Wall clock time and date at job start Tue Mar 31 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38162 * 120.02776 * 2 1 4 4 C 1.38247 * 120.05655 * 179.79313 * 3 2 1 5 5 C 1.38292 * 120.11266 * 0.46277 * 4 3 2 6 6 C 1.50692 * 119.97477 * 179.77123 * 5 4 3 7 7 C 1.53001 * 109.46911 * 300.01888 * 6 5 4 8 8 C 1.53006 * 109.47214 * 60.01908 * 6 5 4 9 9 C 1.38125 * 120.05262 * 359.78929 * 5 4 3 10 10 C 1.38711 * 120.02932 * 180.27506 * 2 1 3 11 11 O 1.35898 * 120.05787 * 359.95774 * 10 2 1 12 12 C 1.42902 * 117.00606 * 185.50862 * 11 10 2 13 13 H 1.09003 * 109.46503 * 34.99408 * 12 11 10 14 14 C 1.52994 * 109.46834 * 274.99770 * 12 11 10 15 15 C 1.50701 * 109.47373 * 154.99394 * 12 11 10 16 16 O 1.21292 * 119.99895 * 5.00035 * 15 12 11 17 17 N 1.34777 * 119.99891 * 185.00287 * 15 12 11 18 18 C 1.37093 * 119.99651 * 180.02562 * 17 15 12 19 19 H 1.07999 * 120.00259 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99895 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00378 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47109 * 89.99742 * 22 20 18 24 24 H 1.48501 * 109.47025 * 210.00029 * 22 20 18 25 25 H 1.48504 * 109.46935 * 329.99514 * 22 20 18 26 26 H 1.08993 * 109.47369 * 269.72078 * 1 2 3 27 27 H 1.09000 * 109.47059 * 149.72433 * 1 2 3 28 28 H 1.08992 * 109.47262 * 29.72681 * 1 2 3 29 29 H 1.08000 * 119.97447 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.94800 * 180.20742 * 4 3 2 31 31 H 1.09004 * 109.47187 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.46959 * 60.00514 * 7 6 5 33 33 H 1.08999 * 109.46907 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47470 * 299.99679 * 7 6 5 35 35 H 1.09004 * 109.46775 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.46659 * 300.00050 * 8 6 5 37 37 H 1.09001 * 109.46699 * 59.99966 * 8 6 5 38 38 H 1.07996 * 120.02857 * 180.02562 * 9 5 4 39 39 H 1.09005 * 109.47009 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47279 * 299.99162 * 14 12 11 41 41 H 1.08997 * 109.47874 * 60.00038 * 14 12 11 42 42 H 0.96997 * 119.99864 * 0.02562 * 17 15 12 43 43 H 0.97002 * 120.00449 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0043 5 6 4.2753 0.0010 -0.0010 6 6 5.7822 0.0054 -0.0015 7 6 6.2896 0.7339 -1.2476 8 6 6.2905 0.7224 1.2509 9 6 3.5887 -1.1976 -0.0063 10 6 2.2012 -1.2009 -0.0058 11 8 1.5235 -2.3788 -0.0106 12 6 2.2984 -3.5738 0.1059 13 1 3.1507 -3.3917 0.7606 14 6 2.7987 -3.9940 -1.2776 15 6 1.4447 -4.6717 0.6862 16 8 0.2641 -4.4798 0.8875 17 7 1.9931 -5.8669 0.9817 18 6 1.2163 -6.8659 1.5091 19 1 0.1651 -6.6949 1.6883 20 6 1.7817 -8.0979 1.8142 21 7 3.0610 -8.3057 1.5967 22 14 0.7235 -9.4588 2.5336 23 1 0.1497 -10.2739 1.4329 24 1 1.5562 -10.3236 3.4077 25 1 -0.3765 -8.8608 3.3322 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8923 -0.5095 29 1 1.6584 2.1315 0.0004 30 1 4.1195 2.1330 0.0077 31 1 6.1486 -1.0212 -0.0064 32 1 5.9233 1.7604 -1.2427 33 1 7.3796 0.7367 -1.2482 34 1 5.9276 0.2231 -2.1398 35 1 7.3806 0.7260 1.2503 36 1 5.9242 1.7489 1.2557 37 1 5.9290 0.2034 2.1386 38 1 4.1314 -2.1312 -0.0100 39 1 3.3902 -4.9052 -1.1887 40 1 1.9464 -4.1761 -1.9323 41 1 3.4162 -3.1999 -1.6974 42 1 2.9373 -6.0203 0.8211 43 1 3.4557 -9.1659 1.8094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126736354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:50 Heat of formation + Delta-G solvation = -73.002783 kcal Electronic energy + Delta-G solvation = -23259.798543 eV Core-core repulsion = 19883.476944 eV Total energy + Delta-G solvation = -3376.321599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39284 -38.64681 -37.29685 -35.43245 -33.98775 -32.07253 -31.47321 -30.65830 -29.76396 -27.28424 -26.41462 -25.38092 -23.90375 -22.45416 -22.06714 -20.04339 -19.25452 -18.08669 -17.22702 -16.37329 -15.74689 -15.49534 -15.20472 -14.75332 -14.39288 -14.16141 -13.94062 -13.82587 -13.51058 -13.36682 -13.16021 -12.78828 -12.61190 -12.42517 -12.23918 -12.04220 -11.79243 -11.75196 -11.61243 -11.39968 -11.28337 -11.17465 -11.07042 -10.78009 -10.59446 -10.43266 -10.41720 -10.27873 -9.58704 -8.64160 -8.41371 -8.05857 -7.83149 -6.48922 -3.90375 1.39947 1.57922 3.13950 3.22667 3.26384 3.38419 3.74997 3.83413 4.15989 4.53338 4.70891 4.82777 4.96454 5.06652 5.10212 5.13356 5.20086 5.26803 5.34737 5.44660 5.46629 5.50180 5.61764 5.66730 5.72986 5.77021 5.80455 5.84981 5.92609 5.96034 6.01891 6.05282 6.09655 6.17256 6.38882 6.40984 6.48054 6.63736 6.69642 6.95197 7.49040 7.68536 7.97290 8.51461 9.09330 9.42026 9.92781 10.68477 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.003691 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.676946 B = 7584.489155 C = 8492.934567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.158 4.158 5 C -0.044 4.044 6 C -0.059 4.059 7 C -0.142 4.142 8 C -0.143 4.143 9 C -0.208 4.208 10 C 0.141 3.859 11 O -0.277 6.277 12 C 0.075 3.925 13 H 0.083 0.917 14 C -0.172 4.172 15 C 0.445 3.555 16 O -0.573 6.573 17 N -0.554 5.554 18 C -0.301 4.301 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.899 5.899 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.393 0.607 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 16.974 -4.668 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.176 4.176 5 C -0.045 4.045 6 C -0.077 4.077 7 C -0.199 4.199 8 C -0.200 4.200 9 C -0.227 4.227 10 C 0.095 3.905 11 O -0.189 6.189 12 C 0.015 3.985 13 H 0.100 0.900 14 C -0.229 4.229 15 C 0.229 3.771 16 O -0.456 6.456 17 N -0.191 5.191 18 C -0.430 4.430 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.540 5.540 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.227 0.773 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.295 16.875 -4.506 18.566 hybrid contribution 0.449 -0.940 0.272 1.076 sum 6.745 15.936 -4.234 17.815 Atomic orbital electron populations 1.20590 0.90559 1.02550 1.02407 1.19267 0.96609 0.90291 1.06233 1.20788 0.93928 0.96545 0.98869 1.20737 0.93822 0.97305 1.05749 1.19568 0.94910 0.92510 0.97464 1.20141 0.90991 1.00701 0.95863 1.21837 1.00553 1.00427 0.97107 1.21845 1.00559 1.00488 0.97124 1.21235 0.93070 0.98887 1.09460 1.18970 0.90329 0.86293 0.94939 1.86231 1.34777 1.11253 1.86642 1.22213 0.94073 0.84318 0.97904 0.89964 1.22310 1.02214 1.02295 0.96124 1.19336 0.88518 0.83726 0.85519 1.90556 1.16054 1.81305 1.57727 1.41722 1.11948 1.09917 1.55496 1.19726 0.94932 0.90501 1.37885 0.87713 1.25277 0.96192 0.98649 0.97580 1.69608 1.10970 1.25310 1.48119 0.85823 0.79367 0.80049 0.78883 1.20282 1.20826 1.19299 0.91461 0.90754 0.92204 0.85805 0.86428 0.90453 0.92478 0.92505 0.92516 0.92484 0.92479 0.92418 0.85242 0.90236 0.91031 0.91825 0.77321 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.79 36.00 0.35 -1.09 16 2 C -0.12 -1.83 5.89 -104.48 -0.62 -2.44 16 3 C -0.08 -1.02 9.70 -39.61 -0.38 -1.41 16 4 C -0.16 -1.83 8.71 -39.56 -0.34 -2.18 16 5 C -0.04 -0.55 4.78 -104.65 -0.50 -1.05 16 6 C -0.06 -0.58 3.09 -91.77 -0.28 -0.87 16 7 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 8 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 9 C -0.21 -3.00 7.87 -39.43 -0.31 -3.31 16 10 C 0.14 2.34 6.57 -39.21 -0.26 2.09 16 11 O -0.28 -5.44 8.38 -39.28 -0.33 -5.77 16 12 C 0.08 1.43 2.63 -27.89 -0.07 1.35 16 13 H 0.08 1.42 6.31 -51.93 -0.33 1.09 16 14 C -0.17 -2.75 9.13 37.15 0.34 -2.41 16 15 C 0.44 10.87 7.13 -10.98 -0.08 10.79 16 16 O -0.57 -16.35 16.08 -14.31 -0.23 -16.58 16 17 N -0.55 -13.99 5.25 -10.96 -0.06 -14.05 16 18 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 19 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.17 7.53 -51.93 -0.39 0.78 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.10 7.09 -52.49 -0.37 0.73 16 31 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.77 5.32 -52.49 -0.28 1.49 16 39 H 0.08 1.22 7.93 -51.93 -0.41 0.80 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 42 H 0.39 9.35 7.68 -40.82 -0.31 9.03 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -31.34 354.01 -7.83 -39.17 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.52 Total: 9.63 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.73 Total: -10.26 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.67 Total: -37.30 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.56 Total: -22.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.34 -7.83 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126736354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.832 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds