Wall clock time and date at job start Tue Mar 31 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38287 * 119.97463 * 2 1 4 4 C 1.38241 * 120.11319 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05613 * 0.02562 * 4 3 2 6 6 C 1.38714 * 119.94499 * 359.97438 * 5 4 3 7 7 O 1.35904 * 120.05562 * 180.02562 * 6 5 4 8 8 C 1.42909 * 116.99762 * 185.36258 * 7 6 5 9 9 H 1.08997 * 109.46774 * 35.32633 * 8 7 6 10 10 C 1.53001 * 109.46665 * 275.32661 * 8 7 6 11 11 C 1.50696 * 109.46780 * 155.32469 * 8 7 6 12 12 O 1.21277 * 120.00413 * 5.00408 * 11 8 7 13 13 N 1.34778 * 119.99983 * 184.99595 * 11 8 7 14 14 C 1.46506 * 119.99574 * 0.02562 * 13 11 8 15 15 C 1.46495 * 120.00436 * 180.02562 * 13 11 8 16 16 H 1.09009 * 109.46980 * 359.97438 * 15 13 11 17 17 C 1.52996 * 109.47298 * 240.00623 * 15 13 11 18 18 C 1.50700 * 109.47261 * 119.99940 * 15 13 11 19 19 H 1.07997 * 119.99912 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99982 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99752 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00078 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47018 * 59.99850 * 22 20 18 24 24 H 1.48500 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47011 * 300.00136 * 22 20 18 26 26 C 1.38127 * 119.97195 * 180.29480 * 2 1 3 27 27 H 1.09007 * 109.46692 * 90.00072 * 1 2 3 28 28 H 1.09000 * 109.47333 * 209.99713 * 1 2 3 29 29 H 1.08997 * 109.47014 * 330.00657 * 1 2 3 30 30 H 1.08004 * 119.93792 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.96992 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.03301 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47163 * 60.00457 * 10 8 7 34 34 H 1.09009 * 109.46343 * 180.02562 * 10 8 7 35 35 H 1.08992 * 109.47093 * 299.99753 * 10 8 7 36 36 H 1.08995 * 109.47327 * 269.99812 * 14 13 11 37 37 H 1.09000 * 109.47030 * 29.99861 * 14 13 11 38 38 H 1.09004 * 109.46863 * 149.99728 * 14 13 11 39 39 H 1.08995 * 109.47389 * 180.02562 * 17 15 13 40 40 H 1.09000 * 109.47503 * 59.99495 * 17 15 13 41 41 H 1.09005 * 109.46833 * 299.99930 * 17 15 13 42 42 H 0.97002 * 119.99733 * 180.02562 * 21 20 18 43 43 H 1.08007 * 120.02610 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1959 0.0005 7 8 4.2658 -2.3718 0.0011 8 6 3.4941 -3.5687 -0.1180 9 1 2.6438 -3.3888 -0.7758 10 6 2.9898 -3.9898 1.2638 11 6 4.3526 -4.6646 -0.6950 12 8 5.5333 -4.4699 -0.8919 13 7 3.8083 -5.8612 -0.9922 14 6 2.3818 -6.0963 -0.7547 15 6 4.6429 -6.9268 -1.5526 16 1 5.6672 -6.5689 -1.6574 17 6 4.1013 -7.3301 -2.9255 18 6 4.6188 -8.1202 -0.6326 19 1 4.0394 -8.0882 0.2782 20 6 5.3357 -9.2532 -0.9542 21 7 6.0408 -9.2922 -2.0637 22 14 5.3053 -10.7326 0.1858 23 1 3.9096 -11.2195 0.3278 24 1 6.1514 -11.8127 -0.3823 25 1 5.8312 -10.3416 1.5184 26 6 2.1971 -1.1965 -0.0062 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0010 32 1 5.3552 0.0101 0.0005 33 1 2.3689 -3.1972 1.6811 34 1 2.4015 -4.9030 1.1730 35 1 3.8401 -4.1697 1.9216 36 1 2.2408 -6.4870 0.2530 37 1 1.8365 -5.1584 -0.8603 38 1 2.0069 -6.8183 -1.4801 39 1 4.7220 -8.1232 -3.3422 40 1 4.1187 -6.4670 -3.5909 41 1 3.0769 -7.6878 -2.8212 42 1 6.5449 -10.0894 -2.2902 43 1 1.6570 -2.1319 -0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:44 Heat of formation + Delta-G solvation = -45.293756 kcal Electronic energy + Delta-G solvation = -23514.373485 eV Core-core repulsion = 20139.253440 eV Total energy + Delta-G solvation = -3375.120045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53879 -39.10165 -37.42439 -35.35551 -33.38319 -32.77467 -31.48055 -29.97676 -29.03909 -27.04534 -26.38552 -25.27681 -24.46913 -22.64494 -21.56541 -20.75864 -18.57092 -17.96454 -16.77842 -16.22004 -16.11917 -15.65652 -15.44091 -15.12908 -14.55052 -14.27634 -14.19578 -13.76321 -13.45396 -13.27731 -13.04550 -12.80982 -12.56596 -12.42352 -12.17457 -12.00094 -11.70071 -11.60482 -11.49681 -11.44464 -11.08637 -10.90925 -10.82408 -10.75338 -10.73267 -10.28834 -10.18619 -9.22826 -8.99082 -8.87166 -8.45089 -8.16432 -7.67809 -6.09602 -4.18081 1.23299 1.38323 2.95347 3.22591 3.26600 3.31986 3.34288 3.68138 4.03558 4.37556 4.58793 4.72511 4.76481 4.90562 5.01087 5.06113 5.15007 5.21666 5.26409 5.38704 5.44271 5.50494 5.59352 5.61260 5.66571 5.69915 5.93895 5.98944 6.08385 6.25555 6.28234 6.35205 6.47691 6.69690 6.73502 6.77980 7.00551 7.31481 7.43283 7.51751 7.67490 7.97787 8.14732 8.42937 8.78544 8.95905 9.48348 10.95770 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.003440 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.847896 B = 8136.843275 C = 8359.057311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.167 4.167 4 C -0.077 4.077 5 C -0.159 4.159 6 C 0.142 3.858 7 O -0.283 6.283 8 C 0.067 3.933 9 H 0.091 0.909 10 C -0.181 4.181 11 C 0.509 3.491 12 O -0.529 6.529 13 N -0.587 5.587 14 C 0.081 3.919 15 C 0.259 3.741 16 H 0.064 0.936 17 C -0.148 4.148 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.215 4.215 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.012 0.988 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 16.322 3.946 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.095 4.095 5 C -0.177 4.177 6 C 0.095 3.905 7 O -0.195 6.195 8 C 0.007 3.993 9 H 0.109 0.891 10 C -0.238 4.238 11 C 0.293 3.707 12 O -0.405 6.405 13 N -0.320 5.320 14 C -0.063 4.063 15 C 0.160 3.840 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.234 4.234 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.488 16.219 3.733 20.223 hybrid contribution -0.303 -0.972 0.609 1.186 sum -11.791 15.247 4.341 19.757 Atomic orbital electron populations 1.20818 0.91129 1.02809 1.02463 1.19691 0.95896 0.92515 0.96773 1.20889 0.94208 0.97335 1.06046 1.20918 0.94072 0.97128 0.97409 1.20475 1.00675 0.89689 1.06883 1.19143 0.90545 0.86316 0.94459 1.86254 1.34855 1.11431 1.86942 1.22328 0.94127 0.84176 0.98644 0.89110 1.22444 1.02839 1.03024 0.95493 1.19818 0.88144 0.83184 0.79536 1.90690 1.15855 1.80805 1.53175 1.48158 1.09690 1.12452 1.61736 1.21732 0.82118 1.00539 1.01876 1.18985 0.91085 0.83368 0.90566 0.91778 1.22108 1.00374 1.00446 0.97689 1.21259 1.30274 0.98265 1.06787 0.92258 1.24895 0.94893 0.98598 0.95369 1.69869 1.30156 1.29177 1.23343 0.86535 0.77986 0.81830 0.80915 1.20220 1.21151 1.20215 1.21200 0.93068 0.98985 1.10127 0.90981 0.91458 0.91435 0.86187 0.85492 0.85104 0.91325 0.89414 0.90690 0.92715 0.93131 0.90439 0.88639 0.96898 0.95019 0.92563 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.05 -0.51 5.88 -104.64 -0.62 -1.13 16 3 C -0.17 -1.67 9.70 -39.56 -0.38 -2.06 16 4 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 5 C -0.16 -2.08 9.99 -39.43 -0.39 -2.47 16 6 C 0.14 2.07 6.60 -39.22 -0.26 1.81 16 7 O -0.28 -4.98 9.34 -39.30 -0.37 -5.35 16 8 C 0.07 1.09 1.83 -27.88 -0.05 1.04 16 9 H 0.09 1.25 5.30 -51.93 -0.28 0.97 16 10 C -0.18 -2.43 8.89 37.16 0.33 -2.10 16 11 C 0.51 10.88 7.10 -10.99 -0.08 10.80 16 12 O -0.53 -13.82 15.83 -14.30 -0.23 -14.04 16 13 N -0.59 -12.38 2.75 -175.26 -0.48 -12.86 16 14 C 0.08 1.29 8.16 59.85 0.49 1.77 16 15 C 0.26 6.60 2.64 -69.09 -0.18 6.42 16 16 H 0.06 1.91 6.90 -51.92 -0.36 1.55 16 17 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 18 C -0.53 -14.09 8.37 -34.44 -0.29 -14.38 16 19 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 22 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.22 -2.64 7.89 -39.43 -0.31 -2.95 16 27 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 34 H 0.09 1.07 5.12 -51.92 -0.27 0.81 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.82 7.02 -51.93 -0.36 0.45 16 37 H 0.05 0.62 6.08 -51.93 -0.32 0.30 16 38 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 39 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 1.41 5.43 -52.48 -0.29 1.12 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -32.29 344.08 -7.96 -40.25 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.13 Total: 1.81 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.54 Total: -6.47 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.14 Total: -37.24 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.59 Total: -19.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.29 -7.96 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.042 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds