Wall clock time and date at job start Tue Mar 31 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38124 * 119.94284 * 179.79461 * 4 3 2 6 6 C 1.50703 * 119.97190 * 180.21003 * 5 4 3 7 7 C 1.50695 * 109.47051 * 270.27178 * 6 5 4 8 8 O 1.21282 * 120.00501 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00005 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99921 * 0.02562 * 9 7 6 11 11 C 1.46501 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.08997 * 109.47243 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47130 * 120.00210 * 11 9 7 14 14 C 1.50701 * 109.47056 * 240.00181 * 11 9 7 15 15 H 1.08007 * 119.99992 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00362 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99716 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00355 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47337 * 90.00168 * 18 16 14 20 20 H 1.48502 * 109.47344 * 210.00193 * 18 16 14 21 21 H 1.48504 * 109.46950 * 330.00032 * 18 16 14 22 22 C 1.38282 * 120.05644 * 0.48108 * 5 4 3 23 23 C 1.38240 * 120.11355 * 359.74998 * 22 5 4 24 24 C 1.38169 * 120.05585 * 0.02562 * 23 22 5 25 25 C 1.50702 * 120.03323 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47073 * 30.27270 * 6 5 4 31 31 H 1.09002 * 109.47133 * 150.27518 * 6 5 4 32 32 H 1.08997 * 109.47593 * 90.00070 * 10 9 7 33 33 H 1.09006 * 109.46865 * 210.00208 * 10 9 7 34 34 H 1.09006 * 109.47065 * 329.99337 * 10 9 7 35 35 H 1.08998 * 109.46976 * 299.99463 * 13 11 9 36 36 H 1.09001 * 109.47017 * 60.00112 * 13 11 9 37 37 H 1.08999 * 109.46954 * 180.02562 * 13 11 9 38 38 H 0.96995 * 120.00104 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.94801 * 179.72276 * 22 5 4 40 40 H 1.08003 * 119.97763 * 179.97438 * 23 22 5 41 41 H 1.09001 * 109.46620 * 270.01733 * 25 24 23 42 42 H 1.08992 * 109.46849 * 30.01447 * 25 24 23 43 43 H 1.09000 * 109.47520 * 150.01757 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0015 6 6 1.1019 4.8699 -0.0031 7 6 0.8290 5.2899 -1.4243 8 8 1.2570 4.6270 -2.3454 9 7 0.1085 6.4017 -1.6720 10 6 -0.4089 7.2021 -0.5595 11 6 -0.1572 6.8097 -3.0537 12 1 0.3040 6.0975 -3.7380 13 6 -1.6679 6.8436 -3.2940 14 6 0.4203 8.1810 -3.2924 15 1 0.9343 8.6969 -2.4948 16 6 0.2935 8.7768 -4.5294 17 7 -0.3310 8.1480 -5.5011 18 14 1.0099 10.4763 -4.8255 19 1 2.4086 10.3468 -5.3071 20 1 0.1981 11.1846 -5.8474 21 1 0.9926 11.2486 -3.5571 22 6 3.3018 3.6758 -0.0015 23 6 4.0559 2.5172 -0.0005 24 6 3.4311 1.2849 -0.0001 25 6 4.2537 0.0222 0.0004 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2128 2.3203 -0.0100 30 1 0.1573 4.6918 0.5109 31 1 1.6515 5.6591 0.5099 32 1 0.3252 7.9594 -0.2844 33 1 -1.3364 7.6882 -0.8622 34 1 -0.6007 6.5542 0.2959 35 1 -2.0855 5.8517 -3.1214 36 1 -2.1287 7.5560 -2.6097 37 1 -1.8655 7.1467 -4.3221 38 1 -0.4206 8.5672 -6.3712 39 1 3.7922 4.6381 -0.0026 40 1 5.1344 2.5753 -0.0009 41 1 4.4523 -0.2824 -1.0272 42 1 5.1975 0.2037 0.5144 43 1 3.7063 -0.7680 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:04 Heat of formation + Delta-G solvation = -53.489771 kcal Electronic energy + Delta-G solvation = -23321.209443 eV Core-core repulsion = 19945.733992 eV Total energy + Delta-G solvation = -3375.475451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28993 -39.03326 -37.37154 -35.31950 -33.61613 -32.80347 -30.18807 -30.02507 -28.68362 -27.57191 -26.11839 -25.26899 -24.99576 -22.15597 -21.59244 -20.58243 -18.36700 -17.34880 -16.62460 -16.34892 -16.11034 -15.74255 -15.45930 -15.16687 -14.73430 -14.31930 -14.00027 -13.77540 -13.50142 -12.90129 -12.78213 -12.70489 -12.51658 -12.23195 -12.01012 -11.94143 -11.67990 -11.54489 -11.41439 -11.16854 -11.06386 -10.94722 -10.82589 -10.76114 -10.64464 -10.23434 -10.16044 -9.18365 -8.98475 -8.54679 -8.41495 -7.93991 -7.56893 -6.06703 -4.14680 1.42730 1.59463 3.27179 3.29260 3.33412 3.34683 3.42568 3.74359 4.13536 4.41101 4.73907 4.86239 5.04037 5.07425 5.12409 5.22643 5.23867 5.30852 5.33597 5.45260 5.55348 5.67352 5.68896 5.70182 5.74440 5.75664 5.94278 6.06174 6.25508 6.29350 6.41242 6.57720 6.75494 6.76010 6.81649 6.89320 7.05956 7.43698 7.45526 7.53626 7.72309 8.02237 8.20598 8.54753 8.84683 9.08685 9.51996 10.98631 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.003593 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.746137 B = 7791.502695 C = 8147.163292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.188 4.188 5 C -0.021 4.021 6 C -0.106 4.106 7 C 0.505 3.495 8 O -0.544 6.544 9 N -0.595 5.595 10 C 0.086 3.914 11 C 0.258 3.742 12 H 0.063 0.937 13 C -0.147 4.147 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.137 4.137 23 C -0.083 4.083 24 C -0.125 4.125 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.010 0.990 36 H 0.030 0.970 37 H 0.093 0.907 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -11.382 14.654 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.207 4.207 5 C -0.021 4.021 6 C -0.146 4.146 7 C 0.291 3.709 8 O -0.422 6.422 9 N -0.327 5.327 10 C -0.058 4.058 11 C 0.157 3.843 12 H 0.081 0.919 13 C -0.205 4.205 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.155 4.155 23 C -0.101 4.101 24 C -0.125 4.125 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.301 -11.880 13.947 18.465 hybrid contribution -0.048 1.360 -0.234 1.381 sum 2.252 -10.520 13.714 17.430 Atomic orbital electron populations 1.23032 0.78660 1.03575 1.01553 1.86014 1.21118 1.26976 1.89004 1.18713 0.91720 0.83943 0.97798 1.20985 0.99710 0.91755 1.08235 1.19134 0.93596 0.93182 0.96196 1.20786 1.00778 0.96111 0.96885 1.20206 0.79203 0.81392 0.90106 1.90680 1.51547 1.53782 1.46155 1.48244 1.51367 1.23788 1.09299 1.21564 1.00052 0.95383 0.88799 1.18925 0.92808 0.96067 0.76451 0.91938 1.22091 0.97587 0.96704 1.04125 1.21323 1.36273 1.01390 0.97353 0.92316 1.24899 0.95114 0.97995 0.95819 1.69881 1.41978 1.37880 1.02919 0.86496 0.79123 0.83805 0.77962 1.20610 1.21133 1.19930 1.20886 0.93117 0.98501 1.02987 1.20781 0.99531 0.90997 0.98828 1.19178 0.90542 0.96086 1.06737 1.20559 0.98478 0.94621 1.02094 0.92843 0.92452 0.88488 0.85787 0.88729 0.88332 0.93288 0.90885 0.92991 0.97069 0.95108 0.88826 0.92706 0.86002 0.85568 0.91617 0.91968 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.19 9.54 -19.44 -0.19 -4.37 16 3 C 0.12 1.80 6.66 -39.22 -0.26 1.54 16 4 C -0.19 -2.82 8.69 -39.44 -0.34 -3.16 16 5 C -0.02 -0.32 4.37 -104.65 -0.46 -0.78 16 6 C -0.11 -1.58 4.38 -29.04 -0.13 -1.71 16 7 C 0.50 10.45 7.67 -10.99 -0.08 10.37 16 8 O -0.54 -13.70 15.36 5.56 0.09 -13.61 16 9 N -0.60 -12.64 2.75 -175.26 -0.48 -13.12 16 10 C 0.09 1.41 9.48 59.84 0.57 1.97 16 11 C 0.26 6.63 2.63 -69.08 -0.18 6.44 16 12 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 13 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 14 C -0.52 -14.26 8.37 -34.44 -0.29 -14.55 16 15 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.14 -2.03 9.70 -39.56 -0.38 -2.41 16 23 C -0.08 -1.12 9.70 -39.61 -0.38 -1.51 16 24 C -0.12 -1.72 5.89 -104.47 -0.62 -2.34 16 25 C -0.10 -1.10 9.79 36.01 0.35 -0.75 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 27 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 30 H 0.09 1.17 7.35 -51.93 -0.38 0.79 16 31 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 43 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -33.01 351.02 -7.16 -40.17 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.50 Total: 1.37 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.98 Total: -7.14 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.15 Total: -37.80 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.10 Total: -17.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.01 -7.16 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.322 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds