Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38287 * 119.97463 * 2 1 4 4 C 1.38241 * 120.11319 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05613 * 0.02562 * 4 3 2 6 6 C 1.38714 * 119.94499 * 359.97438 * 5 4 3 7 7 O 1.35904 * 120.05562 * 180.02562 * 6 5 4 8 8 C 1.42909 * 116.99762 * 185.36258 * 7 6 5 9 9 H 1.08997 * 109.46774 * 35.32633 * 8 7 6 10 10 C 1.53001 * 109.46665 * 275.32661 * 8 7 6 11 11 C 1.50696 * 109.46780 * 155.32469 * 8 7 6 12 12 O 1.21277 * 120.00413 * 5.00408 * 11 8 7 13 13 N 1.34778 * 119.99983 * 184.99595 * 11 8 7 14 14 C 1.46506 * 119.99574 * 0.02562 * 13 11 8 15 15 C 1.46495 * 120.00436 * 180.02562 * 13 11 8 16 16 H 1.09009 * 109.46980 * 359.97438 * 15 13 11 17 17 C 1.52996 * 109.47298 * 240.00623 * 15 13 11 18 18 C 1.50700 * 109.47261 * 119.99940 * 15 13 11 19 19 H 1.07997 * 119.99912 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99982 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99752 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00078 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47018 * 59.99850 * 22 20 18 24 24 H 1.48500 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47011 * 300.00136 * 22 20 18 26 26 C 1.38127 * 119.97195 * 180.29480 * 2 1 3 27 27 H 1.09007 * 109.46692 * 90.00072 * 1 2 3 28 28 H 1.09000 * 109.47333 * 209.99713 * 1 2 3 29 29 H 1.08997 * 109.47014 * 330.00657 * 1 2 3 30 30 H 1.08004 * 119.93792 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.96992 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.03301 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47163 * 60.00457 * 10 8 7 34 34 H 1.09009 * 109.46343 * 180.02562 * 10 8 7 35 35 H 1.08992 * 109.47093 * 299.99753 * 10 8 7 36 36 H 1.08995 * 109.47327 * 269.99812 * 14 13 11 37 37 H 1.09000 * 109.47030 * 29.99861 * 14 13 11 38 38 H 1.09004 * 109.46863 * 149.99728 * 14 13 11 39 39 H 1.08995 * 109.47389 * 180.02562 * 17 15 13 40 40 H 1.09000 * 109.47503 * 59.99495 * 17 15 13 41 41 H 1.09005 * 109.46833 * 299.99930 * 17 15 13 42 42 H 0.97002 * 119.99733 * 180.02562 * 21 20 18 43 43 H 1.08007 * 120.02610 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1959 0.0005 7 8 4.2658 -2.3718 0.0011 8 6 3.4941 -3.5687 -0.1180 9 1 2.6438 -3.3888 -0.7758 10 6 2.9898 -3.9898 1.2638 11 6 4.3526 -4.6646 -0.6950 12 8 5.5333 -4.4699 -0.8919 13 7 3.8083 -5.8612 -0.9922 14 6 2.3818 -6.0963 -0.7547 15 6 4.6429 -6.9268 -1.5526 16 1 5.6672 -6.5689 -1.6574 17 6 4.1013 -7.3301 -2.9255 18 6 4.6188 -8.1202 -0.6326 19 1 4.0394 -8.0882 0.2782 20 6 5.3357 -9.2532 -0.9542 21 7 6.0408 -9.2922 -2.0637 22 14 5.3053 -10.7326 0.1858 23 1 3.9096 -11.2195 0.3278 24 1 6.1514 -11.8127 -0.3823 25 1 5.8312 -10.3416 1.5184 26 6 2.1971 -1.1965 -0.0062 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0010 32 1 5.3552 0.0101 0.0005 33 1 2.3689 -3.1972 1.6811 34 1 2.4015 -4.9030 1.1730 35 1 3.8401 -4.1697 1.9216 36 1 2.2408 -6.4870 0.2530 37 1 1.8365 -5.1584 -0.8603 38 1 2.0069 -6.8183 -1.4801 39 1 4.7220 -8.1232 -3.3422 40 1 4.1187 -6.4670 -3.5909 41 1 3.0769 -7.6878 -2.8212 42 1 6.5449 -10.0894 -2.2902 43 1 1.6570 -2.1319 -0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = -63.970796 kcal Electronic energy + Delta-G solvation = -23515.183382 eV Core-core repulsion = 20139.253440 eV Total energy + Delta-G solvation = -3375.929942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74632 -40.48649 -38.55207 -37.16984 -35.09081 -33.83809 -32.81639 -31.00493 -30.67166 -27.85587 -27.73156 -27.32275 -25.76587 -23.83210 -22.51171 -22.23691 -20.17515 -19.08341 -18.57015 -17.72755 -17.51682 -16.90207 -16.67498 -16.56870 -16.03271 -15.77483 -15.16340 -14.91780 -14.55686 -14.50250 -14.24494 -14.08423 -13.90426 -13.58349 -13.38197 -13.27574 -13.00828 -12.95627 -12.83702 -12.77370 -12.65474 -12.48282 -12.31336 -12.18574 -12.13168 -11.88750 -11.71868 -11.21284 -10.67711 -10.49248 -9.74685 -9.42358 -9.13004 -8.15589 -6.32690 0.38085 0.48223 1.41317 1.44404 1.51127 1.60151 1.69715 2.39631 2.66051 2.81076 3.12612 3.42391 3.62164 3.84968 3.87294 3.97924 4.19255 4.33233 4.39768 4.44775 4.54936 4.59188 4.66093 4.73402 4.77624 4.82780 4.86081 4.89457 4.94750 4.97034 5.02449 5.14277 5.31607 5.37742 5.43101 5.51068 5.56143 5.63531 5.66687 5.89277 6.00431 6.12929 6.41663 6.70439 6.74996 7.23055 7.41281 8.88940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.003440 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.847896 B = 8136.843275 C = 8359.057311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.164 4.164 4 C -0.075 4.075 5 C -0.184 4.184 6 C 0.109 3.891 7 O -0.319 6.319 8 C 0.080 3.920 9 H 0.122 0.878 10 C -0.172 4.172 11 C 0.495 3.505 12 O -0.594 6.594 13 N -0.590 5.590 14 C 0.072 3.928 15 C 0.262 3.738 16 H 0.005 0.995 17 C -0.133 4.133 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.285 1.285 25 H -0.278 1.278 26 C -0.220 4.220 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.265 0.735 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 17.409 5.127 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.181 4.181 4 C -0.093 4.093 5 C -0.202 4.202 6 C 0.064 3.936 7 O -0.233 6.233 8 C 0.021 3.979 9 H 0.139 0.861 10 C -0.229 4.229 11 C 0.282 3.718 12 O -0.475 6.475 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.160 3.840 16 H 0.023 0.977 17 C -0.192 4.192 18 C -0.577 4.577 19 H 0.083 0.917 20 C -0.186 4.186 21 N -0.558 5.558 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.211 1.211 25 H -0.204 1.204 26 C -0.238 4.238 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.399 17.319 4.925 23.692 hybrid contribution 0.892 -1.168 0.219 1.486 sum -14.508 16.150 5.143 22.310 Atomic orbital electron populations 1.20892 0.88639 1.04133 1.03425 1.20127 0.97703 0.91966 0.95282 1.21328 0.93999 0.98599 1.04219 1.21243 0.94789 0.97062 0.96233 1.20668 1.00610 0.90623 1.08334 1.19446 0.91854 0.85408 0.96899 1.86197 1.36585 1.12603 1.87912 1.22229 0.93038 0.82341 1.00302 0.86108 1.22437 1.02432 1.04774 0.93303 1.20867 0.88056 0.84259 0.78573 1.90647 1.18956 1.82062 1.55800 1.48127 1.11525 1.11493 1.60968 1.22095 0.78981 1.03155 1.02713 1.18587 0.89402 0.84154 0.91857 0.97736 1.21892 1.00878 0.99795 0.96620 1.21541 1.30384 0.98690 1.07116 0.91671 1.25770 0.94447 1.01567 0.96787 1.70026 1.30838 1.29887 1.25022 0.85481 0.78766 0.78161 0.78441 1.18300 1.21082 1.20373 1.21384 0.91938 1.00490 1.10020 0.90035 0.90584 0.89792 0.83178 0.82939 0.86226 0.88410 0.87694 0.92969 0.91295 0.88709 0.90343 0.91272 0.96224 0.92736 0.92619 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 2 C -0.05 -0.90 5.88 -19.88 -0.12 -1.01 16 3 C -0.16 -2.73 9.70 22.28 0.22 -2.52 16 4 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 5 C -0.18 -4.86 9.99 22.37 0.22 -4.64 16 6 C 0.11 3.16 6.60 22.51 0.15 3.31 16 7 O -0.32 -11.57 9.34 -73.48 -0.69 -12.26 16 8 C 0.08 2.55 1.83 29.85 0.05 2.60 16 9 H 0.12 3.02 5.30 -2.39 -0.01 3.01 16 10 C -0.17 -4.32 8.89 71.98 0.64 -3.68 16 11 C 0.50 21.84 7.10 87.66 0.62 22.46 16 12 O -0.59 -33.27 15.83 15.97 0.25 -33.02 16 13 N -0.59 -24.99 2.75 -826.79 -2.28 -27.27 16 14 C 0.07 2.10 8.16 127.77 1.04 3.15 16 15 C 0.26 13.79 2.64 44.25 0.12 13.90 16 16 H 0.00 0.30 6.90 -2.38 -0.02 0.28 16 17 C -0.13 -6.43 8.95 71.98 0.64 -5.79 16 18 C -0.54 -29.20 8.37 25.60 0.21 -28.99 16 19 H 0.07 3.37 7.65 -2.91 -0.02 3.34 16 20 C 0.01 0.76 5.30 84.65 0.45 1.21 16 21 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 22 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 C -0.22 -4.87 7.89 22.37 0.18 -4.70 16 27 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.10 1.89 6.91 -2.39 -0.02 1.87 16 34 H 0.10 2.22 5.12 -2.38 -0.01 2.21 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.84 7.02 -2.39 -0.02 1.82 16 37 H 0.09 1.92 6.08 -2.39 -0.01 1.90 16 38 H 0.08 2.29 6.43 -2.38 -0.02 2.28 16 39 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 2.32 6.66 -2.38 -0.02 2.30 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.14 2.61 5.43 -2.91 -0.02 2.59 16 Total: -1.00 -76.17 344.08 5.94 -70.23 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.01 Total: 17.02 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 5.37 Total: -6.45 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.03 Total: -80.43 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.43 Total: -45.28 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.17 5.94 -70.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.260 kcal (2) G-P(sol) polarization free energy of solvation -76.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds