Wall clock time and date at job start Tue Mar 31 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00085 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47194 * 89.99628 * 11 10 8 13 13 H 1.07996 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00084 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99781 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47004 * 89.99784 * 16 14 12 18 18 H 1.48496 * 109.46929 * 210.00163 * 16 14 12 19 19 H 1.48506 * 109.46826 * 329.99822 * 16 14 12 20 20 C 1.46495 * 119.99751 * 0.02562 * 10 8 7 21 21 C 1.52995 * 109.47094 * 120.00426 * 20 10 8 22 22 C 1.53008 * 109.47120 * 239.99920 * 20 10 8 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47428 * 209.99944 * 11 10 8 33 33 H 1.09000 * 109.47343 * 330.00203 * 11 10 8 34 34 H 0.96999 * 119.99611 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47755 * 359.97438 * 20 10 8 36 36 H 1.09004 * 109.47634 * 59.99546 * 21 20 10 37 37 H 1.09006 * 109.47314 * 179.97438 * 21 20 10 38 38 H 1.09005 * 109.47200 * 299.99743 * 21 20 10 39 39 H 1.08994 * 109.47115 * 59.99891 * 22 20 10 40 40 H 1.08993 * 109.47211 * 180.02562 * 22 20 10 41 41 H 1.09003 * 109.46650 * 300.00510 * 22 20 10 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7752 -1.0756 0.0027 9 8 8.2388 0.0451 0.0031 10 7 8.5963 -2.1445 0.0028 11 6 10.0486 -1.9525 0.0039 12 6 10.5457 -1.8873 1.4251 13 1 9.8494 -1.9800 2.2454 14 6 11.8895 -1.7103 1.6781 15 7 12.3232 -1.6538 2.9184 16 14 13.0939 -1.5506 0.2592 17 1 13.2300 -0.1202 -0.1160 18 1 14.4176 -2.0825 0.6714 19 1 12.5913 -2.3223 -0.9058 20 6 8.0363 -3.4982 0.0018 21 6 8.5088 -4.2445 -1.2474 22 6 8.5070 -4.2458 1.2510 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 10.5259 -2.7869 -0.5100 33 1 10.2926 -1.0223 -0.5093 34 1 13.2687 -1.5297 3.0963 35 1 6.9479 -3.4412 0.0015 36 1 9.5973 -4.3016 -1.2467 37 1 8.0925 -5.2520 -1.2480 38 1 8.1735 -3.7120 -2.1375 39 1 8.1705 -3.7141 2.1410 40 1 8.0908 -5.2531 1.2501 41 1 9.5956 -4.3027 1.2517 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098130566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:08 Heat of formation + Delta-G solvation = -48.931874 kcal Electronic energy + Delta-G solvation = -23171.523607 eV Core-core repulsion = 19796.245801 eV Total energy + Delta-G solvation = -3375.277806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36050 -39.22318 -37.54652 -36.04532 -32.80918 -32.15616 -31.17842 -31.08838 -29.51928 -27.28943 -26.83602 -26.04387 -23.11034 -22.31066 -21.52144 -21.14000 -18.43774 -18.27143 -16.94451 -16.72643 -16.11671 -15.88022 -15.47275 -15.02472 -14.39722 -14.34981 -13.99046 -13.75611 -13.67342 -13.58759 -13.44982 -12.79492 -12.73739 -12.50743 -12.21742 -12.08929 -11.89978 -11.76692 -11.65470 -11.46860 -11.06462 -10.95694 -10.90710 -10.83092 -10.55683 -10.42259 -10.12645 -9.49192 -9.11698 -9.06720 -8.58717 -8.10992 -7.81002 -6.08821 -4.06877 1.22971 1.32324 2.86674 3.17937 3.28425 3.34151 3.37056 3.64420 3.92902 4.38976 4.61070 4.71707 4.80848 4.81467 4.98693 5.09745 5.12428 5.17879 5.22980 5.24356 5.38861 5.40329 5.44331 5.49899 5.59279 5.72037 5.86881 5.92749 6.00240 6.14765 6.18726 6.24740 6.27132 6.44531 6.47845 6.65060 6.72429 6.90612 6.94518 7.24414 7.41325 7.59745 8.13468 8.45690 8.84155 8.95711 9.51114 11.04292 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.003459 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.354740 B = 8092.960599 C = 8598.451229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.134 4.134 3 C -0.081 4.081 4 C -0.147 4.147 5 C 0.131 3.869 6 O -0.287 6.287 7 C 0.043 3.957 8 C 0.510 3.490 9 O -0.516 6.516 10 N -0.585 5.585 11 C 0.217 3.783 12 C -0.524 4.524 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.873 3.127 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.131 3.869 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.209 4.209 24 C -0.080 4.080 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.676 -3.739 -7.929 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.099 4.099 4 C -0.166 4.166 5 C 0.085 3.915 6 O -0.199 6.199 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.391 6.391 10 N -0.318 5.318 11 C 0.097 3.903 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.700 3.300 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.027 3.973 21 C -0.222 4.222 22 C -0.216 4.216 23 C -0.227 4.227 24 C -0.098 4.098 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.092 -2.950 -7.819 21.760 hybrid contribution 0.748 -0.265 -0.510 0.943 sum -19.343 -3.215 -8.329 21.304 Atomic orbital electron populations 1.20694 0.91225 1.02500 1.01964 1.19804 0.96106 0.93115 1.04373 1.20829 0.92886 0.97733 0.98410 1.20475 0.93707 0.96595 1.05805 1.19146 0.82489 0.94307 0.95576 1.86202 1.15710 1.30018 1.87957 1.22652 0.92924 0.85118 1.02916 1.19706 0.86798 0.85559 0.78473 1.90721 1.76810 1.23289 1.48283 1.47960 1.08172 1.04006 1.71703 1.19669 0.74809 0.97213 0.98614 1.21320 0.93620 1.50176 0.91144 0.90486 1.24845 0.98118 0.94582 0.95447 1.69890 1.15153 1.49910 1.18552 0.86902 0.80898 0.79177 0.83022 1.19920 1.21114 1.19103 1.21083 0.96913 0.83084 0.96222 1.22182 1.03100 0.99721 0.97152 1.22148 1.04503 0.98155 0.96754 1.21274 0.95425 0.97116 1.08932 1.20794 0.93204 0.97623 0.98163 0.91600 0.91834 0.91781 0.85487 0.84950 0.89401 0.89691 0.94786 0.94600 0.92582 0.90885 0.91357 0.91813 0.92770 0.92334 0.93033 0.89819 0.85415 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.13 -1.32 5.88 -104.60 -0.62 -1.94 16 3 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 4 C -0.15 -1.90 9.99 -39.44 -0.39 -2.29 16 5 C 0.13 1.87 6.69 -39.22 -0.26 1.61 16 6 O -0.29 -4.96 9.67 -39.35 -0.38 -5.34 16 7 C 0.04 0.66 3.53 36.00 0.13 0.79 16 8 C 0.51 10.60 7.75 -10.99 -0.09 10.51 16 9 O -0.52 -13.29 16.08 -14.35 -0.23 -13.52 16 10 N -0.58 -11.71 2.39 -167.47 -0.40 -12.11 16 11 C 0.22 5.17 3.66 -5.19 -0.02 5.16 16 12 C -0.52 -14.61 8.38 -34.44 -0.29 -14.90 16 13 H 0.08 2.35 7.87 -52.49 -0.41 1.94 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 16 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 17 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 20 C 0.13 1.98 3.17 -67.93 -0.22 1.76 16 21 C -0.16 -2.12 9.17 37.16 0.34 -1.78 16 22 C -0.16 -2.51 8.47 37.16 0.31 -2.19 16 23 C -0.21 -2.46 9.04 -39.44 -0.36 -2.82 16 24 C -0.08 -0.81 9.69 -39.61 -0.38 -1.20 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.09 1.18 7.32 -51.93 -0.38 0.80 16 31 H 0.09 1.04 7.29 -51.93 -0.38 0.66 16 32 H 0.03 0.77 5.48 -51.93 -0.28 0.48 16 33 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 36 H 0.07 1.00 6.66 -51.93 -0.35 0.65 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 42 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 43 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -34.34 350.74 -8.12 -42.46 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.54 Total: 0.03 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.96 Total: -6.93 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.37 Total: -38.68 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.61 Total: -18.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.34 -8.12 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098130566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.477 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds