Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99793 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47208 * 65.00127 * 4 3 2 6 6 C 1.46505 * 120.00191 * 270.00611 * 5 4 3 7 7 C 1.50705 * 109.46916 * 275.75429 * 6 5 4 8 8 H 1.07997 * 119.99585 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00120 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99694 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00314 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47157 * 59.99631 * 11 9 7 13 13 H 1.48495 * 109.47528 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46718 * 300.00094 * 11 9 7 15 15 C 1.34778 * 120.00002 * 89.99800 * 5 4 3 16 16 O 1.21546 * 119.99815 * 4.95575 * 15 5 4 17 17 C 1.47845 * 119.99737 * 184.94737 * 15 5 4 18 18 C 1.39589 * 120.15121 * 306.90092 * 17 15 5 19 19 C 1.37934 * 119.85673 * 179.97438 * 18 17 15 20 20 C 1.38379 * 120.14709 * 0.27928 * 19 18 17 21 21 C 1.38344 * 120.28690 * 359.44473 * 20 19 18 22 22 C 1.50700 * 119.92808 * 180.30416 * 21 20 19 23 23 C 1.37981 * 120.14804 * 0.55165 * 21 20 19 24 24 C 1.50700 * 120.07421 * 179.74834 * 23 21 20 25 25 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47307 * 299.99693 * 1 2 3 27 27 H 1.08999 * 109.47195 * 59.99932 * 1 2 3 28 28 H 1.09005 * 109.47115 * 60.00428 * 3 2 1 29 29 H 1.08993 * 109.47736 * 300.00181 * 3 2 1 30 30 H 1.09009 * 109.47046 * 305.00380 * 4 3 2 31 31 H 1.09002 * 109.47321 * 185.00696 * 4 3 2 32 32 H 1.08998 * 109.47265 * 35.75293 * 6 5 4 33 33 H 1.08997 * 109.47298 * 155.75780 * 6 5 4 34 34 H 0.97001 * 119.99650 * 179.97438 * 10 9 7 35 35 H 1.08006 * 120.07015 * 359.95759 * 18 17 15 36 36 H 1.08001 * 119.92822 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.86084 * 179.69798 * 20 19 18 38 38 H 1.08999 * 109.47091 * 270.25255 * 22 21 20 39 39 H 1.09011 * 109.46987 * 30.25007 * 22 21 20 40 40 H 1.08993 * 109.47549 * 150.24932 * 22 21 20 41 41 H 1.08997 * 109.47075 * 276.52281 * 24 23 21 42 42 H 1.08996 * 109.47058 * 36.52489 * 24 23 21 43 43 H 1.08999 * 109.46731 * 156.52192 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.1062 -0.8925 -1.3403 7 6 5.4526 -1.3107 -0.8078 8 1 6.1425 -0.5660 -0.4392 9 6 5.8032 -2.6439 -0.7903 10 7 4.9624 -3.5509 -1.2378 11 14 7.4717 -3.1624 -0.1296 12 1 7.5955 -2.7402 1.2888 13 1 7.6027 -4.6388 -0.2192 14 1 8.5433 -2.5202 -0.9324 15 6 4.2633 1.3331 -2.3200 16 8 4.2430 2.5443 -2.2203 17 6 4.6025 0.7033 -3.6138 18 6 5.6146 -0.2556 -3.6829 19 6 5.9257 -0.8397 -4.8931 20 6 5.2411 -0.4728 -6.0383 21 6 4.2331 0.4727 -5.9758 22 6 3.4881 0.8612 -7.2268 23 6 3.9119 1.0646 -4.7715 24 6 2.8175 2.0986 -4.7064 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1766 0.0903 32 1 3.3200 -1.3641 -0.7510 33 1 4.0152 -1.2021 -2.3815 34 1 5.2092 -4.4889 -1.2258 35 1 6.1530 -0.5394 -2.7906 36 1 6.7088 -1.5815 -4.9479 37 1 5.4918 -0.9296 -6.9842 38 1 3.9976 1.6956 -7.7088 39 1 3.4562 0.0118 -7.9093 40 1 2.4717 1.1571 -6.9673 41 1 3.2206 3.0723 -4.9846 42 1 2.0184 1.8257 -5.3956 43 1 2.4219 2.1455 -3.6918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071229839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -79.169177 kcal Electronic energy + Delta-G solvation = -24351.272514 eV Core-core repulsion = 20974.683520 eV Total energy + Delta-G solvation = -3376.588994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45871 -39.64074 -38.63069 -36.74375 -34.60450 -34.21979 -33.19459 -31.22221 -29.03843 -28.50695 -27.22766 -27.06989 -25.09784 -24.66232 -22.95784 -21.66866 -20.05847 -18.57412 -18.09605 -17.68406 -17.16035 -16.78767 -16.68441 -16.52910 -16.22694 -15.78431 -15.33202 -15.04247 -14.79348 -14.34326 -14.11325 -13.95567 -13.62854 -13.52487 -13.39449 -13.24239 -13.11958 -12.84817 -12.78835 -12.70958 -12.62630 -12.41082 -12.40289 -12.08272 -11.91612 -11.71962 -11.64774 -10.81587 -10.62425 -10.50225 -9.64115 -9.43622 -9.37033 -8.16297 -6.30058 0.18574 0.52704 1.42037 1.42612 1.50379 1.78138 2.26547 2.44333 2.87265 2.94278 3.12803 3.69922 3.94913 4.01178 4.11299 4.19891 4.22027 4.29708 4.36191 4.50271 4.53153 4.54005 4.58569 4.68328 4.78109 4.82395 4.83042 4.87842 4.94670 4.99449 5.02400 5.05030 5.17979 5.33994 5.41023 5.60032 5.66413 5.67209 5.71832 5.85583 6.09640 6.15014 6.27256 6.56654 6.82102 7.24983 7.40310 8.89233 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.007934 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.781640 B = 3528.310161 C = 5370.743984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.057 3.943 4 C 0.113 3.887 5 N -0.585 5.585 6 C 0.260 3.740 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.029 3.971 10 N -0.913 5.913 11 Si 0.951 3.049 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.270 1.270 15 C 0.557 3.443 16 O -0.588 6.588 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.141 4.141 20 C -0.097 4.097 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.062 4.062 24 C -0.104 4.104 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 6.728 -7.106 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.020 4.020 4 C -0.010 4.010 5 N -0.313 5.313 6 C 0.139 3.861 7 C -0.582 4.582 8 H 0.069 0.931 9 C -0.173 4.173 10 N -0.551 5.551 11 Si 0.776 3.224 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.195 1.195 15 C 0.347 3.653 16 O -0.471 6.471 17 C -0.149 4.149 18 C -0.108 4.108 19 C -0.159 4.159 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.163 4.163 23 C -0.063 4.063 24 C -0.160 4.160 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.770 6.958 -7.035 11.454 hybrid contribution 0.805 -0.534 0.934 1.344 sum -4.965 6.424 -6.101 10.156 Atomic orbital electron populations 1.22878 0.79946 1.03333 1.00695 1.88023 1.21241 1.28250 1.95476 1.22923 0.93338 0.84804 1.00947 1.21540 0.93136 0.99498 0.86820 1.48114 1.63143 1.09177 1.10915 1.19101 0.95891 0.73964 0.97100 1.21527 1.01512 0.92517 1.42618 0.93071 1.25577 1.00331 0.96240 0.95112 1.70040 1.37039 1.01689 1.46334 0.85726 0.80308 0.77261 0.79132 1.19844 1.20561 1.19458 1.18616 0.76026 0.86020 0.84655 1.90617 1.56244 1.14547 1.85717 1.19839 1.00887 1.00771 0.93443 1.21848 0.96296 0.92996 0.99662 1.21263 1.01549 1.00655 0.92401 1.21479 0.94697 0.96529 0.98820 1.20023 0.98042 0.97415 0.95200 1.20849 0.99709 1.02805 0.92895 1.19989 0.97204 0.97497 0.91638 1.20784 0.96202 0.97048 1.01959 0.89377 0.92216 0.93926 0.89689 0.94171 0.90017 0.88687 0.96048 0.95761 0.92401 0.85454 0.84971 0.82720 0.89878 0.89912 0.90601 0.90258 0.88822 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -15.20 9.45 -148.98 -1.41 -16.60 16 3 C 0.06 1.91 6.28 71.98 0.45 2.36 16 4 C 0.11 4.42 5.87 86.38 0.51 4.92 16 5 N -0.59 -26.85 2.42 -829.56 -2.01 -28.86 16 6 C 0.26 13.46 4.53 85.63 0.39 13.84 16 7 C -0.54 -29.19 7.00 25.60 0.18 -29.01 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.03 1.53 5.46 84.65 0.46 1.99 16 10 N -0.91 -51.47 13.29 21.45 0.28 -51.18 16 11 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 C 0.56 25.59 6.13 86.79 0.53 26.12 16 16 O -0.59 -27.77 15.40 -3.86 -0.06 -27.83 16 17 C -0.15 -6.34 4.77 -20.09 -0.10 -6.43 16 18 C -0.09 -3.91 7.65 22.52 0.17 -3.74 16 19 C -0.14 -5.11 10.03 22.23 0.22 -4.89 16 20 C -0.10 -2.90 9.69 22.33 0.22 -2.69 16 21 C -0.11 -3.18 5.87 -19.90 -0.12 -3.29 16 22 C -0.11 -2.11 9.60 71.24 0.68 -1.43 16 23 C -0.06 -2.25 5.91 -19.61 -0.12 -2.37 16 24 C -0.10 -3.20 8.75 71.24 0.62 -2.58 16 25 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 3.26 8.07 -2.38 -0.02 3.24 16 31 H 0.09 3.53 7.36 -2.39 -0.02 3.51 16 32 H 0.02 1.21 7.03 -2.39 -0.02 1.19 16 33 H 0.02 1.35 5.61 -2.39 -0.01 1.34 16 34 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.13 6.25 5.30 -2.91 -0.02 6.24 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 40 H 0.08 1.38 6.05 -2.39 -0.01 1.37 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.09 2.25 6.23 -2.39 -0.01 2.24 16 43 H 0.04 1.44 6.45 -2.39 -0.02 1.43 16 Total: -1.00 -66.75 349.38 5.19 -61.55 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 1.00 Total: 23.74 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.36 Total: -5.20 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.72 Total: -80.04 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.47 Total: -44.44 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -66.75 5.19 -61.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.614 kcal (2) G-P(sol) polarization free energy of solvation -66.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds