Wall clock time and date at job start Tue Mar 31 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38124 * 119.94284 * 179.79461 * 4 3 2 6 6 C 1.50703 * 119.97190 * 180.21003 * 5 4 3 7 7 C 1.50695 * 109.47051 * 270.27178 * 6 5 4 8 8 O 1.21282 * 120.00501 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00005 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99921 * 0.02562 * 9 7 6 11 11 C 1.46501 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.08997 * 109.47243 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47130 * 120.00210 * 11 9 7 14 14 C 1.50701 * 109.47056 * 240.00181 * 11 9 7 15 15 H 1.08007 * 119.99992 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00362 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99716 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00355 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47337 * 90.00168 * 18 16 14 20 20 H 1.48502 * 109.47344 * 210.00193 * 18 16 14 21 21 H 1.48504 * 109.46950 * 330.00032 * 18 16 14 22 22 C 1.38282 * 120.05644 * 0.48108 * 5 4 3 23 23 C 1.38240 * 120.11355 * 359.74998 * 22 5 4 24 24 C 1.38169 * 120.05585 * 0.02562 * 23 22 5 25 25 C 1.50702 * 120.03323 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.47073 * 30.27270 * 6 5 4 31 31 H 1.09002 * 109.47133 * 150.27518 * 6 5 4 32 32 H 1.08997 * 109.47593 * 90.00070 * 10 9 7 33 33 H 1.09006 * 109.46865 * 210.00208 * 10 9 7 34 34 H 1.09006 * 109.47065 * 329.99337 * 10 9 7 35 35 H 1.08998 * 109.46976 * 299.99463 * 13 11 9 36 36 H 1.09001 * 109.47017 * 60.00112 * 13 11 9 37 37 H 1.08999 * 109.46954 * 180.02562 * 13 11 9 38 38 H 0.96995 * 120.00104 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.94801 * 179.72276 * 22 5 4 40 40 H 1.08003 * 119.97763 * 179.97438 * 23 22 5 41 41 H 1.09001 * 109.46620 * 270.01733 * 25 24 23 42 42 H 1.08992 * 109.46849 * 30.01447 * 25 24 23 43 43 H 1.09000 * 109.47520 * 150.01757 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0015 6 6 1.1019 4.8699 -0.0031 7 6 0.8290 5.2899 -1.4243 8 8 1.2570 4.6270 -2.3454 9 7 0.1085 6.4017 -1.6720 10 6 -0.4089 7.2021 -0.5595 11 6 -0.1572 6.8097 -3.0537 12 1 0.3040 6.0975 -3.7380 13 6 -1.6679 6.8436 -3.2940 14 6 0.4203 8.1810 -3.2924 15 1 0.9343 8.6969 -2.4948 16 6 0.2935 8.7768 -4.5294 17 7 -0.3310 8.1480 -5.5011 18 14 1.0099 10.4763 -4.8255 19 1 2.4086 10.3468 -5.3071 20 1 0.1981 11.1846 -5.8474 21 1 0.9926 11.2486 -3.5571 22 6 3.3018 3.6758 -0.0015 23 6 4.0559 2.5172 -0.0005 24 6 3.4311 1.2849 -0.0001 25 6 4.2537 0.0222 0.0004 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2128 2.3203 -0.0100 30 1 0.1573 4.6918 0.5109 31 1 1.6515 5.6591 0.5099 32 1 0.3252 7.9594 -0.2844 33 1 -1.3364 7.6882 -0.8622 34 1 -0.6007 6.5542 0.2959 35 1 -2.0855 5.8517 -3.1214 36 1 -2.1287 7.5560 -2.6097 37 1 -1.8655 7.1467 -4.3221 38 1 -0.4206 8.5672 -6.3712 39 1 3.7922 4.6381 -0.0026 40 1 5.1344 2.5753 -0.0009 41 1 4.4523 -0.2824 -1.0272 42 1 5.1975 0.2037 0.5144 43 1 3.7063 -0.7680 0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:04 Heat of formation + Delta-G solvation = -73.216763 kcal Electronic energy + Delta-G solvation = -23322.064870 eV Core-core repulsion = 19945.733992 eV Total energy + Delta-G solvation = -3376.330878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39577 -40.53283 -38.44170 -37.08910 -34.94389 -34.53323 -31.80929 -31.08185 -30.06940 -28.41284 -27.57370 -27.28376 -26.19169 -23.17855 -23.15777 -21.89057 -19.96399 -18.54304 -18.40502 -17.81549 -17.40225 -17.03362 -16.66584 -16.47827 -16.17267 -16.01968 -15.11531 -14.85642 -14.69597 -14.40224 -14.26952 -14.03640 -13.80910 -13.46320 -13.33186 -13.01875 -12.95855 -12.91952 -12.84328 -12.70548 -12.64056 -12.53614 -12.19043 -12.16537 -12.09578 -11.94018 -11.73730 -11.18001 -10.68593 -10.48223 -9.64374 -9.30089 -9.00232 -8.14607 -6.31426 0.33825 0.51428 1.40836 1.42300 1.52148 1.84576 2.31585 2.39135 2.49211 2.86482 3.13233 3.62994 3.85830 3.94734 4.05289 4.21691 4.30560 4.34644 4.35969 4.46581 4.57272 4.64072 4.68491 4.71671 4.72879 4.79175 4.81978 4.85720 4.87734 4.96733 5.04923 5.09339 5.30431 5.37377 5.46874 5.54518 5.63235 5.66450 5.68442 5.88184 6.04785 6.16676 6.45070 6.77203 6.86784 7.33558 7.51866 8.89654 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.003593 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.746137 B = 7791.502695 C = 8147.163292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.109 3.891 4 C -0.201 4.201 5 C -0.042 4.042 6 C -0.089 4.089 7 C 0.496 3.504 8 O -0.600 6.600 9 N -0.602 5.602 10 C 0.081 3.919 11 C 0.261 3.739 12 H 0.005 0.995 13 C -0.132 4.132 14 C -0.537 4.537 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.965 3.035 19 H -0.283 1.283 20 H -0.280 1.280 21 H -0.260 1.260 22 C -0.154 4.154 23 C -0.087 4.087 24 C -0.137 4.137 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.019 0.981 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -10.926 16.967 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.064 3.936 4 C -0.219 4.219 5 C -0.043 4.043 6 C -0.129 4.129 7 C 0.285 3.715 8 O -0.482 6.482 9 N -0.333 5.333 10 C -0.062 4.062 11 C 0.159 3.841 12 H 0.023 0.977 13 C -0.191 4.191 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.790 3.210 19 H -0.209 1.209 20 H -0.206 1.206 21 H -0.184 1.184 22 C -0.172 4.172 23 C -0.105 4.105 24 C -0.138 4.138 25 C -0.154 4.154 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.520 -11.412 16.314 20.068 hybrid contribution -0.129 1.124 -0.960 1.484 sum 2.392 -10.288 15.354 18.636 Atomic orbital electron populations 1.23280 0.77054 1.05456 1.01663 1.86000 1.22824 1.26412 1.88858 1.18977 0.92399 0.84370 0.97891 1.21182 1.00374 0.91939 1.08453 1.19316 0.94126 0.93561 0.97269 1.20750 1.02748 0.96607 0.92761 1.21226 0.77806 0.80366 0.92095 1.90649 1.53611 1.55414 1.48547 1.48251 1.51682 1.24631 1.08739 1.21855 0.99794 0.96046 0.88460 1.18501 0.93138 0.94038 0.78456 0.97713 1.21872 0.96725 0.97598 1.02877 1.21597 1.36367 1.01949 0.97659 0.92058 1.25758 0.95422 1.01840 0.95592 1.70031 1.42996 1.39503 1.03285 0.85457 0.77899 0.79307 0.78369 1.20916 1.20589 1.18386 1.21147 0.93306 0.99404 1.03328 1.21117 1.00867 0.90553 0.97984 1.19622 0.90815 0.97345 1.05983 1.20589 0.99057 0.93349 1.02418 0.91502 0.93515 0.85801 0.84924 0.85473 0.85697 0.92520 0.91232 0.88333 0.96208 0.93152 0.91563 0.92702 0.85336 0.83070 0.91590 0.89798 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -8.37 9.54 -92.48 -0.88 -9.25 16 3 C 0.11 3.12 6.66 22.51 0.15 3.27 16 4 C -0.20 -5.88 8.69 22.36 0.19 -5.69 16 5 C -0.04 -1.27 4.37 -19.88 -0.09 -1.36 16 6 C -0.09 -2.48 4.38 29.10 0.13 -2.35 16 7 C 0.50 20.44 7.67 87.65 0.67 21.11 16 8 O -0.60 -31.36 15.36 -3.04 -0.05 -31.41 16 9 N -0.60 -25.25 2.75 -826.79 -2.28 -27.52 16 10 C 0.08 2.42 9.48 127.77 1.21 3.63 16 11 C 0.26 13.75 2.63 44.25 0.12 13.86 16 12 H 0.00 0.31 6.90 -2.39 -0.02 0.29 16 13 C -0.13 -6.42 8.95 71.98 0.64 -5.78 16 14 C -0.54 -29.45 8.37 25.60 0.21 -29.23 16 15 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 16 C 0.01 0.73 5.30 84.65 0.45 1.18 16 17 N -0.92 -53.70 11.32 21.45 0.24 -53.45 16 18 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 C -0.15 -4.43 9.70 22.28 0.22 -4.21 16 23 C -0.09 -2.26 9.70 22.25 0.22 -2.04 16 24 C -0.14 -3.65 5.89 -19.77 -0.12 -3.77 16 25 C -0.10 -1.99 9.79 71.24 0.70 -1.29 16 26 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 27 H 0.05 0.95 7.65 -2.39 -0.02 0.93 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.13 3.46 6.30 -2.91 -0.02 3.45 16 30 H 0.13 2.67 7.35 -2.39 -0.02 2.65 16 31 H 0.13 2.81 8.05 -2.39 -0.02 2.79 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.14 6.43 -2.38 -0.02 2.12 16 34 H 0.10 2.03 6.44 -2.38 -0.02 2.01 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 37 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 43 H 0.07 1.36 7.53 -2.39 -0.02 1.34 16 Total: -1.00 -74.95 351.02 5.88 -69.07 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.00 Total: 18.44 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.82 Total: -11.20 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.03 Total: -80.98 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.93 Total: -40.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.95 5.88 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.151 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds