Wall clock time and date at job start Tue Mar 31 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99926 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00085 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47194 * 89.99628 * 11 10 8 13 13 H 1.07996 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00084 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99781 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47004 * 89.99784 * 16 14 12 18 18 H 1.48496 * 109.46929 * 210.00163 * 16 14 12 19 19 H 1.48506 * 109.46826 * 329.99822 * 16 14 12 20 20 C 1.46495 * 119.99751 * 0.02562 * 10 8 7 21 21 C 1.52995 * 109.47094 * 120.00426 * 20 10 8 22 22 C 1.53008 * 109.47120 * 239.99920 * 20 10 8 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47428 * 209.99944 * 11 10 8 33 33 H 1.09000 * 109.47343 * 330.00203 * 11 10 8 34 34 H 0.96999 * 119.99611 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.47755 * 359.97438 * 20 10 8 36 36 H 1.09004 * 109.47634 * 59.99546 * 21 20 10 37 37 H 1.09006 * 109.47314 * 179.97438 * 21 20 10 38 38 H 1.09005 * 109.47200 * 299.99743 * 21 20 10 39 39 H 1.08994 * 109.47115 * 59.99891 * 22 20 10 40 40 H 1.08993 * 109.47211 * 180.02562 * 22 20 10 41 41 H 1.09003 * 109.46650 * 300.00510 * 22 20 10 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7752 -1.0756 0.0027 9 8 8.2388 0.0451 0.0031 10 7 8.5963 -2.1445 0.0028 11 6 10.0486 -1.9525 0.0039 12 6 10.5457 -1.8873 1.4251 13 1 9.8494 -1.9800 2.2454 14 6 11.8895 -1.7103 1.6781 15 7 12.3232 -1.6538 2.9184 16 14 13.0939 -1.5506 0.2592 17 1 13.2300 -0.1202 -0.1160 18 1 14.4176 -2.0825 0.6714 19 1 12.5913 -2.3223 -0.9058 20 6 8.0363 -3.4982 0.0018 21 6 8.5088 -4.2445 -1.2474 22 6 8.5070 -4.2458 1.2510 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 10.5259 -2.7869 -0.5100 33 1 10.2926 -1.0223 -0.5093 34 1 13.2687 -1.5297 3.0963 35 1 6.9479 -3.4412 0.0015 36 1 9.5973 -4.3016 -1.2467 37 1 8.0925 -5.2520 -1.2480 38 1 8.1735 -3.7120 -2.1375 39 1 8.1705 -3.7141 2.1410 40 1 8.0908 -5.2531 1.2501 41 1 9.5956 -4.3027 1.2517 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098130566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:08 Heat of formation + Delta-G solvation = -70.057846 kcal Electronic energy + Delta-G solvation = -23172.439698 eV Core-core repulsion = 19796.245801 eV Total energy + Delta-G solvation = -3376.193897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52822 -40.56268 -38.59182 -37.60225 -34.90492 -32.99284 -32.64901 -32.01111 -31.08383 -28.81326 -27.98457 -26.92509 -24.56771 -23.66151 -22.79264 -22.11386 -19.81913 -19.44669 -19.09111 -18.08804 -17.38290 -17.20664 -16.61400 -16.25526 -16.00397 -15.45805 -15.20196 -15.01408 -14.89688 -14.55071 -14.44241 -14.39730 -13.96886 -13.81150 -13.62994 -13.37303 -13.05875 -12.90671 -12.82674 -12.67100 -12.41541 -12.39592 -12.31703 -11.93967 -11.82779 -11.80924 -11.75018 -11.57026 -10.81228 -10.72079 -9.95280 -9.51652 -9.01201 -8.31989 -6.34877 0.39635 0.45203 1.30451 1.35525 1.42424 1.54822 1.67531 2.30749 2.60914 2.79840 3.01968 3.41047 3.78073 3.92165 3.96476 4.00593 4.03624 4.12102 4.24348 4.35727 4.38941 4.48005 4.61392 4.70711 4.85449 4.87360 4.88006 4.89751 4.93289 5.02694 5.07282 5.12707 5.19389 5.38601 5.38891 5.40788 5.45952 5.57525 5.61730 5.70146 5.88180 6.24556 6.39169 6.59945 6.66157 7.18829 7.32107 8.84674 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.003459 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.354740 B = 8092.960599 C = 8598.451229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.170 4.170 5 C 0.096 3.904 6 O -0.325 6.325 7 C 0.055 3.945 8 C 0.497 3.503 9 O -0.582 6.582 10 N -0.587 5.587 11 C 0.226 3.774 12 C -0.522 4.522 13 H 0.034 0.966 14 C 0.010 3.990 15 N -0.945 5.945 16 Si 0.940 3.060 17 H -0.281 1.281 18 H -0.276 1.276 19 H -0.237 1.237 20 C 0.122 3.878 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.209 4.209 24 C -0.082 4.082 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.148 0.852 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.535 -6.105 -10.046 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.102 4.102 4 C -0.188 4.188 5 C 0.052 3.948 6 O -0.239 6.239 7 C -0.023 4.023 8 C 0.285 3.715 9 O -0.462 6.462 10 N -0.319 5.319 11 C 0.104 3.896 12 C -0.560 4.560 13 H 0.052 0.948 14 C -0.187 4.187 15 N -0.586 5.586 16 Si 0.763 3.237 17 H -0.206 1.206 18 H -0.201 1.201 19 H -0.160 1.160 20 C 0.020 3.980 21 C -0.216 4.216 22 C -0.211 4.211 23 C -0.228 4.228 24 C -0.100 4.100 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.166 0.834 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.999 -5.376 -9.950 25.630 hybrid contribution 1.463 0.473 0.238 1.556 sum -21.536 -4.903 -9.712 24.128 Atomic orbital electron populations 1.20763 0.88849 1.03643 1.03023 1.20258 0.97874 0.92713 1.02342 1.21118 0.91910 0.99363 0.97790 1.20655 0.94961 0.96202 1.07018 1.19427 0.81319 0.95864 0.98219 1.86138 1.17707 1.30984 1.89051 1.22589 0.88587 0.85356 1.05747 1.20752 0.89339 0.84630 0.76817 1.90677 1.78442 1.25835 1.51222 1.48078 1.06719 1.06311 1.70831 1.19309 0.77872 0.96773 0.95655 1.21499 0.93113 1.49206 0.92208 0.94779 1.25782 1.00337 0.94325 0.98275 1.70042 1.15763 1.51732 1.21070 0.85830 0.78496 0.79016 0.80334 1.20647 1.20076 1.15969 1.21556 0.99225 0.80354 0.96880 1.22162 1.01883 1.01555 0.96023 1.22088 1.02141 1.00500 0.96344 1.21525 0.96277 0.96776 1.08177 1.21205 0.92732 0.99045 0.97018 0.90442 0.90518 0.90926 0.83337 0.86065 0.87158 0.85604 0.92646 0.96886 0.92432 0.86625 0.93461 0.88066 0.91731 0.94837 0.88680 0.93572 0.83414 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.13 -2.22 5.88 -19.85 -0.12 -2.33 16 3 C -0.08 -1.65 9.69 22.25 0.22 -1.43 16 4 C -0.17 -4.42 9.99 22.36 0.22 -4.20 16 5 C 0.10 2.71 6.69 22.50 0.15 2.86 16 6 O -0.33 -11.42 9.67 -73.44 -0.71 -12.13 16 7 C 0.06 1.63 3.53 71.23 0.25 1.88 16 8 C 0.50 20.98 7.75 87.65 0.68 21.66 16 9 O -0.58 -31.55 16.08 16.02 0.26 -31.29 16 10 N -0.59 -23.46 2.39 -802.16 -1.91 -25.38 16 11 C 0.23 10.96 3.66 85.63 0.31 11.27 16 12 C -0.52 -30.40 8.38 25.60 0.21 -30.18 16 13 H 0.03 2.22 7.87 -2.91 -0.02 2.19 16 14 C 0.01 0.62 5.47 84.66 0.46 1.08 16 15 N -0.95 -60.12 13.96 21.45 0.30 -59.83 16 16 Si 0.94 44.84 27.47 68.60 1.88 46.72 16 17 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 20 C 0.12 3.36 3.17 44.99 0.14 3.51 16 21 C -0.16 -3.53 9.17 71.98 0.66 -2.87 16 22 C -0.15 -4.69 8.47 71.98 0.61 -4.08 16 23 C -0.21 -4.38 9.04 22.36 0.20 -4.17 16 24 C -0.08 -1.39 9.69 22.25 0.22 -1.17 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 27 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.11 2.73 7.32 -2.39 -0.02 2.71 16 31 H 0.13 2.64 7.29 -2.39 -0.02 2.62 16 32 H 0.06 2.46 5.48 -2.39 -0.01 2.45 16 33 H 0.01 0.70 6.85 -2.39 -0.02 0.68 16 34 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.12 2.24 5.77 -2.39 -0.01 2.22 16 36 H 0.05 1.26 6.66 -2.39 -0.02 1.24 16 37 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.75 6.92 -2.39 -0.02 1.74 16 42 H 0.15 2.34 6.30 -2.91 -0.02 2.33 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -82.39 350.74 5.69 -76.70 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.94 Total: 13.74 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.94 Total: -8.54 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -1.62 Total: -85.20 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.45 Total: -43.42 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -82.39 5.69 -76.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098130566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.638 kcal (2) G-P(sol) polarization free energy of solvation -82.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds