Wall clock time and date at job start Tue Mar 31 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38160 * 120.02930 * 2 1 4 4 C 1.38244 * 120.05457 * 179.97438 * 3 2 1 5 5 C 1.38283 * 120.11411 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.97557 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46646 * 299.99627 * 6 5 4 8 8 C 1.52996 * 109.47123 * 59.99532 * 6 5 4 9 9 C 1.38126 * 120.05502 * 359.76614 * 5 4 3 10 10 C 1.38711 * 120.02457 * 179.97438 * 2 1 3 11 11 O 1.35896 * 120.05641 * 0.02562 * 10 2 1 12 12 C 1.42896 * 116.99988 * 174.79414 * 11 10 2 13 13 H 1.08999 * 109.47126 * 325.00040 * 12 11 10 14 14 C 1.52994 * 109.47816 * 85.00398 * 12 11 10 15 15 C 1.50707 * 109.47249 * 205.00711 * 12 11 10 16 16 O 1.21292 * 119.99629 * 359.97438 * 15 12 11 17 17 N 1.34774 * 120.00187 * 179.97438 * 15 12 11 18 18 C 1.37097 * 119.99899 * 179.97438 * 17 15 12 19 19 H 1.08001 * 120.00074 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00136 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99594 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00279 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47319 * 59.99884 * 22 20 18 24 24 H 1.48501 * 109.47284 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46979 * 299.99655 * 22 20 18 26 26 H 1.09001 * 109.46716 * 270.02273 * 1 2 3 27 27 H 1.09004 * 109.46878 * 30.01469 * 1 2 3 28 28 H 1.09002 * 109.47347 * 150.01703 * 1 2 3 29 29 H 1.08004 * 119.97537 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.94198 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47338 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47225 * 60.00217 * 7 6 5 33 33 H 1.08997 * 109.47078 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47778 * 300.00242 * 7 6 5 35 35 H 1.09001 * 109.46850 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47333 * 300.00102 * 8 6 5 37 37 H 1.08997 * 109.47382 * 60.00495 * 8 6 5 38 38 H 1.07994 * 120.02936 * 180.27843 * 9 5 4 39 39 H 1.09000 * 109.46788 * 300.00462 * 14 12 11 40 40 H 1.09004 * 109.46659 * 59.99866 * 14 12 11 41 41 H 1.08994 * 109.47793 * 179.97438 * 14 12 11 42 42 H 0.96995 * 120.00092 * 359.72493 * 17 15 12 43 43 H 0.97005 * 119.99742 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2752 0.0009 0.0016 6 6 5.7822 0.0052 0.0028 7 6 6.2910 0.7273 -1.2465 8 6 6.2892 0.7285 1.2520 9 6 3.5887 -1.1977 0.0070 10 6 2.2011 -1.2010 0.0005 11 8 1.5233 -2.3788 0.0005 12 6 2.2988 -3.5736 -0.1144 13 1 3.1538 -3.3905 -0.7652 14 6 2.7931 -3.9961 1.2704 15 6 1.4475 -4.6706 -0.7002 16 8 0.2904 -4.4509 -0.9903 17 7 1.9719 -5.8956 -0.9019 18 6 1.1974 -6.8937 -1.4343 19 1 0.1671 -6.6981 -1.6925 20 6 1.7378 -8.1569 -1.6417 21 7 2.9916 -8.3946 -1.3279 22 14 0.6827 -9.5165 -2.3678 23 1 0.2030 -9.1065 -3.7120 24 1 1.4887 -10.7580 -2.4878 25 1 -0.4822 -9.7660 -1.4812 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6585 2.1315 0.0004 30 1 4.1196 2.1329 0.0010 31 1 6.1485 -1.0214 0.0031 32 1 5.9247 1.7539 -1.2473 33 1 7.3810 0.7308 -1.2455 34 1 5.9298 0.2121 -2.1365 35 1 7.3792 0.7320 1.2526 36 1 5.9229 1.7551 1.2512 37 1 5.9267 0.2141 2.1420 38 1 4.1313 -2.1313 0.0124 39 1 3.4088 -3.2027 1.6941 40 1 1.9380 -4.1792 1.9211 41 1 3.3842 -4.9077 1.1828 42 1 2.8983 -6.0702 -0.6736 43 1 3.3688 -9.2766 -1.4723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126736130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:46 Heat of formation + Delta-G solvation = -90.168780 kcal Electronic energy + Delta-G solvation = -23259.920281 eV Core-core repulsion = 19882.854309 eV Total energy + Delta-G solvation = -3377.065972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64154 -40.24301 -38.72798 -36.40129 -36.04968 -33.76814 -32.75971 -32.13557 -30.86844 -27.93303 -27.45426 -27.28548 -25.39044 -23.49808 -23.24480 -21.15274 -20.93121 -20.08277 -18.45254 -17.93069 -17.16353 -16.64218 -16.56177 -16.49522 -15.81433 -15.52099 -15.29351 -15.08347 -14.67067 -14.48233 -14.31921 -14.07101 -13.99160 -13.56801 -13.40673 -13.17524 -13.08654 -12.99353 -12.93960 -12.69832 -12.53184 -12.49384 -12.26579 -12.14443 -12.11287 -11.72422 -11.58479 -11.56103 -11.42748 -10.41869 -10.12066 -9.62940 -8.97726 -8.53468 -6.03840 0.38164 0.51433 1.35982 1.40413 1.50987 1.85635 1.95112 2.33465 2.79019 3.11237 3.14223 3.62664 3.73485 3.86969 3.96752 4.04127 4.13888 4.17264 4.32282 4.35779 4.42962 4.54238 4.59102 4.65790 4.73214 4.77510 4.80185 4.86406 4.95814 5.00511 5.03614 5.05887 5.19675 5.32362 5.34983 5.35372 5.43749 5.49329 5.58436 5.72573 5.85516 5.96102 6.41187 6.54482 7.02403 7.39778 7.94802 8.63202 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003673 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.813231 B = 7621.834726 C = 8528.069014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.143 4.143 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.045 4.045 6 C -0.059 4.059 7 C -0.141 4.141 8 C -0.139 4.139 9 C -0.217 4.217 10 C 0.105 3.895 11 O -0.307 6.307 12 C 0.087 3.913 13 H 0.101 0.899 14 C -0.161 4.161 15 C 0.436 3.564 16 O -0.623 6.623 17 N -0.554 5.554 18 C -0.342 4.342 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.913 5.913 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.266 1.266 25 H -0.271 1.271 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.400 0.600 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 18.561 4.759 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.144 4.144 3 C -0.096 4.096 4 C -0.168 4.168 5 C -0.045 4.045 6 C -0.078 4.078 7 C -0.198 4.198 8 C -0.196 4.196 9 C -0.236 4.236 10 C 0.060 3.940 11 O -0.220 6.220 12 C 0.027 3.973 13 H 0.118 0.882 14 C -0.219 4.219 15 C 0.223 3.777 16 O -0.510 6.510 17 N -0.191 5.191 18 C -0.471 4.471 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.553 5.553 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.190 1.190 25 H -0.196 1.196 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.149 0.851 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.235 0.765 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.344 18.477 4.572 20.782 hybrid contribution -0.115 -1.311 -0.315 1.353 sum 8.228 17.166 4.257 19.506 Atomic orbital electron populations 1.20571 0.90603 1.02378 1.02317 1.19565 0.97023 0.90782 1.07026 1.21141 0.94471 0.96611 0.97370 1.21130 0.93733 0.98228 1.03687 1.19917 0.96374 0.92036 0.96184 1.20203 0.89231 1.01114 0.97225 1.21838 1.01551 1.00578 0.95861 1.21819 1.01496 1.00530 0.95756 1.21344 0.92268 1.00048 1.09903 1.19320 0.91455 0.85590 0.97601 1.86175 1.35978 1.12189 1.87677 1.21997 0.92895 0.82981 0.99389 0.88187 1.22254 1.02095 1.03494 0.94053 1.20319 0.88453 0.84381 0.84587 1.90507 1.20135 1.82684 1.57694 1.41725 1.13912 1.08096 1.55372 1.19663 0.96504 0.90438 1.40499 0.90258 1.26059 0.97531 0.99957 0.97024 1.69652 1.13619 1.24719 1.47262 0.84964 0.77843 0.76761 0.78636 1.19677 1.19034 1.19622 0.91149 0.89504 0.94102 0.82743 0.83382 0.90825 0.91514 0.90973 0.93735 0.91054 0.91577 0.93244 0.85068 0.89011 0.92334 0.89512 0.76547 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.79 71.24 0.70 -2.17 16 2 C -0.14 -4.19 5.89 -19.77 -0.12 -4.31 16 3 C -0.08 -1.72 9.70 22.25 0.22 -1.50 16 4 C -0.15 -3.00 8.71 22.28 0.19 -2.80 16 5 C -0.04 -1.01 4.78 -19.88 -0.10 -1.11 16 6 C -0.06 -1.02 3.09 -11.54 -0.04 -1.06 16 7 C -0.14 -2.09 9.01 71.98 0.65 -1.45 16 8 C -0.14 -1.91 9.01 71.98 0.65 -1.26 16 9 C -0.22 -6.12 7.87 22.37 0.18 -5.94 16 10 C 0.11 3.54 6.57 22.51 0.15 3.69 16 11 O -0.31 -12.58 8.38 -73.34 -0.61 -13.20 16 12 C 0.09 3.42 2.64 29.85 0.08 3.50 16 13 H 0.10 3.51 6.31 -2.39 -0.02 3.50 16 14 C -0.16 -5.20 9.07 71.98 0.65 -4.54 16 15 C 0.44 22.37 7.18 87.66 0.63 23.00 16 16 O -0.62 -37.76 16.08 15.97 0.26 -37.51 16 17 N -0.55 -29.03 5.18 -306.98 -1.59 -30.61 16 18 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 19 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 20 C 0.00 -0.25 5.50 84.93 0.47 0.22 16 21 N -0.91 -48.32 13.05 21.66 0.28 -48.04 16 22 Si 1.00 42.56 29.55 68.60 2.03 44.58 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 28 H 0.04 1.43 7.53 -2.39 -0.02 1.41 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 2.07 7.10 -2.91 -0.02 2.05 16 31 H 0.07 1.32 7.87 -2.39 -0.02 1.31 16 32 H 0.07 0.86 7.39 -2.38 -0.02 0.84 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.79 7.38 -2.39 -0.02 0.77 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 3.51 5.32 -2.91 -0.02 3.49 16 39 H 0.09 2.42 6.91 -2.39 -0.02 2.41 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.09 2.64 7.57 -2.39 -0.02 2.62 16 42 H 0.40 19.45 7.33 -92.71 -0.68 18.77 16 43 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -70.36 353.22 5.82 -64.54 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.33 Total: 34.79 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.12 Total: -14.56 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.31 Total: -78.65 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.36 Total: -50.70 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.36 5.82 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126736130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.632 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds