Wall clock time and date at job start Tue Mar 31 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38260 * 119.94091 * 2 1 4 4 C 1.38148 * 120.05346 * 179.72685 * 3 2 1 5 5 C 1.38732 * 119.94262 * 0.27175 * 4 3 2 6 6 O 1.35898 * 120.05537 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99855 * 357.60684 * 6 5 4 8 8 H 1.08995 * 109.47190 * 36.35235 * 7 6 5 9 9 C 1.52994 * 109.47371 * 276.34438 * 7 6 5 10 10 C 1.50704 * 109.46652 * 156.34456 * 7 6 5 11 11 O 1.21279 * 120.00530 * 14.10898 * 10 7 6 12 12 N 1.34779 * 119.99942 * 194.10011 * 10 7 6 13 13 C 1.46507 * 119.99913 * 5.30155 * 12 10 7 14 14 C 1.46497 * 120.00359 * 185.29963 * 12 10 7 15 15 H 1.09001 * 109.46840 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47277 * 120.00392 * 14 12 10 17 17 C 1.50703 * 109.47265 * 240.00325 * 14 12 10 18 18 H 1.08002 * 119.99707 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00157 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00077 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47276 * 89.99945 * 21 19 17 23 23 H 1.48505 * 109.47157 * 210.00031 * 21 19 17 24 24 H 1.48498 * 109.47213 * 330.00061 * 21 19 17 25 25 C 1.38733 * 119.89104 * 0.02562 * 5 4 3 26 26 C 1.38143 * 119.94032 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.46842 * 90.00059 * 1 2 3 28 28 H 1.09003 * 109.46882 * 210.00435 * 1 2 3 29 29 H 1.08994 * 109.46867 * 330.00091 * 1 2 3 30 30 H 1.08003 * 119.97702 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.02931 * 180.29403 * 4 3 2 32 32 H 1.09005 * 109.47330 * 305.22396 * 9 7 6 33 33 H 1.09000 * 109.46856 * 65.22656 * 9 7 6 34 34 H 1.08998 * 109.47415 * 185.22223 * 9 7 6 35 35 H 1.09005 * 109.47107 * 93.82620 * 13 12 10 36 36 H 1.08998 * 109.47131 * 213.82805 * 13 12 10 37 37 H 1.08997 * 109.46923 * 333.82741 * 13 12 10 38 38 H 1.09004 * 109.47283 * 180.02562 * 16 14 12 39 39 H 1.09001 * 109.46494 * 299.99789 * 16 14 12 40 40 H 1.08994 * 109.47321 * 59.99692 * 16 14 12 41 41 H 0.96992 * 120.00297 * 180.02562 * 20 19 17 42 42 H 1.07993 * 120.02985 * 179.97438 * 25 5 4 43 43 H 1.08011 * 119.97108 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2735 0.0000 0.0057 6 8 5.6324 0.0000 0.0108 7 6 6.2813 1.2723 -0.0372 8 1 5.7067 1.9953 0.5416 9 6 6.3763 1.7419 -1.4902 10 6 7.6668 1.1516 0.5433 11 8 8.1572 0.0566 0.7198 12 7 8.3611 2.2608 0.8662 13 6 7.7275 3.5777 0.7625 14 6 9.7493 2.1497 1.3209 15 1 10.0447 1.1005 1.3331 16 6 10.6616 2.9249 0.3683 17 6 9.8704 2.7223 2.7097 18 1 9.0004 3.1288 3.2039 19 6 11.0918 2.7273 3.3492 20 7 12.1512 2.2319 2.7476 21 14 11.2418 3.4364 5.0708 22 1 11.0022 2.3646 6.0703 23 1 12.6053 3.9936 5.2597 24 1 10.2370 4.5149 5.2512 25 6 3.5787 -1.2008 -0.0005 26 6 2.1973 -1.1981 -0.0062 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6558 2.1326 -0.0004 31 1 4.1173 2.1369 0.0105 32 1 6.8701 0.9758 -2.0882 33 1 5.3742 1.9182 -1.8812 34 1 6.9521 2.6662 -1.5365 35 1 7.3043 3.8544 1.7283 36 1 8.4720 4.3169 0.4669 37 1 6.9347 3.5416 0.0154 38 1 11.6946 2.8418 0.7064 39 1 10.5740 2.5106 -0.6361 40 1 10.3663 3.9740 0.3557 41 1 13.0104 2.2350 3.1976 42 1 4.1173 -2.1368 -0.0009 43 1 1.6559 -2.1327 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:25 Heat of formation + Delta-G solvation = -45.069589 kcal Electronic energy + Delta-G solvation = -23367.345150 eV Core-core repulsion = 19992.234825 eV Total energy + Delta-G solvation = -3375.110325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52243 -39.09988 -37.49168 -35.34686 -33.25923 -32.32143 -31.47273 -30.84721 -29.11407 -26.61154 -26.25418 -25.24822 -24.36465 -23.01489 -21.61450 -20.60596 -18.53029 -18.31475 -16.71841 -16.22838 -15.93567 -15.52970 -15.41511 -15.04917 -14.59815 -14.31758 -14.14864 -13.76575 -13.59064 -13.28551 -13.12071 -12.69990 -12.62239 -12.49123 -12.25328 -11.97716 -11.63735 -11.61486 -11.58828 -11.42482 -11.07201 -10.93231 -10.85654 -10.78121 -10.61120 -10.26955 -10.18806 -9.21729 -9.09013 -8.94157 -8.44673 -8.04957 -7.66807 -6.09177 -4.17246 1.25657 1.35654 2.93156 3.23845 3.26790 3.33302 3.35162 3.66974 4.03062 4.38554 4.67302 4.69567 4.76791 4.87774 4.97073 5.04490 5.12900 5.22352 5.25244 5.37709 5.42010 5.49408 5.58506 5.63080 5.64667 5.77054 5.95652 5.96649 6.05836 6.22370 6.24142 6.31206 6.50571 6.69354 6.72603 6.77224 7.00039 7.31181 7.43298 7.51670 7.68135 7.98010 8.15354 8.43334 8.79363 8.96072 9.49193 10.96308 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.003409 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.198628 B = 8211.565479 C = 8498.233475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.079 4.079 4 C -0.211 4.211 5 C 0.133 3.867 6 O -0.283 6.283 7 C 0.065 3.935 8 H 0.092 0.908 9 C -0.174 4.174 10 C 0.509 3.491 11 O -0.528 6.528 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.259 3.741 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.149 4.149 26 C -0.080 4.080 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.012 0.988 40 H 0.031 0.969 41 H 0.264 0.736 42 H 0.132 0.868 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 0.957 -8.155 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.097 4.097 4 C -0.229 4.229 5 C 0.087 3.913 6 O -0.195 6.195 7 C 0.005 3.995 8 H 0.109 0.891 9 C -0.232 4.232 10 C 0.294 3.706 11 O -0.404 6.404 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.160 3.840 15 H 0.082 0.918 16 C -0.206 4.206 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.168 4.168 26 C -0.098 4.098 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.830 0.191 -8.014 20.466 hybrid contribution 0.108 0.790 0.996 1.276 sum -18.722 0.981 -7.018 20.018 Atomic orbital electron populations 1.20690 0.91264 1.02479 1.01918 1.19793 0.96069 0.93117 1.04536 1.20791 0.93189 0.97600 0.98127 1.21298 0.95342 0.97340 1.08932 1.19152 0.82740 0.94236 0.95138 1.86256 1.15555 1.30186 1.87541 1.22363 0.93766 0.85134 0.98278 0.89068 1.22330 1.03355 1.03022 0.94454 1.19806 0.85945 0.85388 0.79503 1.90689 1.69867 1.26229 1.53602 1.48162 1.15523 1.04510 1.63941 1.21752 0.97897 0.86434 1.00614 1.18981 0.73652 0.98845 0.92532 0.91823 1.22107 1.04387 0.98108 0.95986 1.21297 0.94841 1.40648 0.99673 0.92247 1.24890 0.95593 0.95181 0.98104 1.69871 0.99959 1.45244 1.37533 0.86478 0.77308 0.79218 0.84286 1.20568 1.21100 1.19920 1.20461 0.93701 0.96542 1.06080 1.20820 0.92901 0.97695 0.98422 0.91640 0.91808 0.91855 0.85956 0.85238 0.90650 0.91225 0.89841 0.92871 0.90582 0.92649 0.88650 0.96893 0.94988 0.92634 0.85041 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.13 -1.37 5.88 -104.60 -0.62 -1.99 16 3 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 4 C -0.21 -2.58 8.37 -39.43 -0.33 -2.91 16 5 C 0.13 1.95 6.58 -39.22 -0.26 1.69 16 6 O -0.28 -4.97 9.38 -38.92 -0.37 -5.33 16 7 C 0.06 1.04 1.80 -27.88 -0.05 0.99 16 8 H 0.09 1.27 5.12 -51.93 -0.27 1.00 16 9 C -0.17 -2.23 8.86 37.15 0.33 -1.90 16 10 C 0.51 10.89 6.97 -10.98 -0.08 10.81 16 11 O -0.53 -13.79 15.90 -13.94 -0.22 -14.01 16 12 N -0.59 -12.45 2.75 -175.25 -0.48 -12.94 16 13 C 0.08 1.23 9.14 59.85 0.55 1.78 16 14 C 0.26 6.61 2.63 -69.08 -0.18 6.43 16 15 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 16 C -0.15 -3.46 8.94 37.16 0.33 -3.12 16 17 C -0.53 -14.23 8.37 -34.44 -0.29 -14.52 16 18 H 0.06 1.58 7.54 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.11 11.32 55.43 0.63 -24.49 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 26 C -0.08 -0.86 9.69 -39.61 -0.38 -1.25 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.13 1.40 5.61 -52.49 -0.29 1.10 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 34 H 0.08 0.97 6.29 -51.93 -0.33 0.65 16 35 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 36 H 0.08 1.21 6.44 -51.93 -0.33 0.87 16 37 H 0.05 0.67 4.59 -51.93 -0.24 0.43 16 38 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -32.51 346.10 -7.92 -40.43 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.18 Total: 1.35 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.49 Total: -6.29 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.15 Total: -37.42 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.59 Total: -19.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.51 -7.92 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.640 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds