Wall clock time and date at job start Tue Mar 31 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38162 * 120.02776 * 2 1 4 4 C 1.38247 * 120.05655 * 179.79313 * 3 2 1 5 5 C 1.38292 * 120.11266 * 0.46277 * 4 3 2 6 6 C 1.50692 * 119.97477 * 179.77123 * 5 4 3 7 7 C 1.53001 * 109.46911 * 300.01888 * 6 5 4 8 8 C 1.53006 * 109.47214 * 60.01908 * 6 5 4 9 9 C 1.38125 * 120.05262 * 359.78929 * 5 4 3 10 10 C 1.38711 * 120.02932 * 180.27506 * 2 1 3 11 11 O 1.35898 * 120.05787 * 359.95774 * 10 2 1 12 12 C 1.42902 * 117.00606 * 185.50862 * 11 10 2 13 13 H 1.09003 * 109.46503 * 34.99408 * 12 11 10 14 14 C 1.52994 * 109.46834 * 274.99770 * 12 11 10 15 15 C 1.50701 * 109.47373 * 154.99394 * 12 11 10 16 16 O 1.21292 * 119.99895 * 5.00035 * 15 12 11 17 17 N 1.34777 * 119.99891 * 185.00287 * 15 12 11 18 18 C 1.37093 * 119.99651 * 180.02562 * 17 15 12 19 19 H 1.07999 * 120.00259 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99895 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00378 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47109 * 89.99742 * 22 20 18 24 24 H 1.48501 * 109.47025 * 210.00029 * 22 20 18 25 25 H 1.48504 * 109.46935 * 329.99514 * 22 20 18 26 26 H 1.08993 * 109.47369 * 269.72078 * 1 2 3 27 27 H 1.09000 * 109.47059 * 149.72433 * 1 2 3 28 28 H 1.08992 * 109.47262 * 29.72681 * 1 2 3 29 29 H 1.08000 * 119.97447 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.94800 * 180.20742 * 4 3 2 31 31 H 1.09004 * 109.47187 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.46959 * 60.00514 * 7 6 5 33 33 H 1.08999 * 109.46907 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47470 * 299.99679 * 7 6 5 35 35 H 1.09004 * 109.46775 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.46659 * 300.00050 * 8 6 5 37 37 H 1.09001 * 109.46699 * 59.99966 * 8 6 5 38 38 H 1.07996 * 120.02857 * 180.02562 * 9 5 4 39 39 H 1.09005 * 109.47009 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47279 * 299.99162 * 14 12 11 41 41 H 1.08997 * 109.47874 * 60.00038 * 14 12 11 42 42 H 0.96997 * 119.99864 * 0.02562 * 17 15 12 43 43 H 0.97002 * 120.00449 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0043 5 6 4.2753 0.0010 -0.0010 6 6 5.7822 0.0054 -0.0015 7 6 6.2896 0.7339 -1.2476 8 6 6.2905 0.7224 1.2509 9 6 3.5887 -1.1976 -0.0063 10 6 2.2012 -1.2009 -0.0058 11 8 1.5235 -2.3788 -0.0106 12 6 2.2984 -3.5738 0.1059 13 1 3.1507 -3.3917 0.7606 14 6 2.7987 -3.9940 -1.2776 15 6 1.4447 -4.6717 0.6862 16 8 0.2641 -4.4798 0.8875 17 7 1.9931 -5.8669 0.9817 18 6 1.2163 -6.8659 1.5091 19 1 0.1651 -6.6949 1.6883 20 6 1.7817 -8.0979 1.8142 21 7 3.0610 -8.3057 1.5967 22 14 0.7235 -9.4588 2.5336 23 1 0.1497 -10.2739 1.4329 24 1 1.5562 -10.3236 3.4077 25 1 -0.3765 -8.8608 3.3322 26 1 -0.3634 -0.0050 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8923 -0.5095 29 1 1.6584 2.1315 0.0004 30 1 4.1195 2.1330 0.0077 31 1 6.1486 -1.0212 -0.0064 32 1 5.9233 1.7604 -1.2427 33 1 7.3796 0.7367 -1.2482 34 1 5.9276 0.2231 -2.1398 35 1 7.3806 0.7260 1.2503 36 1 5.9242 1.7489 1.2557 37 1 5.9290 0.2034 2.1386 38 1 4.1314 -2.1312 -0.0100 39 1 3.3902 -4.9052 -1.1887 40 1 1.9464 -4.1761 -1.9323 41 1 3.4162 -3.1999 -1.6974 42 1 2.9373 -6.0203 0.8211 43 1 3.4557 -9.1659 1.8094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126736354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:49 Heat of formation + Delta-G solvation = -90.337548 kcal Electronic energy + Delta-G solvation = -23260.550235 eV Core-core repulsion = 19883.476944 eV Total energy + Delta-G solvation = -3377.073291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64045 -40.24195 -38.72881 -36.40329 -36.04573 -33.74646 -32.76845 -32.14717 -30.87056 -27.93266 -27.45838 -27.30572 -25.37840 -23.49575 -23.24690 -21.15591 -20.93550 -20.07267 -18.45831 -17.92013 -17.16501 -16.65237 -16.55648 -16.50167 -15.80825 -15.49256 -15.32484 -15.09392 -14.67930 -14.48045 -14.31502 -14.08780 -13.95847 -13.57706 -13.38282 -13.17658 -13.11996 -13.00148 -12.94718 -12.70639 -12.52099 -12.48921 -12.25036 -12.14947 -12.11426 -11.72359 -11.59045 -11.56067 -11.42838 -10.41872 -10.12012 -9.63210 -8.97671 -8.53656 -6.03993 0.38068 0.51194 1.34265 1.40423 1.52774 1.86854 1.93078 2.33326 2.79158 3.10549 3.14740 3.62627 3.73359 3.86964 3.97756 4.04150 4.13399 4.17319 4.32322 4.35797 4.43045 4.54252 4.59058 4.65521 4.72689 4.77620 4.79868 4.86498 4.95692 5.00370 5.03602 5.05400 5.19682 5.32370 5.35026 5.35152 5.43785 5.49229 5.58344 5.72535 5.85427 5.96077 6.40988 6.54452 7.02468 7.39705 7.94704 8.63247 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.003691 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.676946 B = 7584.489155 C = 8492.934567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.143 4.143 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.045 4.045 6 C -0.059 4.059 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.217 4.217 10 C 0.105 3.895 11 O -0.307 6.307 12 C 0.087 3.913 13 H 0.100 0.900 14 C -0.161 4.161 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.554 5.554 18 C -0.341 4.341 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.913 5.913 22 Si 0.995 3.005 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.400 0.600 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 18.508 -4.912 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C -0.096 4.096 4 C -0.168 4.168 5 C -0.045 4.045 6 C -0.078 4.078 7 C -0.196 4.196 8 C -0.198 4.198 9 C -0.236 4.236 10 C 0.060 3.940 11 O -0.221 6.221 12 C 0.027 3.973 13 H 0.118 0.882 14 C -0.219 4.219 15 C 0.223 3.777 16 O -0.510 6.510 17 N -0.192 5.192 18 C -0.470 4.470 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.553 5.553 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.191 1.191 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.234 0.766 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.294 18.416 -4.763 20.751 hybrid contribution -0.101 -1.309 0.353 1.359 sum 8.193 17.107 -4.410 19.474 Atomic orbital electron populations 1.20557 0.90602 1.02598 1.02026 1.19565 0.97013 0.90787 1.07037 1.21144 0.94472 0.96613 0.97358 1.21134 0.93732 0.98231 1.03679 1.19918 0.96374 0.92036 0.96173 1.20206 0.89232 1.01118 0.97224 1.21820 1.01494 1.00504 0.95783 1.21839 1.01553 1.00600 0.95834 1.21345 0.92268 1.00052 1.09892 1.19322 0.91454 0.85593 0.97602 1.86174 1.36020 1.12175 1.87698 1.21995 0.92855 0.82956 0.99445 0.88222 1.22245 1.02033 1.03534 0.94047 1.20312 0.88525 0.84491 0.84342 1.90508 1.18519 1.82351 1.59581 1.41727 1.12016 1.10057 1.55366 1.19691 0.94495 0.92257 1.40530 0.90270 1.26059 0.97473 1.00031 0.97030 1.69656 1.11828 1.26214 1.47599 0.84904 0.77764 0.77164 0.78368 1.19385 1.19141 1.19856 0.92054 0.93657 0.89153 0.82735 0.83378 0.90821 0.91570 0.91055 0.93248 0.90972 0.91513 0.93736 0.85062 0.89508 0.92355 0.89008 0.76574 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.85 9.79 71.24 0.70 -2.15 16 2 C -0.14 -4.19 5.89 -19.77 -0.12 -4.31 16 3 C -0.08 -1.72 9.70 22.25 0.22 -1.50 16 4 C -0.15 -3.00 8.71 22.28 0.19 -2.80 16 5 C -0.04 -1.01 4.78 -19.88 -0.10 -1.11 16 6 C -0.06 -1.02 3.09 -11.54 -0.04 -1.06 16 7 C -0.14 -1.91 9.01 71.98 0.65 -1.26 16 8 C -0.14 -2.10 9.01 71.98 0.65 -1.45 16 9 C -0.22 -6.11 7.87 22.37 0.18 -5.94 16 10 C 0.11 3.54 6.57 22.51 0.15 3.69 16 11 O -0.31 -12.59 8.38 -73.42 -0.62 -13.21 16 12 C 0.09 3.43 2.63 29.85 0.08 3.51 16 13 H 0.10 3.49 6.31 -2.39 -0.02 3.48 16 14 C -0.16 -5.18 9.13 71.98 0.66 -4.53 16 15 C 0.44 22.39 7.13 87.66 0.63 23.01 16 16 O -0.62 -37.70 16.08 15.92 0.26 -37.45 16 17 N -0.55 -29.06 5.25 -306.99 -1.61 -30.67 16 18 C -0.34 -19.56 9.68 84.04 0.81 -18.75 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 20 C -0.01 -0.27 5.50 84.93 0.47 0.20 16 21 N -0.91 -48.35 13.05 21.66 0.28 -48.07 16 22 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 28 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.15 2.07 7.09 -2.91 -0.02 2.05 16 31 H 0.07 1.33 7.87 -2.38 -0.02 1.31 16 32 H 0.07 0.79 7.38 -2.39 -0.02 0.77 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 0.86 7.39 -2.39 -0.02 0.84 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 3.51 5.32 -2.91 -0.02 3.49 16 39 H 0.09 2.63 7.93 -2.38 -0.02 2.61 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.09 2.42 6.91 -2.39 -0.02 2.41 16 42 H 0.40 19.46 7.68 -92.71 -0.71 18.75 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -70.38 354.01 5.76 -64.62 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.30 Total: 34.61 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 5.12 Total: -14.44 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.33 Total: -78.74 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.36 Total: -50.66 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.38 5.76 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126736354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.716 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds