Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38268 * 119.94722 * 2 1 4 4 C 1.38146 * 120.05592 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94455 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05599 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99919 * 354.58351 * 6 5 4 8 8 H 1.09000 * 109.46887 * 325.24548 * 7 6 5 9 9 C 1.53003 * 109.46919 * 85.24670 * 7 6 5 10 10 C 1.50697 * 109.47067 * 205.24327 * 7 6 5 11 11 O 1.21280 * 120.00028 * 346.59398 * 10 7 6 12 12 N 1.34775 * 120.00041 * 166.58828 * 10 7 6 13 13 C 1.46501 * 120.00240 * 184.65282 * 12 10 7 14 14 C 1.46498 * 119.99664 * 4.66271 * 12 10 7 15 15 H 1.08993 * 109.47623 * 357.84601 * 14 12 10 16 16 C 1.53002 * 109.47367 * 117.84922 * 14 12 10 17 17 C 1.50700 * 109.46928 * 237.84603 * 14 12 10 18 18 H 1.08002 * 120.00032 * 0.02562 * 17 14 12 19 19 C 1.37879 * 120.00256 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99835 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00191 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47131 * 59.99578 * 21 19 17 23 23 H 1.48496 * 109.47283 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46965 * 300.00011 * 21 19 17 25 25 C 1.38738 * 119.89157 * 0.28128 * 5 4 3 26 26 C 1.38148 * 119.93646 * 359.42076 * 25 5 4 27 27 H 1.09000 * 109.47255 * 90.00115 * 1 2 3 28 28 H 1.09001 * 109.47558 * 210.00309 * 1 2 3 29 29 H 1.09003 * 109.47354 * 330.00388 * 1 2 3 30 30 H 1.07994 * 119.97044 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02472 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46667 * 185.17038 * 9 7 6 33 33 H 1.09002 * 109.46811 * 305.17029 * 9 7 6 34 34 H 1.08994 * 109.47359 * 65.17011 * 9 7 6 35 35 H 1.08996 * 109.47186 * 274.92392 * 13 12 10 36 36 H 1.08998 * 109.46786 * 34.92771 * 13 12 10 37 37 H 1.09002 * 109.47044 * 154.92826 * 13 12 10 38 38 H 1.09000 * 109.46911 * 59.99634 * 16 14 12 39 39 H 1.08992 * 109.47213 * 299.99511 * 16 14 12 40 40 H 1.09005 * 109.47340 * 179.97438 * 16 14 12 41 41 H 0.97008 * 119.99908 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.02964 * 179.72147 * 25 5 4 43 43 H 1.08001 * 119.97147 * 180.27216 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 -0.0005 5 6 4.2734 -0.0001 -0.0005 6 8 5.6324 -0.0001 -0.0005 7 6 6.2812 1.2674 -0.1207 8 1 5.6938 1.9160 -0.7707 9 6 6.4062 1.9095 1.2624 10 6 7.6543 1.0749 -0.7111 11 8 8.1364 -0.0361 -0.7753 12 7 8.3464 2.1373 -1.1679 13 6 9.6363 1.9400 -1.8339 14 6 7.8090 3.4896 -0.9981 15 1 6.8313 3.4346 -0.5195 16 6 8.7594 4.3101 -0.1238 17 6 7.6719 4.1485 -2.3465 18 1 7.9562 3.6134 -3.2405 19 6 7.1835 5.4346 -2.4389 20 7 6.8367 6.0861 -1.3503 21 14 7.0129 6.2511 -4.1103 22 1 6.0897 5.4549 -4.9582 23 1 6.4682 7.6218 -3.9383 24 1 8.3446 6.3253 -4.7632 25 6 3.5786 -1.2009 -0.0059 26 6 2.1971 -1.1981 0.0009 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6559 2.1325 -0.0004 31 1 4.1173 2.1368 -0.0010 32 1 6.8170 2.9140 1.1608 33 1 5.4220 1.9647 1.7276 34 1 7.0687 1.3072 1.8841 35 1 10.4264 1.8806 -1.0854 36 1 9.6103 1.0145 -2.4090 37 1 9.8318 2.7781 -2.5028 38 1 9.7371 4.3651 -0.6025 39 1 8.8585 3.8336 0.8514 40 1 8.3597 5.3164 0.0021 41 1 6.4935 6.9910 -1.4153 42 1 4.1171 -2.1369 -0.0105 43 1 1.6556 -2.1326 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = -49.415857 kcal Electronic energy + Delta-G solvation = -23832.384466 eV Core-core repulsion = 20457.085673 eV Total energy + Delta-G solvation = -3375.298793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36814 -39.06273 -37.32841 -35.65392 -32.74962 -32.39182 -31.33734 -30.63744 -29.26736 -26.57874 -26.35602 -25.40596 -23.72961 -22.67621 -21.50955 -20.92831 -18.58000 -18.06302 -16.78813 -16.35312 -15.65038 -15.34104 -15.22826 -14.91836 -14.41971 -14.25761 -14.14783 -13.62519 -13.45779 -13.37926 -13.05322 -12.64889 -12.45236 -12.23760 -11.96164 -11.87538 -11.67492 -11.44903 -11.39652 -11.33831 -11.11859 -10.99917 -10.81586 -10.65120 -10.53879 -10.34864 -10.25758 -9.44875 -9.03621 -8.87901 -8.61990 -7.87706 -7.75045 -6.27318 -4.36191 1.45309 1.53416 3.03341 3.18362 3.23828 3.25889 3.27910 3.86399 4.10716 4.27269 4.88410 4.92473 5.01230 5.04322 5.07017 5.25204 5.31601 5.34205 5.45771 5.56208 5.59167 5.80582 5.86423 5.90135 6.00025 6.08887 6.14565 6.17083 6.30177 6.41468 6.42820 6.51326 6.53072 6.64801 6.69062 6.80231 6.90439 7.08852 7.26131 7.54540 7.66103 7.74081 8.00516 8.30783 8.64488 8.87328 9.32512 10.77310 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.004982 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.170258 B = 5618.771667 C = 6831.893355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.078 4.078 4 C -0.204 4.204 5 C 0.133 3.867 6 O -0.289 6.289 7 C 0.070 3.930 8 H 0.104 0.896 9 C -0.178 4.178 10 C 0.515 3.485 11 O -0.553 6.553 12 N -0.587 5.587 13 C 0.097 3.903 14 C 0.247 3.753 15 H 0.055 0.945 16 C -0.152 4.152 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.151 4.151 26 C -0.084 4.084 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.014 0.986 40 H 0.096 0.904 41 H 0.266 0.734 42 H 0.129 0.871 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -6.672 4.002 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.096 4.096 4 C -0.223 4.223 5 C 0.087 3.913 6 O -0.202 6.202 7 C 0.010 3.990 8 H 0.122 0.878 9 C -0.235 4.235 10 C 0.301 3.699 11 O -0.432 6.432 12 N -0.319 5.319 13 C -0.046 4.046 14 C 0.146 3.854 15 H 0.073 0.927 16 C -0.210 4.210 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.170 4.170 26 C -0.102 4.102 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.619 -7.198 4.039 11.233 hybrid contribution -0.077 0.929 -0.938 1.322 sum -7.696 -6.269 3.101 10.399 Atomic orbital electron populations 1.20682 0.91369 1.02310 1.01926 1.19779 0.95988 0.93127 1.04628 1.20833 0.93296 0.97623 0.97839 1.21453 0.95450 0.97707 1.07680 1.19123 0.82657 0.94169 0.95394 1.86160 1.15669 1.31182 1.87174 1.22252 0.93330 0.84364 0.99017 0.87826 1.22440 1.03516 1.02618 0.94935 1.19891 0.86235 0.84796 0.78949 1.90628 1.70430 1.24655 1.57508 1.48154 1.20328 1.07986 1.55406 1.21428 0.84277 1.02009 0.96868 1.19232 0.93525 0.76092 0.96526 0.92707 1.22143 0.99337 1.03528 0.96011 1.21307 1.44398 0.99298 0.92284 0.91855 1.24873 0.94647 0.96838 0.97058 1.69832 1.42742 1.12532 1.27386 0.86532 0.78682 0.78424 0.83728 1.20123 1.21070 1.20059 1.20412 0.93668 0.96346 1.06559 1.20770 0.92891 0.97560 0.98985 0.91654 0.91958 0.91862 0.85858 0.84688 0.88714 0.91184 0.91438 0.93979 0.92427 0.89990 0.94581 0.96676 0.88563 0.92377 0.85290 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.13 -1.65 5.88 -104.60 -0.62 -2.26 16 3 C -0.08 -1.04 9.69 -39.60 -0.38 -1.43 16 4 C -0.20 -3.16 8.23 -39.43 -0.32 -3.49 16 5 C 0.13 2.22 6.58 -39.22 -0.26 1.96 16 6 O -0.29 -5.56 9.37 -38.97 -0.37 -5.92 16 7 C 0.07 1.33 1.78 -27.88 -0.05 1.28 16 8 H 0.10 2.00 5.37 -51.93 -0.28 1.72 16 9 C -0.18 -2.95 8.76 37.16 0.33 -2.63 16 10 C 0.52 11.17 7.00 -10.99 -0.08 11.09 16 11 O -0.55 -13.32 16.27 -13.99 -0.23 -13.55 16 12 N -0.59 -12.48 2.75 -175.27 -0.48 -12.96 16 13 C 0.10 1.86 9.36 59.85 0.56 2.42 16 14 C 0.25 5.51 1.83 -69.08 -0.13 5.38 16 15 H 0.06 1.24 4.31 -51.93 -0.22 1.02 16 16 C -0.15 -3.26 8.70 37.16 0.32 -2.93 16 17 C -0.53 -13.16 7.93 -34.44 -0.27 -13.44 16 18 H 0.06 1.58 7.27 -52.49 -0.38 1.20 16 19 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -22.43 11.32 55.43 0.63 -21.80 16 21 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.15 -2.20 9.99 -39.43 -0.39 -2.60 16 26 C -0.08 -1.04 9.69 -39.60 -0.38 -1.42 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.14 2.11 5.51 -52.49 -0.29 1.82 16 32 H 0.09 1.63 5.31 -51.93 -0.28 1.36 16 33 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.09 7.65 -51.93 -0.40 0.69 16 37 H 0.08 1.55 6.94 -51.93 -0.36 1.19 16 38 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 39 H 0.01 0.28 7.77 -51.93 -0.40 -0.12 16 40 H 0.10 2.25 6.07 -51.93 -0.32 1.93 16 41 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 42 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -28.29 345.32 -7.88 -36.17 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.20 Total: 5.25 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.41 Total: -7.05 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.14 Total: -34.76 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.59 Total: -19.47 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.29 -7.88 -36.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.249 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds