Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.96877 * 2 1 4 4 C 1.38248 * 120.11188 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05352 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.02914 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47006 * 300.02181 * 6 5 4 8 8 C 1.53004 * 109.46872 * 60.01968 * 6 5 4 9 9 C 1.38715 * 119.94424 * 359.97438 * 5 4 3 10 10 O 1.35903 * 120.05514 * 179.72952 * 9 5 4 11 11 C 1.42895 * 117.00049 * 179.97438 * 10 9 5 12 12 C 1.53003 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47121 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00181 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00139 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00013 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99928 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47104 * 90.00234 * 20 18 16 22 22 H 1.48506 * 109.47068 * 209.99782 * 20 18 16 23 23 H 1.48497 * 109.47165 * 329.99992 * 20 18 16 24 24 C 1.38119 * 119.97661 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47231 * 89.99391 * 1 2 3 26 26 H 1.09001 * 109.46491 * 209.99383 * 1 2 3 27 27 H 1.08996 * 109.47267 * 329.99474 * 1 2 3 28 28 H 1.08000 * 119.94409 * 0.02955 * 3 2 1 29 29 H 1.07993 * 119.97213 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47044 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47015 * 299.99903 * 7 6 5 32 32 H 1.09001 * 109.47661 * 59.99837 * 7 6 5 33 33 H 1.09005 * 109.47503 * 179.97438 * 7 6 5 34 34 H 1.09008 * 109.46908 * 60.00149 * 8 6 5 35 35 H 1.09000 * 109.46968 * 179.97438 * 8 6 5 36 36 H 1.08995 * 109.47269 * 300.00335 * 8 6 5 37 37 H 1.09000 * 109.47202 * 299.99846 * 11 10 9 38 38 H 1.08999 * 109.47281 * 59.99918 * 11 10 9 39 39 H 1.09000 * 109.47280 * 300.00187 * 12 11 10 40 40 H 1.08996 * 109.47063 * 60.00458 * 12 11 10 41 41 H 0.97003 * 120.00196 * 359.97438 * 15 13 12 42 42 H 0.96993 * 119.99765 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.02414 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 -0.0005 5 6 4.2752 0.0073 -0.0005 6 6 5.7823 0.0117 -0.0017 7 6 6.2891 0.7343 -1.2513 8 6 6.2911 0.7346 1.2471 9 6 3.5846 -1.1957 0.0005 10 8 4.2659 -2.3716 -0.0050 11 6 3.4894 -3.5712 -0.0029 12 6 4.4232 -4.7832 -0.0105 13 6 3.6044 -6.0483 -0.0090 14 8 2.3930 -5.9867 -0.0020 15 7 4.2180 -7.2482 -0.0143 16 6 3.4730 -8.3992 -0.0124 17 1 2.3944 -8.3443 -0.0070 18 6 4.1057 -9.6363 -0.0174 19 7 5.4181 -9.7031 -0.0234 20 14 3.0906 -11.2044 -0.0155 21 1 2.8154 -11.6176 -1.4150 22 1 3.8427 -12.2801 0.6793 23 1 1.8070 -10.9623 0.6908 24 6 2.1971 -1.1964 -0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6564 2.1325 0.0005 29 1 4.1175 2.1383 -0.0010 30 1 6.1486 -1.0149 -0.0020 31 1 5.9266 0.2193 -2.1410 32 1 5.9228 1.7609 -1.2512 33 1 7.3792 0.7380 -1.2520 34 1 5.9299 0.2197 2.1375 35 1 7.3811 0.7374 1.2465 36 1 5.9247 1.7611 1.2473 37 1 2.8653 -3.5986 0.8903 38 1 2.8559 -3.5956 -0.8896 39 1 5.0470 -4.7557 -0.9040 40 1 5.0569 -4.7591 0.8760 41 1 5.1867 -7.2976 -0.0196 42 1 5.8597 -10.5667 -0.0273 43 1 1.6571 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120860935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -81.894356 kcal Electronic energy + Delta-G solvation = -22601.804270 eV Core-core repulsion = 19225.097104 eV Total energy + Delta-G solvation = -3376.707166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37444 -38.44753 -37.49326 -35.80610 -34.08201 -31.86219 -31.40057 -31.00835 -29.62013 -27.19551 -26.88560 -25.44726 -23.72051 -22.35863 -21.62050 -20.03184 -19.10636 -17.92504 -17.53667 -16.39266 -16.00489 -15.69531 -15.46071 -14.55305 -14.26038 -14.23777 -14.07569 -13.90890 -13.80798 -13.55505 -13.36226 -13.29422 -12.47550 -12.39140 -12.25308 -12.12977 -12.02182 -11.61961 -11.54395 -11.46395 -11.21612 -11.13496 -11.04981 -10.64993 -10.45549 -10.43438 -10.38939 -10.27150 -9.58715 -8.69301 -8.53451 -8.05229 -7.99709 -6.47897 -3.89392 1.30784 1.48527 3.13971 3.22238 3.25409 3.32479 3.72373 3.81346 4.15153 4.59293 4.72854 4.87587 4.98124 5.03104 5.16429 5.17478 5.18134 5.27391 5.29268 5.41045 5.41952 5.51877 5.53987 5.56657 5.68464 5.74394 5.76429 5.77633 5.79139 5.94813 6.08501 6.16781 6.19040 6.19854 6.20935 6.31625 6.41467 6.56782 6.60425 6.86285 7.49507 7.56438 7.97841 8.51504 9.09680 9.45555 9.95400 10.69453 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.003025 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.951017 B = 9254.795239 C =10351.079143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.078 4.078 5 C -0.118 4.118 6 C -0.052 4.052 7 C -0.141 4.141 8 C -0.141 4.141 9 C 0.145 3.855 10 O -0.316 6.316 11 C 0.081 3.919 12 C -0.128 4.128 13 C 0.442 3.558 14 O -0.600 6.600 15 N -0.555 5.555 16 C -0.304 4.304 17 H 0.104 0.896 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.206 4.206 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.395 0.605 42 H 0.273 0.727 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 21.279 0.013 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.096 4.096 5 C -0.119 4.119 6 C -0.071 4.071 7 C -0.198 4.198 8 C -0.198 4.198 9 C 0.099 3.901 10 O -0.230 6.230 11 C 0.006 3.994 12 C -0.169 4.169 13 C 0.228 3.772 14 O -0.486 6.486 15 N -0.190 5.190 16 C -0.433 4.433 17 H 0.122 0.878 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.758 3.242 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.225 4.225 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.228 0.772 42 H 0.083 0.917 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.484 21.076 0.023 21.082 hybrid contribution -0.062 -1.010 -0.019 1.012 sum -0.546 20.067 0.004 20.074 Atomic orbital electron populations 1.20813 0.91223 1.02800 1.02409 1.19686 0.95910 0.92513 0.97117 1.20842 0.94049 0.97251 1.06019 1.20722 0.93757 0.96755 0.98340 1.19174 0.95602 0.90318 1.06756 1.19952 0.90433 1.01325 0.95345 1.21838 1.00574 1.00033 0.97374 1.21841 1.00568 1.00036 0.97381 1.18802 0.90210 0.85842 0.95290 1.85970 1.36436 1.12516 1.88086 1.22468 0.93474 0.80779 1.02653 1.21329 0.98947 0.92306 1.04323 1.19554 0.88312 0.84414 0.84932 1.90527 1.14182 1.87108 1.56827 1.41848 1.09538 1.04368 1.63282 1.19736 0.92960 0.82650 1.47985 0.87793 1.25300 0.95906 0.99589 0.97005 1.69613 1.07679 1.26673 1.49907 0.85835 0.79447 0.80419 0.78470 1.20309 1.20830 1.19342 1.21263 0.93106 0.99259 1.08884 0.91064 0.91346 0.91570 0.86341 0.85836 0.89470 0.92609 0.92851 0.92556 0.92615 0.92556 0.92843 0.91322 0.91328 0.89395 0.89389 0.77181 0.91707 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.05 -0.63 5.88 -104.65 -0.62 -1.24 16 3 C -0.16 -1.78 9.70 -39.56 -0.38 -2.17 16 4 C -0.08 -0.85 8.71 -39.60 -0.35 -1.20 16 5 C -0.12 -1.49 4.79 -104.47 -0.50 -1.99 16 6 C -0.05 -0.58 3.06 -91.77 -0.28 -0.86 16 7 C -0.14 -1.34 9.01 37.15 0.33 -1.01 16 8 C -0.14 -1.34 9.01 37.16 0.33 -1.01 16 9 C 0.14 2.12 6.66 -39.22 -0.26 1.86 16 10 O -0.32 -4.99 8.90 -19.43 -0.17 -5.16 16 11 C 0.08 1.37 4.03 37.16 0.15 1.52 16 12 C -0.13 -2.29 6.07 -27.88 -0.17 -2.46 16 13 C 0.44 10.35 7.78 -10.99 -0.09 10.26 16 14 O -0.60 -15.97 15.56 5.54 0.09 -15.88 16 15 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 20 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.21 -2.90 8.69 -39.44 -0.34 -3.25 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.07 7.10 -52.49 -0.37 0.70 16 30 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.45 7.39 -51.93 -0.38 0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.45 7.39 -51.93 -0.38 0.06 16 37 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 38 H 0.07 1.19 7.61 -51.93 -0.39 0.79 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.13 1.90 6.30 -52.49 -0.33 1.57 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -30.36 357.25 -7.79 -38.15 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.68 Total: 9.62 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.04 Total: -10.31 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.67 Total: -37.60 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.09 Total: -21.05 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.36 -7.79 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120860935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.747 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds