Wall clock time and date at job start Tue Mar 31 2020 07:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34223 * 125.42741 * 2 1 4 4 C 1.33667 * 110.90987 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.80756 * 180.02562 * 4 3 2 6 6 C 1.36496 * 108.38237 * 0.02562 * 4 3 2 7 7 C 1.47296 * 127.20110 * 179.97438 * 6 4 3 8 8 O 1.21635 * 120.00478 * 90.01743 * 7 6 4 9 9 N 1.34771 * 119.99478 * 270.29360 * 7 6 4 10 10 C 1.36968 * 120.00213 * 179.72215 * 9 7 6 11 11 H 1.07998 * 120.00117 * 222.37376 * 10 9 7 12 12 C 1.38982 * 119.99552 * 42.37299 * 10 9 7 13 13 N 1.31411 * 120.00044 * 19.63063 * 12 10 9 14 14 Si 1.86800 * 119.99799 * 199.63359 * 12 10 9 15 15 H 1.48508 * 109.47121 * 59.99989 * 14 12 10 16 16 H 1.48500 * 109.47042 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47117 * 300.00061 * 14 12 10 18 18 C 1.46503 * 120.00502 * 359.72781 * 9 7 6 19 19 C 1.54270 * 110.03145 * 240.13239 * 18 9 7 20 20 C 1.54970 * 104.15508 * 217.13342 * 19 18 9 21 21 C 1.54883 * 102.78166 * 37.88322 * 20 19 18 22 22 C 1.53870 * 110.03911 * 122.90577 * 18 9 7 23 23 C 1.34169 * 125.43017 * 180.33113 * 2 1 3 24 24 C 1.50704 * 127.01548 * 359.96522 * 23 2 1 25 25 H 1.09007 * 109.46803 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47157 * 119.97629 * 1 2 3 27 27 H 1.08997 * 109.47220 * 239.97990 * 1 2 3 28 28 H 1.09001 * 109.47510 * 269.97516 * 5 4 3 29 29 H 1.08999 * 109.47368 * 29.97526 * 5 4 3 30 30 H 1.09007 * 109.47076 * 149.97687 * 5 4 3 31 31 H 0.96999 * 119.99678 * 174.86427 * 13 12 10 32 32 H 1.09007 * 110.01189 * 1.51401 * 18 9 7 33 33 H 1.09002 * 110.48264 * 335.77584 * 19 18 9 34 34 H 1.08995 * 110.48994 * 98.42012 * 19 18 9 35 35 H 1.09003 * 110.71536 * 279.56797 * 20 19 18 36 36 H 1.09000 * 110.92155 * 156.29777 * 20 19 18 37 37 H 1.08994 * 110.48763 * 203.40731 * 21 20 19 38 38 H 1.08997 * 110.59937 * 80.81626 * 21 20 19 39 39 H 1.08996 * 110.03657 * 238.56909 * 22 18 9 40 40 H 1.09007 * 110.02880 * 0.02562 * 22 18 9 41 41 H 1.09007 * 109.46773 * 270.14632 * 24 23 2 42 42 H 1.08999 * 109.47292 * 30.14888 * 24 23 2 43 43 H 1.08997 * 109.46758 * 150.15528 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2850 1.0937 0.0000 4 6 3.5790 0.7586 -0.0006 5 6 4.7390 1.7208 -0.0002 6 6 3.6710 -0.6032 -0.0015 7 6 4.9016 -1.4127 -0.0029 8 8 5.4104 -1.7479 1.0498 9 7 5.4670 -1.7772 -1.1708 10 6 6.6145 -2.5251 -1.1722 11 1 7.4115 -2.2898 -1.8619 12 6 6.7530 -3.5867 -0.2860 13 7 5.6892 -4.1213 0.2703 14 14 8.4514 -4.2536 0.1143 15 1 9.2778 -3.1754 0.7141 16 1 8.3277 -5.3763 1.0784 17 1 9.0987 -4.7388 -1.1309 18 6 4.8544 -1.3734 -2.4388 19 6 4.4710 -2.6209 -3.2613 20 6 4.7699 -2.2152 -4.7268 21 6 6.0645 -1.3757 -4.5927 22 6 5.8667 -0.5816 -3.2849 23 6 2.2848 -1.0932 -0.0063 24 6 1.8303 -2.5301 -0.0139 25 1 -0.3633 1.0278 0.0005 26 1 -0.3633 -0.5134 -0.8901 27 1 -0.3633 -0.5141 0.8898 28 1 5.0187 1.9531 -1.0277 29 1 4.4504 2.6376 0.5140 30 1 5.5868 1.2675 0.5135 31 1 5.7784 -4.9086 0.8299 32 1 3.9700 -0.7652 -2.2488 33 1 5.0839 -3.4736 -2.9692 34 1 3.4127 -2.8499 -3.1363 35 1 3.9583 -1.6114 -5.1329 36 1 4.9423 -3.0949 -5.3468 37 1 6.1684 -0.6969 -5.4391 38 1 6.9365 -2.0252 -4.5165 39 1 5.4734 0.4104 -3.5064 40 1 6.8141 -0.4982 -2.7522 41 1 1.7187 -2.8812 1.0120 42 1 0.8732 -2.6057 -0.5300 43 1 2.5703 -3.1425 -0.5290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087199056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:13 Heat of formation + Delta-G solvation = -27.702089 kcal Electronic energy + Delta-G solvation = -25088.314990 eV Core-core repulsion = 21713.957777 eV Total energy + Delta-G solvation = -3374.357213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95081 -38.61055 -36.52923 -33.68774 -33.20593 -32.48244 -31.23515 -29.37860 -28.00781 -27.55190 -26.79097 -25.09409 -23.80781 -21.91007 -20.04918 -19.61230 -19.19987 -18.38142 -16.60116 -15.90878 -15.88690 -15.15656 -14.84300 -14.44950 -14.05515 -13.72468 -13.55625 -13.18964 -13.08516 -12.79745 -12.62680 -12.40934 -12.36228 -12.34073 -12.11772 -11.94617 -11.67684 -11.34323 -11.00662 -10.92135 -10.74637 -10.59628 -10.51825 -10.42748 -10.40979 -10.16171 -9.99101 -9.77361 -8.69826 -8.65403 -8.05110 -7.64969 -7.00693 -6.04896 -3.76379 2.19908 2.93560 3.30618 3.34039 3.41174 3.44722 4.18041 4.41450 4.93697 5.09150 5.23007 5.30348 5.31680 5.36424 5.45574 5.54122 5.57458 5.60678 5.79214 5.81879 5.85268 5.94121 6.00018 6.15804 6.18122 6.20115 6.24966 6.27181 6.36017 6.40016 6.43936 6.50327 6.55068 6.60492 6.68006 6.82931 6.86477 7.03072 7.11881 7.27039 7.70252 7.71553 8.36052 9.14096 9.27814 9.74922 10.41525 11.04161 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.007294 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.968134 B = 3837.715283 C = 4538.473454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.039 4.039 3 O -0.183 6.183 4 C -0.002 4.002 5 C -0.066 4.066 6 C -0.173 4.173 7 C 0.541 3.459 8 O -0.532 6.532 9 N -0.435 5.435 10 C -0.345 4.345 11 H 0.079 0.921 12 C 0.073 3.927 13 N -0.827 5.827 14 Si 0.908 3.092 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.279 1.279 18 C 0.134 3.866 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.079 4.079 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 7.151 -6.342 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 O -0.082 6.082 4 C -0.053 4.053 5 C -0.123 4.123 6 C -0.178 4.178 7 C 0.327 3.673 8 O -0.410 6.410 9 N -0.156 5.156 10 C -0.472 4.472 11 H 0.097 0.903 12 C -0.137 4.137 13 N -0.460 5.460 14 Si 0.736 3.264 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.205 1.205 18 C 0.029 3.971 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.145 4.145 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.320 7.143 -5.601 11.661 hybrid contribution 0.717 -0.601 0.225 0.962 sum -6.603 6.542 -5.376 10.737 Atomic orbital electron populations 1.20167 0.85605 1.03118 1.03030 1.21785 0.93299 0.83798 1.09892 1.83545 1.16285 1.35030 1.73307 1.22371 0.82612 0.93929 1.06354 1.20254 0.92286 0.96528 1.03211 1.21738 0.95199 0.92936 1.07901 1.16936 0.83427 0.81977 0.84927 1.90628 1.63500 1.55791 1.31064 1.43248 1.23814 1.46887 1.01658 1.18772 0.93482 1.11569 1.23343 0.90344 1.25194 0.97084 0.95157 0.96308 1.69824 1.28924 1.18410 1.28837 0.86346 0.83906 0.78146 0.78019 1.20087 1.21355 1.20515 1.21613 0.94320 0.94625 0.86560 1.22645 1.00439 1.00080 0.93031 1.22446 0.97183 0.98948 0.97464 1.22251 0.98184 0.98279 0.96710 1.22457 1.00936 0.97502 0.96020 1.21216 0.91209 0.96077 1.06020 1.20121 1.00503 0.90877 1.02038 0.91150 0.90241 0.90281 0.90355 0.91055 0.89072 0.92706 0.91592 0.89170 0.93147 0.92634 0.92372 0.92975 0.91575 0.93096 0.90624 0.91727 0.92563 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 9.93 36.01 0.36 -0.38 16 2 C -0.04 -0.67 7.28 -35.74 -0.26 -0.94 16 3 O -0.18 -3.33 10.52 7.59 0.08 -3.25 16 4 C 0.00 -0.05 7.30 -34.94 -0.26 -0.30 16 5 C -0.07 -1.06 10.24 36.01 0.37 -0.69 16 6 C -0.17 -3.89 3.97 -103.28 -0.41 -4.30 16 7 C 0.54 14.26 6.41 -12.58 -0.08 14.18 16 8 O -0.53 -16.42 14.73 5.25 0.08 -16.34 16 9 N -0.44 -10.81 2.46 -107.79 -0.27 -11.07 16 10 C -0.34 -9.22 7.47 -14.98 -0.11 -9.34 16 11 H 0.08 2.03 7.05 -52.49 -0.37 1.66 16 12 C 0.07 2.04 4.33 -17.46 -0.08 1.97 16 13 N -0.83 -24.21 11.66 55.50 0.65 -23.56 16 14 Si 0.91 21.93 29.60 -169.99 -5.03 16.90 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.13 2.74 3.20 -66.81 -0.21 2.53 16 19 C -0.12 -2.39 6.42 -25.03 -0.16 -2.55 16 20 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 21 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 22 C -0.13 -2.31 6.19 -25.61 -0.16 -2.47 16 23 C -0.14 -2.86 6.37 -102.49 -0.65 -3.52 16 24 C -0.08 -1.46 10.15 36.01 0.37 -1.09 16 25 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.60 7.94 -51.92 -0.41 1.19 16 31 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 32 H 0.07 1.36 6.20 -51.92 -0.32 1.04 16 33 H 0.09 2.03 7.12 -51.93 -0.37 1.66 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.46 6.82 -51.93 -0.35 1.11 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 43 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -33.11 350.49 -7.71 -40.82 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.87 Total: 2.18 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.63 Total: -10.96 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.38 Total: -34.63 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.16 Total: -19.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.11 -7.71 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087199056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.120 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds