Wall clock time and date at job start Tue Mar 31 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38260 * 119.94091 * 2 1 4 4 C 1.38148 * 120.05346 * 179.72685 * 3 2 1 5 5 C 1.38732 * 119.94262 * 0.27175 * 4 3 2 6 6 O 1.35898 * 120.05537 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99855 * 357.60684 * 6 5 4 8 8 H 1.08995 * 109.47190 * 36.35235 * 7 6 5 9 9 C 1.52994 * 109.47371 * 276.34438 * 7 6 5 10 10 C 1.50704 * 109.46652 * 156.34456 * 7 6 5 11 11 O 1.21279 * 120.00530 * 14.10898 * 10 7 6 12 12 N 1.34779 * 119.99942 * 194.10011 * 10 7 6 13 13 C 1.46507 * 119.99913 * 5.30155 * 12 10 7 14 14 C 1.46497 * 120.00359 * 185.29963 * 12 10 7 15 15 H 1.09001 * 109.46840 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47277 * 120.00392 * 14 12 10 17 17 C 1.50703 * 109.47265 * 240.00325 * 14 12 10 18 18 H 1.08002 * 119.99707 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00157 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00077 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47276 * 89.99945 * 21 19 17 23 23 H 1.48505 * 109.47157 * 210.00031 * 21 19 17 24 24 H 1.48498 * 109.47213 * 330.00061 * 21 19 17 25 25 C 1.38733 * 119.89104 * 0.02562 * 5 4 3 26 26 C 1.38143 * 119.94032 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.46842 * 90.00059 * 1 2 3 28 28 H 1.09003 * 109.46882 * 210.00435 * 1 2 3 29 29 H 1.08994 * 109.46867 * 330.00091 * 1 2 3 30 30 H 1.08003 * 119.97702 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.02931 * 180.29403 * 4 3 2 32 32 H 1.09005 * 109.47330 * 305.22396 * 9 7 6 33 33 H 1.09000 * 109.46856 * 65.22656 * 9 7 6 34 34 H 1.08998 * 109.47415 * 185.22223 * 9 7 6 35 35 H 1.09005 * 109.47107 * 93.82620 * 13 12 10 36 36 H 1.08998 * 109.47131 * 213.82805 * 13 12 10 37 37 H 1.08997 * 109.46923 * 333.82741 * 13 12 10 38 38 H 1.09004 * 109.47283 * 180.02562 * 16 14 12 39 39 H 1.09001 * 109.46494 * 299.99789 * 16 14 12 40 40 H 1.08994 * 109.47321 * 59.99692 * 16 14 12 41 41 H 0.96992 * 120.00297 * 180.02562 * 20 19 17 42 42 H 1.07993 * 120.02985 * 179.97438 * 25 5 4 43 43 H 1.08011 * 119.97108 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2735 0.0000 0.0057 6 8 5.6324 0.0000 0.0108 7 6 6.2813 1.2723 -0.0372 8 1 5.7067 1.9953 0.5416 9 6 6.3763 1.7419 -1.4902 10 6 7.6668 1.1516 0.5433 11 8 8.1572 0.0566 0.7198 12 7 8.3611 2.2608 0.8662 13 6 7.7275 3.5777 0.7625 14 6 9.7493 2.1497 1.3209 15 1 10.0447 1.1005 1.3331 16 6 10.6616 2.9249 0.3683 17 6 9.8704 2.7223 2.7097 18 1 9.0004 3.1288 3.2039 19 6 11.0918 2.7273 3.3492 20 7 12.1512 2.2319 2.7476 21 14 11.2418 3.4364 5.0708 22 1 11.0022 2.3646 6.0703 23 1 12.6053 3.9936 5.2597 24 1 10.2370 4.5149 5.2512 25 6 3.5787 -1.2008 -0.0005 26 6 2.1973 -1.1981 -0.0062 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6558 2.1326 -0.0004 31 1 4.1173 2.1369 0.0105 32 1 6.8701 0.9758 -2.0882 33 1 5.3742 1.9182 -1.8812 34 1 6.9521 2.6662 -1.5365 35 1 7.3043 3.8544 1.7283 36 1 8.4720 4.3169 0.4669 37 1 6.9347 3.5416 0.0154 38 1 11.6946 2.8418 0.7064 39 1 10.5740 2.5106 -0.6361 40 1 10.3663 3.9740 0.3557 41 1 13.0104 2.2350 3.1976 42 1 4.1173 -2.1368 -0.0009 43 1 1.6559 -2.1327 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:25 Heat of formation + Delta-G solvation = -63.856679 kcal Electronic energy + Delta-G solvation = -23368.159819 eV Core-core repulsion = 19992.234825 eV Total energy + Delta-G solvation = -3375.924994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72974 -40.47880 -38.61574 -37.16835 -35.05000 -33.52258 -32.49710 -31.85935 -30.81803 -27.80122 -27.33457 -27.28778 -25.60193 -24.05344 -22.89261 -21.87607 -20.10435 -19.44702 -18.54712 -17.84047 -17.47837 -16.73984 -16.68814 -16.31706 -15.94601 -15.76188 -15.26136 -14.76444 -14.61209 -14.48237 -14.40528 -14.18527 -13.98775 -13.56810 -13.42028 -13.36052 -12.98193 -12.91496 -12.78365 -12.75377 -12.66529 -12.54440 -12.36905 -12.19778 -12.11420 -11.87246 -11.61705 -11.21158 -10.67659 -10.50033 -9.94842 -9.42482 -8.98930 -8.16808 -6.33646 0.39458 0.45946 1.39760 1.41656 1.50370 1.55930 1.73617 2.38407 2.65887 2.80054 3.11381 3.42724 3.63300 3.85748 3.91117 3.99504 4.12411 4.29837 4.34922 4.47707 4.52045 4.58119 4.65265 4.72727 4.76579 4.85561 4.87641 4.93509 4.96139 5.02158 5.11847 5.13028 5.20284 5.39705 5.41489 5.43100 5.56395 5.63056 5.70341 5.88750 6.00447 6.12945 6.41549 6.70384 6.74057 7.22542 7.40392 8.87784 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.003409 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.198628 B = 8211.565479 C = 8498.233475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.081 4.081 4 C -0.212 4.212 5 C 0.099 3.901 6 O -0.320 6.320 7 C 0.077 3.923 8 H 0.119 0.881 9 C -0.167 4.167 10 C 0.496 3.504 11 O -0.592 6.592 12 N -0.591 5.591 13 C 0.070 3.930 14 C 0.262 3.738 15 H 0.005 0.995 16 C -0.132 4.132 17 C -0.540 4.540 18 H 0.061 0.939 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.259 1.259 25 C -0.170 4.170 26 C -0.083 4.083 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.054 0.946 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 3.448 -8.371 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.230 4.230 5 C 0.054 3.946 6 O -0.233 6.233 7 C 0.017 3.983 8 H 0.136 0.864 9 C -0.224 4.224 10 C 0.284 3.716 11 O -0.473 6.473 12 N -0.323 5.323 13 C -0.072 4.072 14 C 0.160 3.840 15 H 0.023 0.977 16 C -0.191 4.191 17 C -0.578 4.578 18 H 0.079 0.921 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.790 3.210 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.183 1.183 25 C -0.189 4.189 26 C -0.100 4.100 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.174 2.728 -8.249 23.815 hybrid contribution 1.028 -0.060 1.052 1.472 sum -21.146 2.668 -7.197 22.496 Atomic orbital electron populations 1.20759 0.88842 1.03601 1.03040 1.20247 0.97856 0.92682 1.02453 1.21189 0.92626 0.99063 0.96972 1.21496 0.96222 0.96847 1.08483 1.19443 0.81571 0.95805 0.97783 1.86196 1.17568 1.30987 1.88592 1.22279 0.90249 0.85611 1.00129 0.86379 1.22333 1.05312 1.02914 0.91808 1.20870 0.87932 0.84338 0.78509 1.90647 1.71814 1.28650 1.56202 1.48140 1.14251 1.06726 1.63167 1.22084 0.99024 0.83601 1.02491 1.18588 0.76727 0.95560 0.93135 0.97720 1.21879 1.02271 0.99139 0.95800 1.21569 0.95027 1.40656 1.00595 0.92072 1.25746 0.95282 0.95489 1.01978 1.70018 1.00408 1.46100 1.39114 0.85448 0.77826 0.78563 0.79138 1.21090 1.20377 1.18328 1.20646 0.94951 0.96118 1.07169 1.21119 0.91908 0.99340 0.97682 0.90383 0.90925 0.90607 0.82979 0.83708 0.92363 0.88147 0.88191 0.92341 0.90100 0.88115 0.91343 0.95807 0.92745 0.92581 0.86019 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.13 -2.28 5.88 -19.85 -0.12 -2.39 16 3 C -0.08 -1.42 9.69 22.25 0.22 -1.20 16 4 C -0.21 -4.66 8.37 22.37 0.19 -4.48 16 5 C 0.10 2.85 6.58 22.51 0.15 2.99 16 6 O -0.32 -11.50 9.38 -73.76 -0.69 -12.19 16 7 C 0.08 2.41 1.80 29.85 0.05 2.47 16 8 H 0.12 2.99 5.12 -2.39 -0.01 2.98 16 9 C -0.17 -3.93 8.86 71.98 0.64 -3.30 16 10 C 0.50 21.85 6.97 87.66 0.61 22.46 16 11 O -0.59 -33.16 15.90 15.62 0.25 -32.91 16 12 N -0.59 -25.19 2.75 -826.77 -2.28 -27.47 16 13 C 0.07 2.07 9.14 127.77 1.17 3.24 16 14 C 0.26 13.81 2.63 44.25 0.12 13.92 16 15 H 0.00 0.31 6.91 -2.39 -0.02 0.29 16 16 C -0.13 -6.31 8.94 71.98 0.64 -5.66 16 17 C -0.54 -29.70 8.37 25.60 0.21 -29.49 16 18 H 0.06 3.26 7.54 -2.91 -0.02 3.23 16 19 C 0.01 0.81 5.30 84.65 0.45 1.26 16 20 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 21 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 25 C -0.17 -4.48 9.99 22.37 0.22 -4.26 16 26 C -0.08 -1.64 9.69 22.25 0.22 -1.42 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.59 5.61 -2.91 -0.02 2.57 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.10 1.78 7.30 -2.39 -0.02 1.76 16 34 H 0.10 2.00 6.29 -2.39 -0.02 1.98 16 35 H 0.06 1.70 8.02 -2.38 -0.02 1.68 16 36 H 0.08 2.34 6.44 -2.39 -0.02 2.33 16 37 H 0.10 2.05 4.59 -2.39 -0.01 2.04 16 38 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 2.29 6.68 -2.39 -0.02 2.27 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -76.37 346.10 6.04 -70.33 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.01 Total: 16.27 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.48 Total: -6.26 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.03 Total: -80.65 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.44 Total: -45.10 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -76.37 6.04 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds