Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38290 * 119.96678 * 2 1 4 4 C 1.38251 * 120.10960 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05193 * 0.02759 * 4 3 2 6 6 C 1.38703 * 119.94476 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.05309 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00312 * 354.55698 * 7 6 5 9 9 H 1.09007 * 109.46984 * 324.95895 * 8 7 6 10 10 C 1.52992 * 109.47338 * 84.95595 * 8 7 6 11 11 C 1.50700 * 109.47226 * 204.96141 * 8 7 6 12 12 O 1.21277 * 120.00087 * 359.97438 * 11 8 7 13 13 N 1.34777 * 119.99933 * 179.97438 * 11 8 7 14 14 C 1.46507 * 120.00113 * 0.02562 * 13 11 8 15 15 C 1.46499 * 120.00016 * 180.27316 * 13 11 8 16 16 H 1.09000 * 109.47004 * 359.72823 * 15 13 11 17 17 C 1.52995 * 109.46984 * 119.72923 * 15 13 11 18 18 C 1.50699 * 109.47114 * 239.72720 * 15 13 11 19 19 H 1.08001 * 120.00110 * 0.02562 * 18 15 13 20 20 C 1.37877 * 119.99872 * 179.97438 * 18 15 13 21 21 N 1.31516 * 120.00213 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00021 * 359.97438 * 20 18 15 23 23 H 1.48503 * 109.46878 * 90.00023 * 22 20 18 24 24 H 1.48499 * 109.47215 * 209.99841 * 22 20 18 25 25 H 1.48497 * 109.47051 * 330.00050 * 22 20 18 26 26 C 1.38120 * 119.97604 * 180.30391 * 2 1 3 27 27 H 1.09003 * 109.47572 * 89.99779 * 1 2 3 28 28 H 1.08998 * 109.46889 * 210.00067 * 1 2 3 29 29 H 1.08998 * 109.47173 * 329.99820 * 1 2 3 30 30 H 1.08002 * 119.94744 * 0.02562 * 3 2 1 31 31 H 1.07994 * 119.96949 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.02364 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47572 * 300.00192 * 10 8 7 34 34 H 1.09003 * 109.47310 * 60.00228 * 10 8 7 35 35 H 1.09005 * 109.47204 * 180.02562 * 10 8 7 36 36 H 1.08997 * 109.47112 * 89.99394 * 14 13 11 37 37 H 1.09000 * 109.47242 * 209.99850 * 14 13 11 38 38 H 1.09002 * 109.46521 * 330.00143 * 14 13 11 39 39 H 1.09002 * 109.47215 * 180.02562 * 17 15 13 40 40 H 1.09008 * 109.47240 * 299.99775 * 17 15 13 41 41 H 1.09001 * 109.47784 * 59.99834 * 17 15 13 42 42 H 0.96994 * 120.00180 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.02643 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 0.0005 5 6 4.2752 0.0072 0.0005 6 6 3.5846 -1.1956 0.0005 7 8 4.2659 -2.3715 0.0009 8 6 5.6879 -2.2976 -0.1193 9 1 5.9545 -1.4676 -0.7737 10 6 6.3057 -2.0761 1.2627 11 6 6.2103 -3.5851 -0.7027 12 8 5.4408 -4.4783 -0.9871 13 7 7.5328 -3.7439 -0.9085 14 6 8.4625 -2.6652 -0.5644 15 6 8.0401 -4.9933 -1.4812 16 1 7.2075 -5.6711 -1.6695 17 6 8.7625 -4.6950 -2.7965 18 6 9.0016 -5.6351 -0.5144 19 1 9.2132 -5.1601 0.4322 20 6 9.6103 -6.8292 -0.8379 21 7 10.4497 -7.3891 0.0056 22 14 9.2426 -7.6518 -2.4742 23 1 10.2046 -7.1699 -3.4977 24 1 9.3713 -9.1240 -2.3282 25 1 7.8595 -7.3154 -2.8976 26 6 2.1971 -1.1964 -0.0063 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6563 2.1325 0.0004 31 1 4.1174 2.1384 0.0010 32 1 5.3552 0.0105 0.0005 33 1 5.9279 -1.1448 1.6847 34 1 6.0392 -2.9060 1.9171 35 1 7.3904 -2.0192 1.1709 36 1 8.7935 -2.7860 0.4670 37 1 9.3251 -2.7030 -1.2297 38 1 7.9604 -1.7040 -0.6746 39 1 9.1396 -5.6245 -3.2228 40 1 8.0671 -4.2307 -3.4958 41 1 9.5951 -4.0171 -2.6082 42 1 10.8776 -8.2293 -0.2218 43 1 1.6571 -2.1318 -0.0117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -55.364934 kcal Electronic energy + Delta-G solvation = -23464.832893 eV Core-core repulsion = 20089.276129 eV Total energy + Delta-G solvation = -3375.556764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78489 -40.55731 -38.62119 -37.29988 -35.08476 -33.57188 -33.40482 -31.68990 -30.57823 -27.95362 -27.79026 -27.20895 -25.76999 -23.53950 -23.39955 -21.78283 -20.11991 -19.28307 -18.83246 -17.77353 -17.66614 -17.03541 -16.72557 -16.57205 -16.01174 -15.92143 -15.23078 -14.96902 -14.82470 -14.58031 -14.34605 -14.13743 -14.11134 -13.83888 -13.68870 -13.43820 -13.30011 -13.03651 -12.94094 -12.84198 -12.71139 -12.45406 -12.28775 -12.07168 -11.91148 -11.71715 -11.60480 -11.37794 -10.81942 -10.67922 -9.73410 -9.50642 -9.14564 -8.37199 -6.41806 0.37179 0.48976 1.23833 1.34460 1.42544 1.48216 1.67125 2.25745 2.56461 2.80912 2.98035 3.37243 3.62613 3.84837 3.93681 3.94301 4.19077 4.27526 4.35697 4.40936 4.44633 4.51703 4.54534 4.55718 4.61443 4.65157 4.70404 4.83605 4.88945 4.91869 5.00415 5.02262 5.15992 5.25496 5.27959 5.38743 5.44333 5.50640 5.63338 5.66486 5.87786 6.15775 6.41313 6.57519 6.63164 7.12969 7.27453 8.78637 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.003436 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.505168 B = 8146.315997 C = 8444.354569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.163 4.163 4 C -0.074 4.074 5 C -0.223 4.223 6 C 0.110 3.890 7 O -0.319 6.319 8 C 0.081 3.919 9 H 0.128 0.872 10 C -0.180 4.180 11 C 0.499 3.501 12 O -0.588 6.588 13 N -0.586 5.586 14 C 0.071 3.929 15 C 0.231 3.769 16 H 0.027 0.973 17 C -0.155 4.155 18 C -0.526 4.526 19 H 0.050 0.950 20 C 0.025 3.975 21 N -0.937 5.937 22 Si 0.938 3.062 23 H -0.250 1.250 24 H -0.296 1.296 25 H -0.266 1.266 26 C -0.180 4.180 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.269 0.731 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.368 22.591 -1.329 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.181 4.181 4 C -0.091 4.091 5 C -0.242 4.242 6 C 0.065 3.935 7 O -0.233 6.233 8 C 0.021 3.979 9 H 0.145 0.855 10 C -0.237 4.237 11 C 0.287 3.713 12 O -0.469 6.469 13 N -0.317 5.317 14 C -0.070 4.070 15 C 0.128 3.872 16 H 0.045 0.955 17 C -0.212 4.212 18 C -0.564 4.564 19 H 0.068 0.932 20 C -0.174 4.174 21 N -0.577 5.577 22 Si 0.765 3.235 23 H -0.175 1.175 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.199 4.199 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.690 21.786 -1.426 25.253 hybrid contribution 0.338 -1.390 -0.364 1.476 sum -12.352 20.397 -1.790 23.912 Atomic orbital electron populations 1.20870 0.88972 1.03856 1.03338 1.20042 0.97466 0.91766 0.96037 1.21333 0.94542 0.98062 1.04157 1.21334 0.94450 0.97894 0.95470 1.21540 1.01390 0.91778 1.09466 1.19402 0.92281 0.84908 0.96928 1.86180 1.19522 1.29655 1.87911 1.22203 0.79674 0.95796 1.00177 0.85475 1.22573 1.03813 1.03794 0.93510 1.20857 0.82652 0.89276 0.78521 1.90645 1.57453 1.45032 1.53748 1.47803 1.05333 1.17486 1.61061 1.22174 0.94285 0.88800 1.01772 1.19007 0.93476 0.82916 0.91813 0.95540 1.22325 1.01063 1.01114 0.96735 1.21334 1.24703 1.06842 1.03552 0.93209 1.25606 0.94291 0.97212 1.00301 1.69986 1.30262 1.19471 1.37961 0.86027 0.79777 0.76865 0.80817 1.17474 1.22366 1.19117 1.20511 0.91106 0.99462 1.08819 0.90086 0.91496 0.89335 0.83174 0.82557 0.83535 0.88315 0.93251 0.87407 0.92051 0.89886 0.87890 0.93897 0.92544 0.90362 0.92201 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.05 -1.03 5.88 -19.88 -0.12 -1.15 16 3 C -0.16 -2.60 9.70 22.29 0.22 -2.38 16 4 C -0.07 -1.17 10.04 22.26 0.22 -0.95 16 5 C -0.22 -4.58 8.24 22.36 0.18 -4.40 16 6 C 0.11 3.05 6.60 22.50 0.15 3.20 16 7 O -0.32 -11.06 9.33 -73.37 -0.68 -11.75 16 8 C 0.08 2.42 1.84 29.85 0.05 2.48 16 9 H 0.13 2.86 5.57 -2.38 -0.01 2.85 16 10 C -0.18 -4.43 8.81 71.98 0.63 -3.80 16 11 C 0.50 20.70 7.15 87.66 0.63 21.33 16 12 O -0.59 -30.80 15.83 16.02 0.25 -30.55 16 13 N -0.59 -23.39 2.75 -826.79 -2.28 -25.66 16 14 C 0.07 2.00 8.04 127.77 1.03 3.02 16 15 C 0.23 11.14 2.23 44.24 0.10 11.24 16 16 H 0.03 1.48 5.95 -2.39 -0.01 1.47 16 17 C -0.15 -6.27 8.65 71.98 0.62 -5.65 16 18 C -0.53 -29.37 8.95 25.60 0.23 -29.14 16 19 H 0.05 3.00 7.89 -2.91 -0.02 2.98 16 20 C 0.02 1.43 5.45 84.65 0.46 1.89 16 21 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 22 Si 0.94 45.22 24.37 68.60 1.67 46.89 16 23 H -0.25 -10.89 6.87 99.48 0.68 -10.21 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.88 6.53 99.48 0.65 -12.23 16 26 C -0.18 -4.70 9.64 22.36 0.22 -4.49 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.91 8.09 -2.39 -0.02 0.90 16 29 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.15 2.35 5.43 -2.91 -0.02 2.34 16 33 H 0.10 1.86 6.91 -2.39 -0.02 1.84 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 2.29 4.53 -2.38 -0.01 2.28 16 36 H 0.06 1.74 6.95 -2.39 -0.02 1.73 16 37 H 0.08 2.27 6.43 -2.39 -0.02 2.25 16 38 H 0.10 1.88 6.01 -2.39 -0.01 1.87 16 39 H 0.04 1.81 3.28 -2.39 -0.01 1.81 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.08 2.82 6.66 -2.39 -0.02 2.80 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -78.27 336.68 5.54 -72.73 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.94 Total: 14.98 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.34 Total: -9.60 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.98 Total: -82.70 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.43 Total: -42.30 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -78.27 5.54 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.364 kcal (2) G-P(sol) polarization free energy of solvation -78.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds