Wall clock time and date at job start Tue Mar 31 2020 07:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38268 * 119.94722 * 2 1 4 4 C 1.38146 * 120.05592 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94455 * 359.97438 * 4 3 2 6 6 O 1.35899 * 120.05599 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99919 * 354.58351 * 6 5 4 8 8 H 1.09000 * 109.46887 * 325.24548 * 7 6 5 9 9 C 1.53003 * 109.46919 * 85.24670 * 7 6 5 10 10 C 1.50697 * 109.47067 * 205.24327 * 7 6 5 11 11 O 1.21280 * 120.00028 * 346.59398 * 10 7 6 12 12 N 1.34775 * 120.00041 * 166.58828 * 10 7 6 13 13 C 1.46501 * 120.00240 * 184.65282 * 12 10 7 14 14 C 1.46498 * 119.99664 * 4.66271 * 12 10 7 15 15 H 1.08993 * 109.47623 * 357.84601 * 14 12 10 16 16 C 1.53002 * 109.47367 * 117.84922 * 14 12 10 17 17 C 1.50700 * 109.46928 * 237.84603 * 14 12 10 18 18 H 1.08002 * 120.00032 * 0.02562 * 17 14 12 19 19 C 1.37879 * 120.00256 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99835 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00191 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47131 * 59.99578 * 21 19 17 23 23 H 1.48496 * 109.47283 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46965 * 300.00011 * 21 19 17 25 25 C 1.38738 * 119.89157 * 0.28128 * 5 4 3 26 26 C 1.38148 * 119.93646 * 359.42076 * 25 5 4 27 27 H 1.09000 * 109.47255 * 90.00115 * 1 2 3 28 28 H 1.09001 * 109.47558 * 210.00309 * 1 2 3 29 29 H 1.09003 * 109.47354 * 330.00388 * 1 2 3 30 30 H 1.07994 * 119.97044 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02472 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46667 * 185.17038 * 9 7 6 33 33 H 1.09002 * 109.46811 * 305.17029 * 9 7 6 34 34 H 1.08994 * 109.47359 * 65.17011 * 9 7 6 35 35 H 1.08996 * 109.47186 * 274.92392 * 13 12 10 36 36 H 1.08998 * 109.46786 * 34.92771 * 13 12 10 37 37 H 1.09002 * 109.47044 * 154.92826 * 13 12 10 38 38 H 1.09000 * 109.46911 * 59.99634 * 16 14 12 39 39 H 1.08992 * 109.47213 * 299.99511 * 16 14 12 40 40 H 1.09005 * 109.47340 * 179.97438 * 16 14 12 41 41 H 0.97008 * 119.99908 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.02964 * 179.72147 * 25 5 4 43 43 H 1.08001 * 119.97147 * 180.27216 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 -0.0005 5 6 4.2734 -0.0001 -0.0005 6 8 5.6324 -0.0001 -0.0005 7 6 6.2812 1.2674 -0.1207 8 1 5.6938 1.9160 -0.7707 9 6 6.4062 1.9095 1.2624 10 6 7.6543 1.0749 -0.7111 11 8 8.1364 -0.0361 -0.7753 12 7 8.3464 2.1373 -1.1679 13 6 9.6363 1.9400 -1.8339 14 6 7.8090 3.4896 -0.9981 15 1 6.8313 3.4346 -0.5195 16 6 8.7594 4.3101 -0.1238 17 6 7.6719 4.1485 -2.3465 18 1 7.9562 3.6134 -3.2405 19 6 7.1835 5.4346 -2.4389 20 7 6.8367 6.0861 -1.3503 21 14 7.0129 6.2511 -4.1103 22 1 6.0897 5.4549 -4.9582 23 1 6.4682 7.6218 -3.9383 24 1 8.3446 6.3253 -4.7632 25 6 3.5786 -1.2009 -0.0059 26 6 2.1971 -1.1981 0.0009 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6559 2.1325 -0.0004 31 1 4.1173 2.1368 -0.0010 32 1 6.8170 2.9140 1.1608 33 1 5.4220 1.9647 1.7276 34 1 7.0687 1.3072 1.8841 35 1 10.4264 1.8806 -1.0854 36 1 9.6103 1.0145 -2.4090 37 1 9.8318 2.7781 -2.5028 38 1 9.7371 4.3651 -0.6025 39 1 8.8585 3.8336 0.8514 40 1 8.3597 5.3164 0.0021 41 1 6.4935 6.9910 -1.4153 42 1 4.1171 -2.1369 -0.0105 43 1 1.6556 -2.1326 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:21 Heat of formation + Delta-G solvation = -62.739625 kcal Electronic energy + Delta-G solvation = -23832.962228 eV Core-core repulsion = 20457.085673 eV Total energy + Delta-G solvation = -3375.876555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76549 -40.50962 -38.59105 -37.43665 -34.60905 -33.62432 -32.46650 -31.76851 -31.04968 -28.13430 -27.36615 -27.26414 -25.10508 -23.88903 -23.13973 -22.10592 -20.11730 -19.45584 -18.56392 -17.98779 -17.17031 -16.79627 -16.61214 -16.29646 -15.91949 -15.81091 -15.28821 -14.94381 -14.77044 -14.49051 -14.39425 -13.97940 -13.96431 -13.69182 -13.39502 -13.18355 -13.04149 -12.87815 -12.86767 -12.76216 -12.63389 -12.53432 -12.39357 -12.18218 -12.04961 -11.85139 -11.68634 -11.26117 -10.74880 -10.50228 -9.95922 -9.49623 -9.00874 -8.16734 -6.30906 0.38051 0.43799 1.43459 1.44102 1.47897 1.53358 1.70918 2.39567 2.64569 2.78715 3.12345 3.42382 3.72976 3.86945 3.90383 3.97589 4.10558 4.33711 4.45469 4.46290 4.52285 4.56243 4.62748 4.68538 4.71181 4.85435 4.92283 4.92398 4.94328 4.99466 5.03726 5.10176 5.19572 5.35185 5.38690 5.42649 5.51158 5.67351 5.68888 5.87886 5.92313 6.16484 6.37833 6.54857 6.75922 7.14332 7.40660 8.86388 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.004982 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.170258 B = 5618.771667 C = 6831.893355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.129 4.129 3 C -0.087 4.087 4 C -0.216 4.216 5 C 0.098 3.902 6 O -0.311 6.311 7 C 0.077 3.923 8 H 0.096 0.904 9 C -0.166 4.166 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.589 5.589 13 C 0.095 3.905 14 C 0.251 3.749 15 H 0.051 0.949 16 C -0.141 4.141 17 C -0.549 4.549 18 H 0.054 0.946 19 C 0.034 3.966 20 N -0.903 5.903 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.273 1.273 25 C -0.161 4.161 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.268 0.732 42 H 0.133 0.867 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -6.861 4.093 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.235 4.235 5 C 0.053 3.947 6 O -0.225 6.225 7 C 0.018 3.982 8 H 0.113 0.887 9 C -0.224 4.224 10 C 0.296 3.704 11 O -0.464 6.464 12 N -0.320 5.320 13 C -0.048 4.048 14 C 0.150 3.850 15 H 0.069 0.931 16 C -0.200 4.200 17 C -0.587 4.587 18 H 0.072 0.928 19 C -0.168 4.168 20 N -0.541 5.541 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.179 4.179 26 C -0.098 4.098 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.364 -7.377 4.131 12.616 hybrid contribution 0.377 0.936 -0.976 1.403 sum -8.988 -6.441 3.155 11.499 Atomic orbital electron populations 1.20760 0.88655 1.03779 1.02975 1.20234 0.97931 0.92461 1.02253 1.21133 0.92536 0.99217 0.97561 1.21473 0.96502 0.96924 1.08579 1.19436 0.81706 0.95531 0.97985 1.86108 1.17334 1.30971 1.88065 1.22100 0.91641 0.84652 0.99800 0.88679 1.22345 1.04511 1.01783 0.93738 1.20380 0.87136 0.84326 0.78565 1.90596 1.71358 1.25583 1.58830 1.48220 1.20921 1.07610 1.55211 1.21526 0.83937 1.01987 0.97306 1.19117 0.93701 0.76429 0.95757 0.93136 1.21984 0.98867 1.02407 0.96698 1.21494 1.44661 0.99682 0.92905 0.92799 1.25434 0.94469 0.97252 0.99624 1.69913 1.42976 1.12693 1.28553 0.85721 0.78482 0.77592 0.80512 1.20453 1.20639 1.19791 1.20676 0.94840 0.95827 1.06601 1.21170 0.91967 0.99189 0.97454 0.90652 0.90133 0.90881 0.84061 0.85683 0.89378 0.89500 0.91264 0.92369 0.92466 0.89886 0.94476 0.95031 0.90291 0.92298 0.84894 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.23 0.71 -0.79 16 2 C -0.13 -2.80 5.88 -19.85 -0.12 -2.92 16 3 C -0.09 -2.20 9.69 22.25 0.22 -1.98 16 4 C -0.22 -6.71 8.23 22.36 0.18 -6.53 16 5 C 0.10 3.32 6.58 22.51 0.15 3.47 16 6 O -0.31 -12.28 9.37 -73.73 -0.69 -12.97 16 7 C 0.08 3.02 1.78 29.85 0.05 3.07 16 8 H 0.10 3.82 5.37 -2.39 -0.01 3.80 16 9 C -0.17 -5.57 8.76 71.98 0.63 -4.94 16 10 C 0.51 22.45 7.00 87.66 0.61 23.06 16 11 O -0.58 -28.58 16.27 15.66 0.25 -28.32 16 12 N -0.59 -25.21 2.75 -826.81 -2.28 -27.49 16 13 C 0.09 3.63 9.36 127.77 1.20 4.82 16 14 C 0.25 11.25 1.83 44.25 0.08 11.33 16 15 H 0.05 2.33 4.31 -2.39 -0.01 2.32 16 16 C -0.14 -6.01 8.70 71.98 0.63 -5.38 16 17 C -0.55 -27.12 7.93 25.60 0.20 -26.91 16 18 H 0.05 2.71 7.27 -2.91 -0.02 2.69 16 19 C 0.03 1.66 5.30 84.66 0.45 2.11 16 20 N -0.90 -45.47 11.32 21.45 0.24 -45.23 16 21 Si 0.95 40.02 29.54 68.60 2.03 42.04 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 C -0.16 -4.58 9.99 22.37 0.22 -4.36 16 26 C -0.08 -1.78 9.69 22.25 0.22 -1.57 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.89 8.08 -2.39 -0.02 0.88 16 29 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.13 4.02 5.51 -2.91 -0.02 4.01 16 32 H 0.09 3.05 5.31 -2.39 -0.01 3.04 16 33 H 0.09 2.57 7.02 -2.39 -0.02 2.55 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.17 7.65 -2.39 -0.02 2.15 16 37 H 0.08 3.13 6.94 -2.39 -0.02 3.11 16 38 H 0.04 1.53 7.72 -2.39 -0.02 1.51 16 39 H 0.03 1.20 7.77 -2.39 -0.02 1.18 16 40 H 0.08 3.68 6.07 -2.38 -0.01 3.66 16 41 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 42 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -59.98 345.32 6.00 -53.98 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.01 Total: 25.50 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.44 Total: -7.52 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -2.03 Total: -72.72 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.44 Total: -41.29 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -59.98 6.00 -53.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.756 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds