Wall clock time and date at job start Tue Mar 31 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34223 * 125.42741 * 2 1 4 4 C 1.33667 * 110.90987 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.80756 * 180.02562 * 4 3 2 6 6 C 1.36496 * 108.38237 * 0.02562 * 4 3 2 7 7 C 1.47296 * 127.20110 * 179.97438 * 6 4 3 8 8 O 1.21635 * 120.00478 * 90.01743 * 7 6 4 9 9 N 1.34771 * 119.99478 * 270.29360 * 7 6 4 10 10 C 1.36968 * 120.00213 * 179.72215 * 9 7 6 11 11 H 1.07998 * 120.00117 * 222.37376 * 10 9 7 12 12 C 1.38982 * 119.99552 * 42.37299 * 10 9 7 13 13 N 1.31411 * 120.00044 * 19.63063 * 12 10 9 14 14 Si 1.86800 * 119.99799 * 199.63359 * 12 10 9 15 15 H 1.48508 * 109.47121 * 59.99989 * 14 12 10 16 16 H 1.48500 * 109.47042 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47117 * 300.00061 * 14 12 10 18 18 C 1.46503 * 120.00502 * 359.72781 * 9 7 6 19 19 C 1.54270 * 110.03145 * 240.13239 * 18 9 7 20 20 C 1.54970 * 104.15508 * 217.13342 * 19 18 9 21 21 C 1.54883 * 102.78166 * 37.88322 * 20 19 18 22 22 C 1.53870 * 110.03911 * 122.90577 * 18 9 7 23 23 C 1.34169 * 125.43017 * 180.33113 * 2 1 3 24 24 C 1.50704 * 127.01548 * 359.96522 * 23 2 1 25 25 H 1.09007 * 109.46803 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47157 * 119.97629 * 1 2 3 27 27 H 1.08997 * 109.47220 * 239.97990 * 1 2 3 28 28 H 1.09001 * 109.47510 * 269.97516 * 5 4 3 29 29 H 1.08999 * 109.47368 * 29.97526 * 5 4 3 30 30 H 1.09007 * 109.47076 * 149.97687 * 5 4 3 31 31 H 0.96999 * 119.99678 * 174.86427 * 13 12 10 32 32 H 1.09007 * 110.01189 * 1.51401 * 18 9 7 33 33 H 1.09002 * 110.48264 * 335.77584 * 19 18 9 34 34 H 1.08995 * 110.48994 * 98.42012 * 19 18 9 35 35 H 1.09003 * 110.71536 * 279.56797 * 20 19 18 36 36 H 1.09000 * 110.92155 * 156.29777 * 20 19 18 37 37 H 1.08994 * 110.48763 * 203.40731 * 21 20 19 38 38 H 1.08997 * 110.59937 * 80.81626 * 21 20 19 39 39 H 1.08996 * 110.03657 * 238.56909 * 22 18 9 40 40 H 1.09007 * 110.02880 * 0.02562 * 22 18 9 41 41 H 1.09007 * 109.46773 * 270.14632 * 24 23 2 42 42 H 1.08999 * 109.47292 * 30.14888 * 24 23 2 43 43 H 1.08997 * 109.46758 * 150.15528 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2850 1.0937 0.0000 4 6 3.5790 0.7586 -0.0006 5 6 4.7390 1.7208 -0.0002 6 6 3.6710 -0.6032 -0.0015 7 6 4.9016 -1.4127 -0.0029 8 8 5.4104 -1.7479 1.0498 9 7 5.4670 -1.7772 -1.1708 10 6 6.6145 -2.5251 -1.1722 11 1 7.4115 -2.2898 -1.8619 12 6 6.7530 -3.5867 -0.2860 13 7 5.6892 -4.1213 0.2703 14 14 8.4514 -4.2536 0.1143 15 1 9.2778 -3.1754 0.7141 16 1 8.3277 -5.3763 1.0784 17 1 9.0987 -4.7388 -1.1309 18 6 4.8544 -1.3734 -2.4388 19 6 4.4710 -2.6209 -3.2613 20 6 4.7699 -2.2152 -4.7268 21 6 6.0645 -1.3757 -4.5927 22 6 5.8667 -0.5816 -3.2849 23 6 2.2848 -1.0932 -0.0063 24 6 1.8303 -2.5301 -0.0139 25 1 -0.3633 1.0278 0.0005 26 1 -0.3633 -0.5134 -0.8901 27 1 -0.3633 -0.5141 0.8898 28 1 5.0187 1.9531 -1.0277 29 1 4.4504 2.6376 0.5140 30 1 5.5868 1.2675 0.5135 31 1 5.7784 -4.9086 0.8299 32 1 3.9700 -0.7652 -2.2488 33 1 5.0839 -3.4736 -2.9692 34 1 3.4127 -2.8499 -3.1363 35 1 3.9583 -1.6114 -5.1329 36 1 4.9423 -3.0949 -5.3468 37 1 6.1684 -0.6969 -5.4391 38 1 6.9365 -2.0252 -4.5165 39 1 5.4734 0.4104 -3.5064 40 1 6.8141 -0.4982 -2.7522 41 1 1.7187 -2.8812 1.0120 42 1 0.8732 -2.6057 -0.5300 43 1 2.5703 -3.1425 -0.5290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087199056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:12 Heat of formation + Delta-G solvation = -46.945097 kcal Electronic energy + Delta-G solvation = -25089.149430 eV Core-core repulsion = 21713.957777 eV Total energy + Delta-G solvation = -3375.191653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.42823 -40.40480 -38.26364 -35.22535 -35.04754 -34.05469 -33.11880 -30.53137 -29.45329 -29.08870 -28.42656 -26.95854 -25.21065 -23.65617 -21.39927 -21.25694 -20.91207 -19.98489 -18.27853 -17.68300 -17.38239 -16.78604 -16.56292 -16.15148 -15.77670 -15.27108 -15.18278 -14.57786 -14.37097 -14.35457 -14.06798 -13.98843 -13.81376 -13.61414 -13.43320 -13.26646 -13.25235 -12.96136 -12.83102 -12.74727 -12.55407 -12.28394 -12.11091 -11.99121 -11.84918 -11.79779 -11.42903 -11.34667 -10.74600 -10.37097 -9.97319 -9.10527 -9.05163 -8.16835 -5.90769 0.75181 1.35328 1.38592 1.44967 1.47665 1.92473 2.22862 2.44657 3.20567 3.27232 3.65923 3.87258 3.89271 4.00259 4.09673 4.16298 4.39040 4.44104 4.49796 4.57750 4.59581 4.68028 4.68807 4.73980 4.80522 4.81260 4.84370 4.93243 4.94103 5.00560 5.03579 5.09459 5.17532 5.18123 5.27973 5.34022 5.43522 5.54693 5.58867 5.64242 5.68011 6.23831 6.26044 7.06837 7.26416 7.72899 8.40773 8.92368 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.007294 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.968134 B = 3837.715283 C = 4538.473454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.015 4.015 3 O -0.176 6.176 4 C 0.006 3.994 5 C -0.065 4.065 6 C -0.218 4.218 7 C 0.535 3.465 8 O -0.596 6.596 9 N -0.440 5.440 10 C -0.350 4.350 11 H 0.084 0.916 12 C 0.022 3.978 13 N -0.863 5.863 14 Si 0.965 3.035 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.255 1.255 18 C 0.129 3.871 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.182 4.182 24 C -0.067 4.067 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 9.276 -8.637 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 O -0.074 6.074 4 C -0.044 4.044 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.324 3.676 8 O -0.479 6.479 9 N -0.159 5.159 10 C -0.477 4.477 11 H 0.101 0.899 12 C -0.185 4.185 13 N -0.497 5.497 14 Si 0.791 3.209 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.179 1.179 18 C 0.025 3.975 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.184 4.184 24 C -0.123 4.123 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.863 9.279 -7.964 15.102 hybrid contribution 1.120 -1.184 0.919 1.871 sum -7.742 8.095 -7.045 13.233 Atomic orbital electron populations 1.20473 0.81237 1.05309 1.04869 1.22670 0.95302 0.82307 1.06063 1.83599 1.15715 1.35280 1.72780 1.22772 0.83845 0.93346 1.04481 1.20359 0.90235 0.96816 1.04721 1.21563 0.94860 0.94239 1.11648 1.17481 0.84266 0.81523 0.84330 1.90558 1.65644 1.58491 1.33163 1.43445 1.23432 1.45920 1.03116 1.19043 0.94548 1.11184 1.22952 0.89862 1.26017 1.00196 0.95893 0.96396 1.69967 1.30829 1.18936 1.30012 0.85451 0.79943 0.77086 0.78465 1.20833 1.21707 1.17926 1.21849 0.95057 0.95491 0.85073 1.22553 0.99458 0.98065 0.96008 1.22411 0.97931 0.99904 0.94482 1.22243 0.97641 0.98394 0.96613 1.22421 0.98926 0.98820 0.96313 1.21396 0.90646 0.97390 1.08926 1.19997 1.01129 0.89807 1.01398 0.88818 0.87928 0.88688 0.88174 0.87716 0.91564 0.93491 0.91565 0.93218 0.93334 0.90010 0.90959 0.89393 0.92873 0.90320 0.92856 0.92674 0.88368 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 9.93 71.24 0.71 -0.50 16 2 C -0.01 -0.47 7.28 24.76 0.18 -0.29 16 3 O -0.18 -5.98 10.52 4.26 0.04 -5.94 16 4 C 0.01 0.24 7.30 25.28 0.18 0.43 16 5 C -0.07 -2.00 10.24 71.24 0.73 -1.27 16 6 C -0.22 -10.08 3.97 -19.00 -0.08 -10.15 16 7 C 0.54 29.77 6.41 86.63 0.56 30.33 16 8 O -0.60 -39.27 14.73 -4.14 -0.06 -39.33 16 9 N -0.44 -22.82 2.46 -613.17 -1.51 -24.33 16 10 C -0.35 -19.54 7.47 84.07 0.63 -18.91 16 11 H 0.08 4.45 7.05 -2.91 -0.02 4.43 16 12 C 0.02 1.26 4.33 84.93 0.37 1.63 16 13 N -0.86 -53.75 11.66 21.67 0.25 -53.50 16 14 Si 0.97 46.78 29.60 68.60 2.03 48.81 16 15 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 17 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.13 5.34 3.20 45.72 0.15 5.49 16 19 C -0.12 -4.77 6.42 31.70 0.20 -4.57 16 20 C -0.11 -3.12 6.91 31.91 0.22 -2.90 16 21 C -0.11 -3.18 6.83 31.67 0.22 -2.97 16 22 C -0.13 -4.30 6.19 31.32 0.19 -4.10 16 23 C -0.18 -7.27 6.37 -18.48 -0.12 -7.39 16 24 C -0.07 -2.53 10.15 71.24 0.72 -1.81 16 25 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.38 7.94 -2.38 -0.02 2.36 16 31 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 32 H 0.07 2.72 6.20 -2.38 -0.01 2.70 16 33 H 0.05 2.34 7.12 -2.39 -0.02 2.32 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 2.05 6.82 -2.38 -0.02 2.03 16 41 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 42 H 0.10 2.75 7.90 -2.39 -0.02 2.74 16 43 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.94 350.49 6.61 -72.32 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.99 Total: 18.96 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.86 Total: -16.99 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.26 Total: -77.83 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.02 Total: -45.27 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.94 6.61 -72.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087199056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.378 kcal (2) G-P(sol) polarization free energy of solvation -78.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds