Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38290 * 119.96678 * 2 1 4 4 C 1.38251 * 120.10960 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05193 * 0.02759 * 4 3 2 6 6 C 1.38703 * 119.94476 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.05309 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00312 * 354.55698 * 7 6 5 9 9 H 1.09007 * 109.46984 * 324.95895 * 8 7 6 10 10 C 1.52992 * 109.47338 * 84.95595 * 8 7 6 11 11 C 1.50700 * 109.47226 * 204.96141 * 8 7 6 12 12 O 1.21277 * 120.00087 * 359.97438 * 11 8 7 13 13 N 1.34777 * 119.99933 * 179.97438 * 11 8 7 14 14 C 1.46507 * 120.00113 * 0.02562 * 13 11 8 15 15 C 1.46499 * 120.00016 * 180.27316 * 13 11 8 16 16 H 1.09000 * 109.47004 * 359.72823 * 15 13 11 17 17 C 1.52995 * 109.46984 * 119.72923 * 15 13 11 18 18 C 1.50699 * 109.47114 * 239.72720 * 15 13 11 19 19 H 1.08001 * 120.00110 * 0.02562 * 18 15 13 20 20 C 1.37877 * 119.99872 * 179.97438 * 18 15 13 21 21 N 1.31516 * 120.00213 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00021 * 359.97438 * 20 18 15 23 23 H 1.48503 * 109.46878 * 90.00023 * 22 20 18 24 24 H 1.48499 * 109.47215 * 209.99841 * 22 20 18 25 25 H 1.48497 * 109.47051 * 330.00050 * 22 20 18 26 26 C 1.38120 * 119.97604 * 180.30391 * 2 1 3 27 27 H 1.09003 * 109.47572 * 89.99779 * 1 2 3 28 28 H 1.08998 * 109.46889 * 210.00067 * 1 2 3 29 29 H 1.08998 * 109.47173 * 329.99820 * 1 2 3 30 30 H 1.08002 * 119.94744 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.96949 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.02364 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47572 * 300.00192 * 10 8 7 34 34 H 1.09003 * 109.47310 * 60.00228 * 10 8 7 35 35 H 1.09005 * 109.47204 * 180.02562 * 10 8 7 36 36 H 1.08997 * 109.47112 * 89.99394 * 14 13 11 37 37 H 1.09000 * 109.47242 * 209.99850 * 14 13 11 38 38 H 1.09002 * 109.46521 * 330.00143 * 14 13 11 39 39 H 1.09002 * 109.47215 * 180.02562 * 17 15 13 40 40 H 1.09008 * 109.47240 * 299.99775 * 17 15 13 41 41 H 1.09001 * 109.47784 * 59.99834 * 17 15 13 42 42 H 0.96994 * 120.00180 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.02643 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 0.0005 5 6 4.2752 0.0072 0.0005 6 6 3.5846 -1.1956 0.0005 7 8 4.2659 -2.3715 0.0009 8 6 5.6879 -2.2976 -0.1193 9 1 5.9545 -1.4676 -0.7737 10 6 6.3057 -2.0761 1.2627 11 6 6.2103 -3.5851 -0.7027 12 8 5.4408 -4.4783 -0.9871 13 7 7.5328 -3.7439 -0.9085 14 6 8.4625 -2.6652 -0.5644 15 6 8.0401 -4.9933 -1.4812 16 1 7.2075 -5.6711 -1.6695 17 6 8.7625 -4.6950 -2.7965 18 6 9.0016 -5.6351 -0.5144 19 1 9.2132 -5.1601 0.4322 20 6 9.6103 -6.8292 -0.8379 21 7 10.4497 -7.3891 0.0056 22 14 9.2426 -7.6518 -2.4742 23 1 10.2046 -7.1699 -3.4977 24 1 9.3713 -9.1240 -2.3282 25 1 7.8595 -7.3154 -2.8976 26 6 2.1971 -1.1964 -0.0063 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6563 2.1325 0.0004 31 1 4.1174 2.1384 0.0010 32 1 5.3552 0.0105 0.0005 33 1 5.9279 -1.1448 1.6847 34 1 6.0392 -2.9060 1.9171 35 1 7.3904 -2.0192 1.1709 36 1 8.7935 -2.7860 0.4670 37 1 9.3251 -2.7030 -1.2297 38 1 7.9604 -1.7040 -0.6746 39 1 9.1396 -5.6245 -3.2228 40 1 8.0671 -4.2307 -3.4958 41 1 9.5951 -4.0171 -2.6082 42 1 10.8776 -8.2293 -0.2218 43 1 1.6571 -2.1318 -0.0117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -34.092984 kcal Electronic energy + Delta-G solvation = -23463.910472 eV Core-core repulsion = 20089.276129 eV Total energy + Delta-G solvation = -3374.634343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60110 -39.25097 -37.54500 -35.57012 -33.31451 -32.65550 -31.93799 -30.28422 -29.46738 -27.06980 -26.57992 -25.25080 -24.44625 -22.60184 -22.12874 -20.51365 -18.59885 -18.14311 -17.00362 -16.37879 -16.18402 -15.82876 -15.50979 -15.26920 -14.59941 -14.41519 -14.34733 -13.83292 -13.45616 -13.36647 -13.11246 -12.91035 -12.64239 -12.41698 -12.33551 -12.27215 -12.07166 -11.83278 -11.67678 -11.61588 -11.43740 -11.18667 -10.92585 -10.83764 -10.65167 -10.17704 -9.68241 -9.40009 -9.06935 -8.91285 -8.67091 -8.22417 -7.83922 -6.18069 -4.19244 1.18842 1.35608 2.83464 3.11431 3.21004 3.35338 3.37967 3.64169 3.89073 4.32335 4.61209 4.65653 4.75453 4.81458 4.97328 4.99510 5.08530 5.15259 5.19742 5.35418 5.39444 5.45676 5.55247 5.60664 5.63378 5.75979 5.84439 5.94850 6.06194 6.15703 6.20226 6.24500 6.28783 6.30702 6.41594 6.45224 6.66770 6.78599 7.02321 7.23675 7.41777 7.57144 8.06189 8.40282 8.74844 8.83525 9.42480 10.94554 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.003436 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.505168 B = 8146.315997 C = 8444.354569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.166 4.166 4 C -0.076 4.076 5 C -0.220 4.220 6 C 0.142 3.858 7 O -0.283 6.283 8 C 0.069 3.931 9 H 0.093 0.907 10 C -0.187 4.187 11 C 0.511 3.489 12 O -0.529 6.529 13 N -0.582 5.582 14 C 0.080 3.920 15 C 0.231 3.769 16 H 0.064 0.936 17 C -0.162 4.162 18 C -0.529 4.529 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.894 5.894 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.263 1.263 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.266 0.734 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 18.806 -0.300 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.094 4.094 5 C -0.238 4.238 6 C 0.095 3.905 7 O -0.195 6.195 8 C 0.010 3.990 9 H 0.111 0.889 10 C -0.244 4.244 11 C 0.296 3.704 12 O -0.405 6.405 13 N -0.315 5.315 14 C -0.063 4.063 15 C 0.130 3.870 16 H 0.081 0.919 17 C -0.220 4.220 18 C -0.567 4.567 19 H 0.098 0.902 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.712 3.288 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.188 1.188 26 C -0.173 4.173 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.462 17.944 -0.400 21.850 hybrid contribution 0.360 -0.309 -0.781 0.914 sum -12.101 17.635 -1.181 21.420 Atomic orbital electron populations 1.20804 0.90843 1.02910 1.02532 1.19692 0.95984 0.92253 0.97001 1.20897 0.94165 0.97388 1.05934 1.20901 0.94141 0.97274 0.97112 1.21319 1.00460 0.92271 1.09796 1.19105 0.91904 0.84870 0.94572 1.86235 1.18923 1.27391 1.86987 1.22264 0.79732 0.98273 0.98778 0.88899 1.22581 1.03040 1.03470 0.95353 1.19859 0.83051 0.87953 0.79514 1.90687 1.56002 1.42550 1.51308 1.47760 1.04423 1.17676 1.61612 1.21826 0.94444 0.88340 1.01706 1.19331 0.95437 0.81464 0.90818 0.91852 1.22473 1.00286 1.00916 0.98353 1.21129 1.24782 1.06795 1.03978 0.90249 1.24855 0.94355 0.96485 0.96964 1.69865 1.28650 1.18713 1.35895 0.86929 0.79655 0.78144 0.84086 1.20344 1.22051 1.18762 1.20334 0.90959 0.98759 1.07204 0.90929 0.91280 0.91396 0.86149 0.85868 0.85256 0.91242 0.90587 0.88887 0.92042 0.90382 0.92739 0.92974 0.94737 0.92414 0.92370 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.05 -0.52 5.88 -104.65 -0.62 -1.14 16 3 C -0.17 -1.62 9.70 -39.56 -0.38 -2.00 16 4 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 5 C -0.22 -2.57 8.24 -39.43 -0.33 -2.90 16 6 C 0.14 2.01 6.60 -39.22 -0.26 1.75 16 7 O -0.28 -4.83 9.33 -39.33 -0.37 -5.19 16 8 C 0.07 1.08 1.84 -27.89 -0.05 1.03 16 9 H 0.09 1.19 5.57 -51.93 -0.29 0.90 16 10 C -0.19 -2.45 8.81 37.15 0.33 -2.12 16 11 C 0.51 10.46 7.15 -10.99 -0.08 10.38 16 12 O -0.53 -13.20 15.83 -14.35 -0.23 -13.42 16 13 N -0.58 -11.72 2.75 -175.26 -0.48 -12.21 16 14 C 0.08 1.22 8.04 59.85 0.48 1.70 16 15 C 0.23 5.52 2.23 -69.09 -0.15 5.37 16 16 H 0.06 1.70 5.95 -51.93 -0.31 1.40 16 17 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 18 C -0.53 -14.42 8.95 -34.44 -0.31 -14.73 16 19 H 0.08 2.31 7.89 -52.49 -0.41 1.90 16 20 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 21 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 22 Si 0.88 21.71 24.37 -169.99 -4.14 17.57 16 23 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 26 C -0.15 -1.99 9.64 -39.44 -0.38 -2.37 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.31 5.43 -52.48 -0.28 1.03 16 33 H 0.07 0.75 6.91 -51.93 -0.36 0.40 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.10 4.53 -51.93 -0.24 0.87 16 36 H 0.06 0.92 6.95 -51.93 -0.36 0.56 16 37 H 0.08 1.17 6.43 -51.93 -0.33 0.84 16 38 H 0.05 0.61 6.01 -51.93 -0.31 0.30 16 39 H 0.05 1.15 3.28 -51.93 -0.17 0.98 16 40 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -33.60 336.68 -6.90 -40.50 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.97 Total: 1.35 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.56 Total: -7.75 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.29 Total: -38.12 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.59 Total: -18.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.60 -6.90 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.407 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds