 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.48 kcal Total: -73.03 5.32 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.461 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds