Wall clock time and date at job start Tue Mar 31 2020 07:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.97455 * 2 1 4 4 C 1.38248 * 120.10930 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05802 * 359.97438 * 4 3 2 6 6 C 1.38714 * 119.94640 * 359.97438 * 5 4 3 7 7 O 1.35897 * 120.05558 * 180.02562 * 6 5 4 8 8 C 1.42895 * 117.00288 * 355.64630 * 7 6 5 9 9 H 1.08998 * 109.47027 * 36.07987 * 8 7 6 10 10 C 1.53007 * 109.47109 * 276.08093 * 8 7 6 11 11 C 1.50699 * 109.47108 * 156.08114 * 8 7 6 12 12 O 1.21281 * 119.99980 * 9.71181 * 11 8 7 13 13 N 1.34777 * 119.99894 * 189.71393 * 11 8 7 14 14 C 1.46495 * 120.00047 * 185.61687 * 13 11 8 15 15 C 1.46497 * 120.00219 * 5.61324 * 13 11 8 16 16 H 1.09012 * 109.47163 * 4.54219 * 15 13 11 17 17 C 1.53001 * 109.47427 * 124.54352 * 15 13 11 18 18 C 1.50697 * 109.47518 * 244.54479 * 15 13 11 19 19 H 1.08000 * 119.99867 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00298 * 179.97438 * 18 15 13 21 21 N 1.31515 * 119.99874 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99756 * 0.02562 * 20 18 15 23 23 H 1.48502 * 109.47035 * 90.00016 * 22 20 18 24 24 H 1.48503 * 109.46759 * 209.99776 * 22 20 18 25 25 H 1.48496 * 109.47104 * 329.99435 * 22 20 18 26 26 C 1.38132 * 119.96861 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46900 * 270.02365 * 1 2 3 28 28 H 1.08996 * 109.47079 * 30.01870 * 1 2 3 29 29 H 1.08997 * 109.47259 * 150.02671 * 1 2 3 30 30 H 1.07995 * 119.94398 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96776 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.03046 * 180.28018 * 5 4 3 33 33 H 1.09000 * 109.46699 * 294.92368 * 10 8 7 34 34 H 1.08996 * 109.47229 * 54.92389 * 10 8 7 35 35 H 1.08997 * 109.47040 * 174.92677 * 10 8 7 36 36 H 1.09002 * 109.47486 * 94.97642 * 14 13 11 37 37 H 1.08997 * 109.47709 * 214.97335 * 14 13 11 38 38 H 1.09002 * 109.47575 * 334.98029 * 14 13 11 39 39 H 1.08999 * 109.47440 * 180.02562 * 17 15 13 40 40 H 1.09004 * 109.46888 * 300.00488 * 17 15 13 41 41 H 1.09000 * 109.46611 * 59.99882 * 17 15 13 42 42 H 0.96998 * 119.99589 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.02879 * 0.03859 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.2752 0.0070 0.0016 6 6 3.5845 -1.1960 0.0027 7 8 4.2657 -2.3719 0.0043 8 6 5.6895 -2.2971 -0.0919 9 1 6.0454 -1.4256 0.4575 10 6 6.0956 -2.1740 -1.5620 11 6 6.2988 -3.5442 0.4949 12 8 5.5913 -4.4845 0.7885 13 7 7.6301 -3.6146 0.6934 14 6 8.2376 -4.8679 1.1475 15 6 8.4695 -2.4379 0.4551 16 1 7.8378 -1.5860 0.2029 17 6 9.2733 -2.1206 1.7177 18 6 9.4145 -2.7174 -0.6850 19 1 9.3923 -3.6759 -1.1820 20 6 10.3074 -1.7495 -1.0935 21 7 11.1317 -1.9933 -2.0888 22 14 10.3462 -0.0918 -0.2332 23 1 11.3042 -0.1446 0.9002 24 1 10.7748 0.9552 -1.1952 25 1 8.9905 0.2319 0.2790 26 6 2.1970 -1.1966 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6566 2.1324 -0.0004 31 1 4.1176 2.1381 0.0001 32 1 5.3552 0.0100 0.0066 33 1 5.8194 -3.0852 -2.0926 34 1 5.5833 -1.3229 -2.0104 35 1 7.1734 -2.0265 -1.6300 36 1 8.5985 -5.4298 0.2860 37 1 9.0724 -4.6470 1.8127 38 1 7.4942 -5.4596 1.6816 39 1 9.8976 -1.2448 1.5405 40 1 8.5898 -1.9184 2.5424 41 1 9.9049 -2.9724 1.9698 42 1 11.7601 -1.3125 -2.3759 43 1 1.6570 -2.1319 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:38 Heat of formation + Delta-G solvation = -38.572578 kcal Electronic energy + Delta-G solvation = -23945.280966 eV Core-core repulsion = 20570.452373 eV Total energy + Delta-G solvation = -3374.828593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47546 -39.20325 -37.41213 -35.87296 -32.70021 -32.53173 -31.95139 -30.23484 -29.69103 -27.02458 -26.63115 -25.39433 -23.91558 -22.47010 -21.84763 -20.89479 -18.48123 -18.13151 -16.92038 -16.54057 -16.02067 -15.63365 -15.38990 -15.08743 -14.88578 -14.22864 -14.06298 -13.67613 -13.50398 -13.29048 -13.15426 -12.77616 -12.60437 -12.45671 -12.28222 -12.00729 -11.94025 -11.88108 -11.54560 -11.51059 -11.40173 -11.18180 -10.83803 -10.76770 -10.54122 -10.32105 -9.88806 -9.56734 -9.14484 -8.82351 -8.78943 -8.08231 -7.87757 -6.33335 -4.36662 1.32318 1.49151 2.96362 3.06079 3.08149 3.13472 3.20753 3.76342 3.99141 4.13649 4.76617 4.79780 4.91544 4.94173 4.99151 5.14094 5.23167 5.30358 5.34917 5.46331 5.49506 5.68564 5.77821 5.83762 5.92606 6.05133 6.06105 6.07898 6.13202 6.15934 6.22311 6.39203 6.41098 6.46246 6.47206 6.56633 6.67245 6.76819 6.81855 7.12699 7.38680 7.55564 7.92600 8.32143 8.66529 8.75018 9.25283 10.78803 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.004901 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.879069 B = 5711.553629 C = 6665.117714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.166 4.166 4 C -0.074 4.074 5 C -0.219 4.219 6 C 0.143 3.857 7 O -0.288 6.288 8 C 0.069 3.931 9 H 0.094 0.906 10 C -0.180 4.180 11 C 0.520 3.480 12 O -0.547 6.547 13 N -0.582 5.582 14 C 0.094 3.906 15 C 0.223 3.777 16 H 0.047 0.953 17 C -0.167 4.167 18 C -0.534 4.534 19 H 0.084 0.916 20 C 0.080 3.920 21 N -0.885 5.885 22 Si 0.879 3.121 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.267 1.267 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.268 0.732 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.410 6.170 4.588 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.051 4.051 3 C -0.185 4.185 4 C -0.092 4.092 5 C -0.238 4.238 6 C 0.097 3.903 7 O -0.201 6.201 8 C 0.010 3.990 9 H 0.112 0.888 10 C -0.238 4.238 11 C 0.306 3.694 12 O -0.426 6.426 13 N -0.314 5.314 14 C -0.048 4.048 15 C 0.120 3.880 16 H 0.065 0.935 17 C -0.225 4.225 18 C -0.572 4.572 19 H 0.102 0.898 20 C -0.125 4.125 21 N -0.521 5.521 22 Si 0.709 3.291 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.192 1.192 26 C -0.174 4.174 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.669 5.526 4.629 15.453 hybrid contribution 0.666 1.194 0.335 1.407 sum -13.003 6.719 4.965 15.456 Atomic orbital electron populations 1.20786 0.90935 1.02819 1.02397 1.19663 0.95867 0.92285 0.97302 1.20877 0.94117 0.97349 1.06130 1.20913 0.94106 0.97348 0.96862 1.21376 1.00783 0.92352 1.09242 1.19082 0.91841 0.84914 0.94430 1.86181 1.19168 1.27401 1.87326 1.22302 0.79084 0.98360 0.99254 0.88845 1.22442 1.05808 1.03027 0.92494 1.19838 0.82625 0.88232 0.78730 1.90643 1.60835 1.39127 1.51947 1.47744 1.05401 1.13620 1.64595 1.21472 0.97952 0.85667 0.99724 1.19520 0.90534 0.83696 0.94209 0.93536 1.22508 1.00262 1.01534 0.98201 1.21142 1.17924 1.03107 1.15021 0.89819 1.24896 0.94770 0.98164 0.94638 1.69863 1.20950 1.34717 1.26579 0.87000 0.79049 0.84134 0.78963 1.20122 1.21880 1.19172 1.20278 0.90840 0.98611 1.07721 0.91044 0.91451 0.91377 0.86204 0.85845 0.85111 0.91311 0.91642 0.86960 0.92616 0.91249 0.91527 0.92889 0.94553 0.91831 0.92153 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.59 16 2 C -0.05 -0.60 5.88 -104.64 -0.62 -1.22 16 3 C -0.17 -1.90 9.70 -39.56 -0.38 -2.29 16 4 C -0.07 -0.92 10.04 -39.61 -0.40 -1.32 16 5 C -0.22 -3.20 8.46 -39.43 -0.33 -3.53 16 6 C 0.14 2.30 6.51 -39.21 -0.26 2.05 16 7 O -0.29 -5.36 9.36 -39.14 -0.37 -5.73 16 8 C 0.07 1.28 1.81 -27.88 -0.05 1.23 16 9 H 0.09 1.61 4.65 -51.93 -0.24 1.37 16 10 C -0.18 -3.20 9.01 37.16 0.33 -2.87 16 11 C 0.52 10.82 7.01 -10.99 -0.08 10.74 16 12 O -0.55 -12.71 16.01 -14.17 -0.23 -12.94 16 13 N -0.58 -11.78 2.75 -175.26 -0.48 -12.26 16 14 C 0.09 1.72 10.00 59.84 0.60 2.32 16 15 C 0.22 4.66 1.41 -69.08 -0.10 4.57 16 16 H 0.05 0.96 3.92 -51.92 -0.20 0.76 16 17 C -0.17 -3.23 8.54 37.16 0.32 -2.91 16 18 C -0.53 -13.14 7.89 -34.44 -0.27 -13.42 16 19 H 0.08 2.31 8.03 -52.49 -0.42 1.89 16 20 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 21 N -0.88 -24.54 13.96 55.43 0.77 -23.77 16 22 Si 0.88 19.30 24.37 -169.99 -4.14 15.16 16 23 H -0.27 -5.93 6.87 56.52 0.39 -5.54 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -5.42 6.53 56.52 0.37 -5.05 16 26 C -0.16 -2.19 9.64 -39.43 -0.38 -2.57 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.13 1.89 5.78 -52.48 -0.30 1.59 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.03 7.50 -51.93 -0.39 0.64 16 35 H 0.11 2.20 5.41 -51.93 -0.28 1.92 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.15 6.24 -51.93 -0.32 0.83 16 38 H 0.07 1.17 7.22 -51.93 -0.37 0.80 16 39 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.18 6.58 -51.93 -0.34 0.84 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -29.45 338.12 -6.73 -36.18 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.03 Total: 6.14 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.35 Total: -7.87 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.29 Total: -36.03 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.59 Total: -18.67 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.14 Total: 15.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.45 -6.73 -36.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.393 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds