Wall clock time and date at job start Tue Mar 31 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38160 * 120.02930 * 2 1 4 4 C 1.38244 * 120.05457 * 179.97438 * 3 2 1 5 5 C 1.38283 * 120.11411 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.97557 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46646 * 299.99627 * 6 5 4 8 8 C 1.52996 * 109.47123 * 59.99532 * 6 5 4 9 9 C 1.38126 * 120.05502 * 359.76614 * 5 4 3 10 10 C 1.38711 * 120.02457 * 179.97438 * 2 1 3 11 11 O 1.35896 * 120.05641 * 0.02562 * 10 2 1 12 12 C 1.42896 * 116.99988 * 174.79414 * 11 10 2 13 13 H 1.08999 * 109.47126 * 325.00040 * 12 11 10 14 14 C 1.52994 * 109.47816 * 85.00398 * 12 11 10 15 15 C 1.50707 * 109.47249 * 205.00711 * 12 11 10 16 16 O 1.21292 * 119.99629 * 359.97438 * 15 12 11 17 17 N 1.34774 * 120.00187 * 179.97438 * 15 12 11 18 18 C 1.37097 * 119.99899 * 179.97438 * 17 15 12 19 19 H 1.08001 * 120.00074 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00136 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99594 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47319 * 59.99884 * 22 20 18 24 24 H 1.48501 * 109.47284 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46979 * 299.99655 * 22 20 18 26 26 H 1.09001 * 109.46716 * 270.02273 * 1 2 3 27 27 H 1.09004 * 109.46878 * 30.01469 * 1 2 3 28 28 H 1.09002 * 109.47347 * 150.01703 * 1 2 3 29 29 H 1.08004 * 119.97537 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.94198 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47338 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47225 * 60.00217 * 7 6 5 33 33 H 1.08997 * 109.47078 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47778 * 300.00242 * 7 6 5 35 35 H 1.09001 * 109.46850 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47333 * 300.00102 * 8 6 5 37 37 H 1.08997 * 109.47382 * 60.00495 * 8 6 5 38 38 H 1.07994 * 120.02936 * 180.27843 * 9 5 4 39 39 H 1.09000 * 109.46788 * 300.00462 * 14 12 11 40 40 H 1.09004 * 109.46659 * 59.99866 * 14 12 11 41 41 H 1.08994 * 109.47793 * 179.97438 * 14 12 11 42 42 H 0.96995 * 120.00092 * 359.72493 * 17 15 12 43 43 H 0.97005 * 119.99742 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2752 0.0009 0.0016 6 6 5.7822 0.0052 0.0028 7 6 6.2910 0.7273 -1.2465 8 6 6.2892 0.7285 1.2520 9 6 3.5887 -1.1977 0.0070 10 6 2.2011 -1.2010 0.0005 11 8 1.5233 -2.3788 0.0005 12 6 2.2988 -3.5736 -0.1144 13 1 3.1538 -3.3905 -0.7652 14 6 2.7931 -3.9961 1.2704 15 6 1.4475 -4.6706 -0.7002 16 8 0.2904 -4.4509 -0.9903 17 7 1.9719 -5.8956 -0.9019 18 6 1.1974 -6.8937 -1.4343 19 1 0.1671 -6.6981 -1.6925 20 6 1.7378 -8.1569 -1.6417 21 7 2.9916 -8.3946 -1.3279 22 14 0.6827 -9.5165 -2.3678 23 1 0.2030 -9.1065 -3.7120 24 1 1.4887 -10.7580 -2.4878 25 1 -0.4822 -9.7660 -1.4812 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6585 2.1315 0.0004 30 1 4.1196 2.1329 0.0010 31 1 6.1485 -1.0214 0.0031 32 1 5.9247 1.7539 -1.2473 33 1 7.3810 0.7308 -1.2455 34 1 5.9298 0.2121 -2.1365 35 1 7.3792 0.7320 1.2526 36 1 5.9229 1.7551 1.2512 37 1 5.9267 0.2141 2.1420 38 1 4.1313 -2.1313 0.0124 39 1 3.4088 -3.2027 1.6941 40 1 1.9380 -4.1792 1.9211 41 1 3.3842 -4.9077 1.1828 42 1 2.8983 -6.0702 -0.6736 43 1 3.3688 -9.2766 -1.4723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126736130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:47 Heat of formation + Delta-G solvation = -72.912425 kcal Electronic energy + Delta-G solvation = -23259.171989 eV Core-core repulsion = 19882.854309 eV Total energy + Delta-G solvation = -3376.317681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39349 -38.64887 -37.29670 -35.43169 -33.99066 -32.08907 -31.47932 -30.63836 -29.75947 -27.28519 -26.41347 -25.35532 -23.91649 -22.45700 -22.06631 -20.04593 -19.24697 -18.09462 -17.22820 -16.38414 -15.73778 -15.49558 -15.18956 -14.76358 -14.39440 -14.16565 -13.95904 -13.81681 -13.50144 -13.35626 -13.09694 -12.87907 -12.61418 -12.42451 -12.23764 -12.02873 -11.79398 -11.71377 -11.61233 -11.38440 -11.30007 -11.16749 -11.06339 -10.78147 -10.59035 -10.47710 -10.41904 -10.27225 -9.57606 -8.64171 -8.41155 -8.05824 -7.83417 -6.48837 -3.90299 1.39980 1.58138 3.16198 3.22540 3.24278 3.38148 3.75528 3.83298 4.15968 4.53275 4.70873 4.82846 4.96620 5.06609 5.10265 5.13340 5.20316 5.26828 5.34910 5.44694 5.46485 5.49738 5.61755 5.66672 5.72939 5.77662 5.80488 5.85000 5.90446 5.96401 6.02598 6.05306 6.09525 6.17321 6.39865 6.41870 6.48168 6.64519 6.69768 6.95350 7.48904 7.68731 7.97097 8.51496 9.09250 9.42032 9.92831 10.68497 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003673 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.813231 B = 7621.834726 C = 8528.069014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.158 4.158 5 C -0.044 4.044 6 C -0.058 4.058 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.208 4.208 10 C 0.142 3.858 11 O -0.277 6.277 12 C 0.075 3.925 13 H 0.083 0.917 14 C -0.172 4.172 15 C 0.444 3.556 16 O -0.574 6.574 17 N -0.553 5.553 18 C -0.302 4.302 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.899 5.899 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.130 0.870 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.393 0.607 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 17.010 4.446 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.176 4.176 5 C -0.045 4.045 6 C -0.077 4.077 7 C -0.200 4.200 8 C -0.199 4.199 9 C -0.227 4.227 10 C 0.095 3.905 11 O -0.189 6.189 12 C 0.015 3.985 13 H 0.101 0.899 14 C -0.230 4.230 15 C 0.229 3.771 16 O -0.457 6.457 17 N -0.190 5.190 18 C -0.431 4.431 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.540 5.540 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.227 0.773 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.378 16.919 4.245 18.573 hybrid contribution 0.427 -0.939 -0.213 1.054 sum 6.805 15.980 4.032 17.830 Atomic orbital electron populations 1.20614 0.90575 1.02966 1.02122 1.19265 0.96613 0.90285 1.06240 1.20788 0.93927 0.96551 0.98853 1.20735 0.93824 0.97302 1.05765 1.19567 0.94907 0.92512 0.97465 1.20138 0.90994 1.00698 0.95861 1.21844 1.00555 1.00467 0.97151 1.21836 1.00553 1.00451 0.97083 1.21234 0.93072 0.98883 1.09476 1.18968 0.90328 0.86287 0.94919 1.86231 1.34742 1.11269 1.86623 1.22216 0.94107 0.84340 0.97860 0.89912 1.22322 1.02275 1.02280 0.96128 1.19339 0.88475 0.83592 0.85730 1.90555 1.17678 1.81676 1.55803 1.41719 1.13859 1.07934 1.55517 1.19681 0.96772 0.88742 1.37940 0.87766 1.25275 0.96291 0.98581 0.97522 1.69602 1.12814 1.23810 1.47781 0.85880 0.79273 0.79271 0.79612 1.19788 1.20876 1.19771 0.91683 0.92149 0.90422 0.85809 0.86432 0.90456 0.92479 0.92487 0.92423 0.92505 0.92483 0.92508 0.85246 0.91832 0.91029 0.90205 0.77300 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.79 36.01 0.35 -1.12 16 2 C -0.12 -1.83 5.89 -104.47 -0.62 -2.45 16 3 C -0.08 -1.02 9.70 -39.61 -0.38 -1.41 16 4 C -0.16 -1.83 8.71 -39.56 -0.34 -2.18 16 5 C -0.04 -0.55 4.78 -104.65 -0.50 -1.05 16 6 C -0.06 -0.58 3.09 -91.77 -0.28 -0.87 16 7 C -0.14 -1.27 9.01 37.16 0.33 -0.93 16 8 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 9 C -0.21 -3.01 7.87 -39.43 -0.31 -3.32 16 10 C 0.14 2.35 6.57 -39.21 -0.26 2.09 16 11 O -0.28 -5.43 8.38 -39.32 -0.33 -5.76 16 12 C 0.07 1.43 2.64 -27.88 -0.07 1.35 16 13 H 0.08 1.42 6.31 -51.93 -0.33 1.10 16 14 C -0.17 -2.76 9.07 37.15 0.34 -2.42 16 15 C 0.44 10.86 7.18 -10.98 -0.08 10.78 16 16 O -0.57 -16.36 16.08 -14.36 -0.23 -16.59 16 17 N -0.55 -13.97 5.18 -10.96 -0.06 -14.03 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.12 1.10 7.10 -52.48 -0.37 0.73 16 31 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.13 1.77 5.32 -52.49 -0.28 1.49 16 39 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 42 H 0.39 9.34 7.33 -40.82 -0.30 9.04 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -31.28 353.22 -7.81 -39.09 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.49 Total: 9.75 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.73 Total: -10.33 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.67 Total: -37.26 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.56 Total: -22.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.28 -7.81 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126736130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.824 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds