Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99793 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47208 * 65.00127 * 4 3 2 6 6 C 1.46505 * 120.00191 * 270.00611 * 5 4 3 7 7 C 1.50705 * 109.46916 * 275.75429 * 6 5 4 8 8 H 1.07997 * 119.99585 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00120 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99694 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00314 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47157 * 59.99631 * 11 9 7 13 13 H 1.48495 * 109.47528 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46718 * 300.00094 * 11 9 7 15 15 C 1.34778 * 120.00002 * 89.99800 * 5 4 3 16 16 O 1.21546 * 119.99815 * 4.95575 * 15 5 4 17 17 C 1.47845 * 119.99737 * 184.94737 * 15 5 4 18 18 C 1.39589 * 120.15121 * 306.90092 * 17 15 5 19 19 C 1.37934 * 119.85673 * 179.97438 * 18 17 15 20 20 C 1.38379 * 120.14709 * 0.27928 * 19 18 17 21 21 C 1.38344 * 120.28690 * 359.44473 * 20 19 18 22 22 C 1.50700 * 119.92808 * 180.30416 * 21 20 19 23 23 C 1.37981 * 120.14804 * 0.55165 * 21 20 19 24 24 C 1.50700 * 120.07421 * 179.74834 * 23 21 20 25 25 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47307 * 299.99693 * 1 2 3 27 27 H 1.08999 * 109.47195 * 59.99932 * 1 2 3 28 28 H 1.09005 * 109.47115 * 60.00428 * 3 2 1 29 29 H 1.08993 * 109.47736 * 300.00181 * 3 2 1 30 30 H 1.09009 * 109.47046 * 305.00380 * 4 3 2 31 31 H 1.09002 * 109.47321 * 185.00696 * 4 3 2 32 32 H 1.08998 * 109.47265 * 35.75293 * 6 5 4 33 33 H 1.08997 * 109.47298 * 155.75780 * 6 5 4 34 34 H 0.97001 * 119.99650 * 179.97438 * 10 9 7 35 35 H 1.08006 * 120.07015 * 359.95759 * 18 17 15 36 36 H 1.08001 * 119.92822 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.86084 * 179.69798 * 20 19 18 38 38 H 1.08999 * 109.47091 * 270.25255 * 22 21 20 39 39 H 1.09011 * 109.46987 * 30.25007 * 22 21 20 40 40 H 1.08993 * 109.47549 * 150.24932 * 22 21 20 41 41 H 1.08997 * 109.47075 * 276.52281 * 24 23 21 42 42 H 1.08996 * 109.47058 * 36.52489 * 24 23 21 43 43 H 1.08999 * 109.46731 * 156.52192 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.1062 -0.8925 -1.3403 7 6 5.4526 -1.3107 -0.8078 8 1 6.1425 -0.5660 -0.4392 9 6 5.8032 -2.6439 -0.7903 10 7 4.9624 -3.5509 -1.2378 11 14 7.4717 -3.1624 -0.1296 12 1 7.5955 -2.7402 1.2888 13 1 7.6027 -4.6388 -0.2192 14 1 8.5433 -2.5202 -0.9324 15 6 4.2633 1.3331 -2.3200 16 8 4.2430 2.5443 -2.2203 17 6 4.6025 0.7033 -3.6138 18 6 5.6146 -0.2556 -3.6829 19 6 5.9257 -0.8397 -4.8931 20 6 5.2411 -0.4728 -6.0383 21 6 4.2331 0.4727 -5.9758 22 6 3.4881 0.8612 -7.2268 23 6 3.9119 1.0646 -4.7715 24 6 2.8175 2.0986 -4.7064 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1766 0.0903 32 1 3.3200 -1.3641 -0.7510 33 1 4.0152 -1.2021 -2.3815 34 1 5.2092 -4.4889 -1.2258 35 1 6.1530 -0.5394 -2.7906 36 1 6.7088 -1.5815 -4.9479 37 1 5.4918 -0.9296 -6.9842 38 1 3.9976 1.6956 -7.7088 39 1 3.4562 0.0118 -7.9093 40 1 2.4717 1.1571 -6.9673 41 1 3.2206 3.0723 -4.9846 42 1 2.0184 1.8257 -5.3956 43 1 2.4219 2.1455 -3.6918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071229839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -62.465976 kcal Electronic energy + Delta-G solvation = -24350.548209 eV Core-core repulsion = 20974.683520 eV Total energy + Delta-G solvation = -3375.864689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88665 -38.19081 -37.22554 -34.97078 -32.94273 -32.59792 -31.79105 -29.73069 -27.30848 -27.09160 -26.00499 -25.78001 -23.50092 -22.84455 -21.49939 -20.29164 -18.42944 -16.62409 -16.50734 -16.08318 -15.76159 -15.36124 -15.28408 -14.96925 -14.47233 -14.39050 -14.02095 -13.62221 -13.35294 -12.76791 -12.55564 -12.51405 -12.29439 -12.22308 -11.96596 -11.78705 -11.55642 -11.50862 -11.38915 -11.16101 -11.07050 -10.87752 -10.82266 -10.50072 -10.33024 -10.10187 -9.70830 -9.38050 -9.02784 -8.53298 -8.17017 -7.98273 -7.66268 -6.12859 -4.19858 1.63755 1.92840 3.25312 3.30932 3.32726 3.44547 3.90873 4.16789 4.30864 4.41598 5.15337 5.18964 5.19627 5.34352 5.39956 5.43311 5.50201 5.58821 5.65837 5.69114 5.71643 5.72542 5.73510 5.87299 5.95909 6.02350 6.09941 6.14569 6.18618 6.33315 6.40059 6.49350 6.67628 6.89273 6.97141 7.11245 7.13027 7.40956 7.50711 7.53396 7.63930 7.83250 8.13188 8.39887 8.82670 9.02287 9.45285 10.93097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.007934 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.781640 B = 3528.310161 C = 5370.743984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.049 3.951 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.234 3.766 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.891 3.109 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.559 3.441 16 O -0.572 6.572 17 C -0.116 4.116 18 C -0.063 4.063 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.048 4.048 24 C -0.110 4.110 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 6.363 -5.410 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.309 5.309 6 C 0.115 3.885 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.718 3.282 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.348 3.652 16 O -0.455 6.455 17 C -0.119 4.119 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.165 4.165 23 C -0.049 4.049 24 C -0.166 4.166 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.351 6.575 -5.352 10.025 hybrid contribution 0.721 -0.448 0.459 0.965 sum -4.630 6.127 -4.893 9.106 Atomic orbital electron populations 1.22679 0.82242 1.02394 0.99106 1.88077 1.18592 1.27351 1.95173 1.23023 0.95299 0.84966 0.99635 1.21346 0.90999 0.99708 0.88288 1.48124 1.62901 1.10154 1.09735 1.19623 0.97341 0.72542 0.99025 1.21437 1.01218 0.92410 1.42849 0.92211 1.24908 0.97175 0.96356 0.95019 1.69938 1.35331 1.01427 1.45253 0.86671 0.84217 0.77523 0.79771 1.20137 1.21145 1.20048 1.18343 0.76549 0.86151 0.84144 1.90657 1.55334 1.14123 1.85343 1.19735 0.99561 0.99558 0.93021 1.22074 0.95255 0.91302 0.99455 1.21051 1.00806 1.00553 0.92486 1.21048 0.95805 0.97258 0.98216 1.19490 0.98504 0.98787 0.94422 1.20750 0.99731 1.01267 0.94747 1.19607 0.96883 0.96823 0.91612 1.20788 0.96047 0.97180 1.02583 0.89877 0.94733 0.94702 0.93181 0.93590 0.89238 0.89353 0.93419 0.93893 0.92524 0.82390 0.86088 0.86622 0.91728 0.92019 0.91554 0.91093 0.91886 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.84 9.45 -35.23 -0.33 -7.17 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.28 5.87 -4.04 -0.02 2.26 16 5 N -0.58 -12.74 2.42 -176.17 -0.43 -13.16 16 6 C 0.23 5.76 4.53 -5.19 -0.02 5.74 16 7 C -0.54 -13.95 7.00 -34.44 -0.24 -14.19 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.88 -24.29 13.29 55.43 0.74 -23.56 16 11 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.56 12.36 6.13 -12.33 -0.08 12.29 16 16 O -0.57 -13.16 15.40 5.33 0.08 -13.08 16 17 C -0.12 -2.43 4.77 -104.97 -0.50 -2.93 16 18 C -0.06 -1.32 7.65 -39.19 -0.30 -1.62 16 19 C -0.13 -2.39 10.03 -39.64 -0.40 -2.79 16 20 C -0.11 -1.69 9.69 -39.49 -0.38 -2.08 16 21 C -0.11 -1.81 5.87 -104.68 -0.61 -2.42 16 22 C -0.11 -1.31 9.60 36.01 0.35 -0.97 16 23 C -0.05 -0.89 5.91 -104.22 -0.62 -1.51 16 24 C -0.11 -1.76 8.75 36.01 0.31 -1.44 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.71 8.07 -51.92 -0.42 1.30 16 31 H 0.09 1.60 7.36 -51.93 -0.38 1.21 16 32 H 0.05 1.28 7.03 -51.93 -0.37 0.91 16 33 H 0.04 1.13 5.61 -51.93 -0.29 0.83 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.16 3.65 5.30 -52.48 -0.28 3.37 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.66 8.09 -51.92 -0.42 0.24 16 40 H 0.07 0.75 6.05 -51.93 -0.31 0.44 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.84 6.23 -51.93 -0.32 0.52 16 43 H 0.06 1.15 6.45 -51.93 -0.33 0.82 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -29.79 349.38 -7.44 -37.23 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.48 Total: 4.47 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.27 Total: -5.34 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.31 Total: -36.72 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.25 Total: -20.25 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.79 -7.44 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.233 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds