Wall clock time and date at job start Tue Mar 31 2020 07:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.97455 * 2 1 4 4 C 1.38248 * 120.10930 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05802 * 359.97438 * 4 3 2 6 6 C 1.38714 * 119.94640 * 359.97438 * 5 4 3 7 7 O 1.35897 * 120.05558 * 180.02562 * 6 5 4 8 8 C 1.42895 * 117.00288 * 355.64630 * 7 6 5 9 9 H 1.08998 * 109.47027 * 36.07987 * 8 7 6 10 10 C 1.53007 * 109.47109 * 276.08093 * 8 7 6 11 11 C 1.50699 * 109.47108 * 156.08114 * 8 7 6 12 12 O 1.21281 * 119.99980 * 9.71181 * 11 8 7 13 13 N 1.34777 * 119.99894 * 189.71393 * 11 8 7 14 14 C 1.46495 * 120.00047 * 185.61687 * 13 11 8 15 15 C 1.46497 * 120.00219 * 5.61324 * 13 11 8 16 16 H 1.09012 * 109.47163 * 4.54219 * 15 13 11 17 17 C 1.53001 * 109.47427 * 124.54352 * 15 13 11 18 18 C 1.50697 * 109.47518 * 244.54479 * 15 13 11 19 19 H 1.08000 * 119.99867 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00298 * 179.97438 * 18 15 13 21 21 N 1.31515 * 119.99874 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99756 * 0.02562 * 20 18 15 23 23 H 1.48502 * 109.47035 * 90.00016 * 22 20 18 24 24 H 1.48503 * 109.46759 * 209.99776 * 22 20 18 25 25 H 1.48496 * 109.47104 * 329.99435 * 22 20 18 26 26 C 1.38132 * 119.96861 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46900 * 270.02365 * 1 2 3 28 28 H 1.08996 * 109.47079 * 30.01870 * 1 2 3 29 29 H 1.08997 * 109.47259 * 150.02671 * 1 2 3 30 30 H 1.07995 * 119.94398 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96776 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.03046 * 180.28018 * 5 4 3 33 33 H 1.09000 * 109.46699 * 294.92368 * 10 8 7 34 34 H 1.08996 * 109.47229 * 54.92389 * 10 8 7 35 35 H 1.08997 * 109.47040 * 174.92677 * 10 8 7 36 36 H 1.09002 * 109.47486 * 94.97642 * 14 13 11 37 37 H 1.08997 * 109.47709 * 214.97335 * 14 13 11 38 38 H 1.09002 * 109.47575 * 334.98029 * 14 13 11 39 39 H 1.08999 * 109.47440 * 180.02562 * 17 15 13 40 40 H 1.09004 * 109.46888 * 300.00488 * 17 15 13 41 41 H 1.09000 * 109.46611 * 59.99882 * 17 15 13 42 42 H 0.96998 * 119.99589 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.02879 * 0.03859 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.2752 0.0070 0.0016 6 6 3.5845 -1.1960 0.0027 7 8 4.2657 -2.3719 0.0043 8 6 5.6895 -2.2971 -0.0919 9 1 6.0454 -1.4256 0.4575 10 6 6.0956 -2.1740 -1.5620 11 6 6.2988 -3.5442 0.4949 12 8 5.5913 -4.4845 0.7885 13 7 7.6301 -3.6146 0.6934 14 6 8.2376 -4.8679 1.1475 15 6 8.4695 -2.4379 0.4551 16 1 7.8378 -1.5860 0.2029 17 6 9.2733 -2.1206 1.7177 18 6 9.4145 -2.7174 -0.6850 19 1 9.3923 -3.6759 -1.1820 20 6 10.3074 -1.7495 -1.0935 21 7 11.1317 -1.9933 -2.0888 22 14 10.3462 -0.0918 -0.2332 23 1 11.3042 -0.1446 0.9002 24 1 10.7748 0.9552 -1.1952 25 1 8.9905 0.2319 0.2790 26 6 2.1970 -1.1966 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6566 2.1324 -0.0004 31 1 4.1176 2.1381 0.0001 32 1 5.3552 0.0100 0.0066 33 1 5.8194 -3.0852 -2.0926 34 1 5.5833 -1.3229 -2.0104 35 1 7.1734 -2.0265 -1.6300 36 1 8.5985 -5.4298 0.2860 37 1 9.0724 -4.6470 1.8127 38 1 7.4942 -5.4596 1.6816 39 1 9.8976 -1.2448 1.5405 40 1 8.5898 -1.9184 2.5424 41 1 9.9049 -2.9724 1.9698 42 1 11.7601 -1.3125 -2.3759 43 1 1.6570 -2.1319 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:37 Heat of formation + Delta-G solvation = -55.003079 kcal Electronic energy + Delta-G solvation = -23945.993446 eV Core-core repulsion = 20570.452373 eV Total energy + Delta-G solvation = -3375.541073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82171 -40.57384 -38.60609 -37.58679 -34.59919 -33.42809 -33.32527 -31.95155 -30.78241 -28.25524 -27.77323 -27.21015 -25.35934 -23.47149 -23.45371 -22.10689 -20.00313 -19.47611 -18.66135 -18.07177 -17.33833 -16.98477 -16.77659 -16.56576 -16.21233 -15.67497 -15.21034 -15.06850 -14.86721 -14.50286 -14.35675 -14.16920 -14.07355 -13.91136 -13.63901 -13.41544 -13.27508 -13.05597 -12.94273 -12.82115 -12.70103 -12.42164 -12.38156 -12.09109 -11.96404 -11.69146 -11.53609 -11.40809 -10.86292 -10.68712 -9.75332 -9.56319 -9.16429 -8.30647 -6.38344 0.34778 0.47432 1.34839 1.38261 1.43533 1.48822 1.58547 2.30290 2.52706 2.78767 3.02814 3.33599 3.57633 3.84971 3.91525 3.93241 4.19043 4.24342 4.31805 4.41816 4.45231 4.50297 4.53150 4.60220 4.64037 4.67728 4.70636 4.85811 4.86192 4.88143 4.91194 5.01646 5.16257 5.22927 5.25735 5.37309 5.42180 5.49701 5.62790 5.65582 5.86363 6.08774 6.36628 6.53766 6.67181 7.05283 7.28493 8.85155 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.004901 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.879069 B = 5711.553629 C = 6665.117714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.050 4.050 3 C -0.161 4.161 4 C -0.076 4.076 5 C -0.232 4.232 6 C 0.111 3.889 7 O -0.311 6.311 8 C 0.076 3.924 9 H 0.109 0.891 10 C -0.170 4.170 11 C 0.513 3.487 12 O -0.577 6.577 13 N -0.584 5.584 14 C 0.092 3.908 15 C 0.225 3.775 16 H 0.058 0.942 17 C -0.166 4.166 18 C -0.526 4.526 19 H 0.039 0.961 20 C 0.029 3.971 21 N -0.937 5.937 22 Si 0.933 3.067 23 H -0.264 1.264 24 H -0.298 1.298 25 H -0.236 1.236 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.268 0.732 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 9.081 6.131 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.050 4.050 3 C -0.179 4.179 4 C -0.094 4.094 5 C -0.251 4.251 6 C 0.066 3.934 7 O -0.225 6.225 8 C 0.017 3.983 9 H 0.126 0.874 10 C -0.228 4.228 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.315 5.315 14 C -0.050 4.050 15 C 0.123 3.877 16 H 0.076 0.924 17 C -0.224 4.224 18 C -0.564 4.564 19 H 0.058 0.942 20 C -0.171 4.171 21 N -0.576 5.576 22 Si 0.759 3.241 23 H -0.189 1.189 24 H -0.226 1.226 25 H -0.159 1.159 26 C -0.191 4.191 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.429 8.435 6.193 18.643 hybrid contribution 1.101 0.238 -0.194 1.143 sum -14.328 8.674 5.999 17.790 Atomic orbital electron populations 1.20868 0.88461 1.04005 1.03499 1.20080 0.97668 0.91568 0.95679 1.21315 0.93989 0.98456 1.04110 1.21271 0.94822 0.97485 0.95793 1.21462 1.00815 0.92696 1.10119 1.19402 0.92531 0.84629 0.96841 1.86139 1.18810 1.29285 1.88227 1.22157 0.79676 0.97362 0.99098 0.87371 1.22313 1.04541 1.03329 0.92582 1.20338 0.82613 0.88804 0.78193 1.90614 1.61462 1.40412 1.53266 1.47832 1.05392 1.14026 1.64214 1.21568 0.98672 0.85153 0.99635 1.19451 0.90114 0.84214 0.93930 0.92427 1.22447 1.00512 1.01622 0.97801 1.21201 1.18346 1.01186 1.15685 0.94229 1.25654 0.94261 1.02008 0.95144 1.70015 1.22449 1.36225 1.28861 0.86100 0.80839 0.79134 0.78004 1.18945 1.22620 1.15892 1.20506 0.90372 0.99761 1.08425 0.89837 0.89449 0.91091 0.82977 0.83288 0.85356 0.92463 0.89614 0.88867 0.93770 0.89359 0.90924 0.93005 0.91765 0.91516 0.92236 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 2 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 3 C -0.16 -3.07 9.70 22.28 0.22 -2.85 16 4 C -0.08 -1.64 10.04 22.25 0.22 -1.41 16 5 C -0.23 -6.37 8.46 22.37 0.19 -6.18 16 6 C 0.11 3.49 6.51 22.51 0.15 3.63 16 7 O -0.31 -11.66 9.36 -73.53 -0.69 -12.35 16 8 C 0.08 2.80 1.81 29.85 0.05 2.85 16 9 H 0.11 3.59 4.65 -2.39 -0.01 3.58 16 10 C -0.17 -6.09 9.01 71.98 0.65 -5.45 16 11 C 0.51 21.49 7.01 87.66 0.61 22.11 16 12 O -0.58 -27.25 16.01 15.82 0.25 -27.00 16 13 N -0.58 -23.53 2.75 -826.80 -2.28 -25.81 16 14 C 0.09 3.36 10.00 127.77 1.28 4.64 16 15 C 0.23 9.19 1.41 44.25 0.06 9.26 16 16 H 0.06 2.26 3.92 -2.38 -0.01 2.25 16 17 C -0.17 -5.95 8.54 71.98 0.61 -5.33 16 18 C -0.53 -26.29 7.89 25.60 0.20 -26.09 16 19 H 0.04 2.29 8.03 -2.91 -0.02 2.26 16 20 C 0.03 1.49 5.45 84.65 0.46 1.95 16 21 N -0.94 -53.39 13.96 21.45 0.30 -53.09 16 22 Si 0.93 38.44 24.37 68.60 1.67 40.11 16 23 H -0.26 -10.38 6.87 99.48 0.68 -9.70 16 24 H -0.30 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.24 -8.46 6.53 99.48 0.65 -7.81 16 26 C -0.17 -4.68 9.64 22.37 0.22 -4.47 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 29 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.13 3.47 5.78 -2.91 -0.02 3.45 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 2.67 7.50 -2.39 -0.02 2.65 16 35 H 0.09 3.70 5.41 -2.39 -0.01 3.68 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 2.85 6.24 -2.39 -0.01 2.84 16 38 H 0.07 2.56 7.22 -2.39 -0.02 2.54 16 39 H 0.05 1.88 3.27 -2.39 -0.01 1.88 16 40 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.07 2.33 6.58 -2.39 -0.02 2.31 16 42 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -65.45 338.12 5.72 -59.73 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.94 Total: 27.72 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.52 Total: -9.32 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -1.98 Total: -78.90 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.43 Total: -39.35 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.67 Total: 40.11 kcal Total: -65.45 5.72 -59.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.730 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds