Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.96877 * 2 1 4 4 C 1.38248 * 120.11188 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05352 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.02914 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47006 * 300.02181 * 6 5 4 8 8 C 1.53004 * 109.46872 * 60.01968 * 6 5 4 9 9 C 1.38715 * 119.94424 * 359.97438 * 5 4 3 10 10 O 1.35903 * 120.05514 * 179.72952 * 9 5 4 11 11 C 1.42895 * 117.00049 * 179.97438 * 10 9 5 12 12 C 1.53003 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47121 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00181 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00139 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00013 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99928 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47104 * 90.00234 * 20 18 16 22 22 H 1.48506 * 109.47068 * 209.99782 * 20 18 16 23 23 H 1.48497 * 109.47165 * 329.99992 * 20 18 16 24 24 C 1.38119 * 119.97661 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47231 * 89.99391 * 1 2 3 26 26 H 1.09001 * 109.46491 * 209.99383 * 1 2 3 27 27 H 1.08996 * 109.47267 * 329.99474 * 1 2 3 28 28 H 1.08000 * 119.94409 * 0.02955 * 3 2 1 29 29 H 1.07993 * 119.97213 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47044 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47015 * 299.99903 * 7 6 5 32 32 H 1.09001 * 109.47661 * 59.99837 * 7 6 5 33 33 H 1.09005 * 109.47503 * 179.97438 * 7 6 5 34 34 H 1.09008 * 109.46908 * 60.00149 * 8 6 5 35 35 H 1.09000 * 109.46968 * 179.97438 * 8 6 5 36 36 H 1.08995 * 109.47269 * 300.00335 * 8 6 5 37 37 H 1.09000 * 109.47202 * 299.99846 * 11 10 9 38 38 H 1.08999 * 109.47281 * 59.99918 * 11 10 9 39 39 H 1.09000 * 109.47280 * 300.00187 * 12 11 10 40 40 H 1.08996 * 109.47063 * 60.00458 * 12 11 10 41 41 H 0.97003 * 120.00196 * 359.97438 * 15 13 12 42 42 H 0.96993 * 119.99765 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.02414 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2015 -0.0005 5 6 4.2752 0.0073 -0.0005 6 6 5.7823 0.0117 -0.0017 7 6 6.2891 0.7343 -1.2513 8 6 6.2911 0.7346 1.2471 9 6 3.5846 -1.1957 0.0005 10 8 4.2659 -2.3716 -0.0050 11 6 3.4894 -3.5712 -0.0029 12 6 4.4232 -4.7832 -0.0105 13 6 3.6044 -6.0483 -0.0090 14 8 2.3930 -5.9867 -0.0020 15 7 4.2180 -7.2482 -0.0143 16 6 3.4730 -8.3992 -0.0124 17 1 2.3944 -8.3443 -0.0070 18 6 4.1057 -9.6363 -0.0174 19 7 5.4181 -9.7031 -0.0234 20 14 3.0906 -11.2044 -0.0155 21 1 2.8154 -11.6176 -1.4150 22 1 3.8427 -12.2801 0.6793 23 1 1.8070 -10.9623 0.6908 24 6 2.1971 -1.1964 -0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6564 2.1325 0.0005 29 1 4.1175 2.1383 -0.0010 30 1 6.1486 -1.0149 -0.0020 31 1 5.9266 0.2193 -2.1410 32 1 5.9228 1.7609 -1.2512 33 1 7.3792 0.7380 -1.2520 34 1 5.9299 0.2197 2.1375 35 1 7.3811 0.7374 1.2465 36 1 5.9247 1.7611 1.2473 37 1 2.8653 -3.5986 0.8903 38 1 2.8559 -3.5956 -0.8896 39 1 5.0470 -4.7557 -0.9040 40 1 5.0569 -4.7591 0.8760 41 1 5.1867 -7.2976 -0.0196 42 1 5.8597 -10.5667 -0.0273 43 1 1.6571 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120860935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -98.711318 kcal Electronic energy + Delta-G solvation = -22602.533508 eV Core-core repulsion = 19225.097104 eV Total energy + Delta-G solvation = -3377.436405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43100 -40.24733 -38.70888 -36.65637 -36.10041 -33.50644 -32.91431 -32.18116 -30.70321 -27.92817 -27.90828 -27.17239 -25.14419 -23.35958 -22.70635 -21.22179 -20.71020 -19.90115 -18.77162 -17.58745 -17.36097 -17.19126 -16.58802 -16.38858 -15.86990 -15.72476 -15.11587 -14.97552 -14.67194 -14.62854 -14.46077 -14.31380 -14.09941 -13.55128 -13.54828 -13.10729 -13.04139 -12.92687 -12.89725 -12.52793 -12.46853 -12.44809 -12.37176 -12.12941 -11.95871 -11.63251 -11.57259 -11.48348 -11.41133 -10.51663 -10.09155 -9.64838 -9.00543 -8.51732 -6.01704 0.36679 0.50545 1.35543 1.40618 1.53422 1.94208 1.98815 2.31716 2.77749 3.15179 3.32395 3.69120 3.74913 3.91162 3.94941 4.04391 4.16244 4.20186 4.28051 4.37994 4.47509 4.55344 4.56914 4.67985 4.72267 4.76159 4.79434 4.85887 4.88135 4.93785 5.01862 5.03205 5.19341 5.28132 5.33863 5.37059 5.44449 5.49306 5.65982 5.67571 5.92258 5.92448 6.42277 6.50384 7.04429 7.45885 7.99455 8.65497 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.003025 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.951017 B = 9254.795239 C =10351.079143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.075 4.075 5 C -0.123 4.123 6 C -0.054 4.054 7 C -0.137 4.137 8 C -0.137 4.137 9 C 0.111 3.889 10 O -0.321 6.321 11 C 0.095 3.905 12 C -0.115 4.115 13 C 0.441 3.559 14 O -0.635 6.635 15 N -0.564 5.564 16 C -0.340 4.340 17 H 0.082 0.918 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.226 4.226 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 23.228 -0.009 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.063 4.063 3 C -0.175 4.175 4 C -0.093 4.093 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.194 4.194 8 C -0.194 4.194 9 C 0.066 3.934 10 O -0.235 6.235 11 C 0.019 3.981 12 C -0.155 4.155 13 C 0.229 3.771 14 O -0.524 6.524 15 N -0.200 5.200 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.211 4.211 19 N -0.557 5.557 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.245 4.245 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.014 23.043 -0.001 23.043 hybrid contribution -0.213 -1.489 -0.013 1.504 sum -0.227 21.554 -0.014 21.555 Atomic orbital electron populations 1.20856 0.89615 1.03520 1.03127 1.20022 0.97273 0.92269 0.96690 1.21245 0.94294 0.97890 1.04075 1.21093 0.94053 0.97152 0.96984 1.19484 0.96556 0.90121 1.06231 1.19981 0.89564 1.00671 0.97055 1.21808 1.01337 1.00453 0.95781 1.21811 1.01329 1.00456 0.95788 1.19152 0.90761 0.85930 0.97583 1.85926 1.36217 1.12536 1.88798 1.22143 0.92966 0.81379 1.01599 1.21189 0.98443 0.89621 1.06248 1.20434 0.88300 0.85532 0.82855 1.90499 1.16159 1.87853 1.57897 1.41904 1.09616 1.04526 1.63939 1.19726 0.92409 0.84320 1.50453 0.90022 1.26101 0.97068 1.02059 0.95853 1.69672 1.08680 1.27815 1.49559 0.84897 0.77848 0.76652 0.78765 1.19496 1.19404 1.19635 1.21313 0.93182 0.99707 1.10289 0.90271 0.92142 0.89353 0.83236 0.82831 0.91709 0.93921 0.91188 0.91356 0.93928 0.91357 0.91179 0.92494 0.92488 0.87342 0.87341 0.76689 0.91074 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.06 -1.45 5.88 -19.88 -0.12 -1.57 16 3 C -0.16 -3.01 9.70 22.28 0.22 -2.79 16 4 C -0.08 -1.45 8.71 22.25 0.19 -1.26 16 5 C -0.12 -3.00 4.79 -19.77 -0.09 -3.10 16 6 C -0.05 -1.14 3.06 -11.54 -0.04 -1.18 16 7 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 8 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 9 C 0.11 3.31 6.66 22.51 0.15 3.46 16 10 O -0.32 -10.41 8.90 -92.45 -0.82 -11.23 16 11 C 0.09 3.32 4.03 71.98 0.29 3.61 16 12 C -0.11 -4.13 6.07 29.85 0.18 -3.95 16 13 C 0.44 21.24 7.78 87.66 0.68 21.92 16 14 O -0.64 -35.22 15.56 -3.08 -0.05 -35.27 16 15 N -0.56 -29.20 5.29 -306.98 -1.62 -30.82 16 16 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 19 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 20 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.23 -6.56 8.69 22.36 0.19 -6.36 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 27 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 28 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.15 2.01 7.10 -2.91 -0.02 1.99 16 30 H 0.06 1.64 6.99 -2.39 -0.02 1.63 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.95 7.39 -2.39 -0.02 0.93 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.95 7.39 -2.39 -0.02 0.93 16 37 H 0.06 2.09 7.63 -2.39 -0.02 2.07 16 38 H 0.06 2.09 7.61 -2.39 -0.02 2.08 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.12 3.62 6.30 -2.91 -0.02 3.60 16 Total: -1.00 -66.72 357.25 5.04 -61.68 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.27 Total: 34.58 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.95 Total: -14.50 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.34 Total: -79.91 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.87 Total: -46.50 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.72 5.04 -61.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120860935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.034 kcal (2) G-P(sol) polarization free energy of solvation -66.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds