Wall clock time and date at job start Tue Mar 31 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 112.85023 * 2 1 4 4 C 1.53779 * 113.61367 * 131.19376 * 2 1 3 5 5 H 1.08996 * 113.61724 * 25.35290 * 4 2 1 6 6 N 1.46897 * 113.61488 * 254.53033 * 4 2 1 7 7 C 1.46904 * 111.00138 * 156.53106 * 6 4 2 8 8 C 1.50697 * 109.47595 * 180.02562 * 7 6 4 9 9 C 1.38302 * 119.92782 * 269.72948 * 8 7 6 10 10 C 1.38102 * 120.06410 * 179.72253 * 9 8 7 11 11 C 1.38875 * 119.93446 * 0.54844 * 10 9 8 12 12 O 1.35746 * 120.07358 * 179.74952 * 11 10 9 13 13 C 1.34827 * 117.00130 * 174.43937 * 12 11 10 14 14 H 1.07999 * 120.00524 * 5.05367 * 13 12 11 15 15 C 1.38652 * 119.99861 * 185.05015 * 13 12 11 16 16 N 1.31555 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47043 * 60.00462 * 17 15 13 19 19 H 1.48506 * 109.47443 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47523 * 300.00610 * 17 15 13 21 21 C 1.38883 * 119.85870 * 359.72273 * 11 10 9 22 22 C 1.38099 * 119.93345 * 0.02562 * 21 11 10 23 23 C 1.53787 * 87.17388 * 139.94378 * 4 2 1 24 24 C 1.53780 * 113.61830 * 228.69470 * 2 1 3 25 25 H 1.09000 * 113.61442 * 334.65126 * 24 2 1 26 26 O 1.42904 * 113.61544 * 105.47067 * 24 2 1 27 27 H 1.08991 * 109.47419 * 288.80320 * 1 2 3 28 28 H 1.09006 * 109.46955 * 48.80647 * 1 2 3 29 29 H 1.08994 * 109.46915 * 168.79940 * 1 2 3 30 30 H 1.08998 * 109.47213 * 191.19377 * 3 2 1 31 31 H 1.08997 * 109.46972 * 311.20140 * 3 2 1 32 32 H 1.09002 * 109.46749 * 71.18823 * 3 2 1 33 33 H 1.00905 * 111.00721 * 280.48184 * 6 4 2 34 34 H 1.09004 * 109.46783 * 300.00564 * 7 6 4 35 35 H 1.09002 * 109.47086 * 59.99743 * 7 6 4 36 36 H 1.07993 * 119.96618 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.02994 * 180.26671 * 10 9 8 38 38 H 0.96997 * 120.00415 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.03521 * 179.97438 * 21 11 10 40 40 H 1.08001 * 119.96639 * 180.02562 * 22 21 11 41 41 H 1.08994 * 113.61600 * 89.15783 * 23 4 2 42 42 H 1.08991 * 113.61648 * 220.06642 * 23 4 2 43 43 H 0.96696 * 113.99663 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 1.4940 -1.7514 1.3517 6 7 2.7106 -0.2123 2.2121 7 6 2.7692 -1.0815 3.3949 8 6 3.3519 -0.3144 4.5538 9 6 4.7177 -0.3245 4.7711 10 6 5.2553 0.3821 5.8288 11 6 4.4219 1.0941 6.6815 12 8 4.9468 1.7855 7.7251 13 6 4.0975 2.5470 8.4440 14 1 3.0390 2.5237 8.2311 15 6 4.5831 3.3600 9.4567 16 7 5.8726 3.3888 9.7159 17 14 3.4066 4.4155 10.4523 18 1 2.4169 3.5442 11.1353 19 1 4.1703 5.1869 11.4658 20 1 2.6974 5.3550 9.5470 21 6 3.0502 1.0977 6.4640 22 6 2.5192 0.3933 5.4014 23 6 3.1928 -1.3159 0.0026 24 6 2.1461 -0.9300 -1.0584 25 1 1.4940 -1.7540 -1.3484 26 8 2.6954 -0.2359 -2.1803 27 1 -0.3634 0.3312 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3633 -1.0080 -0.1996 30 1 3.1942 1.3534 -0.1995 31 1 1.6414 2.0076 -0.7732 32 1 1.9598 1.8735 0.9728 33 1 3.6215 0.1629 1.9938 34 1 1.7637 -1.4162 3.6500 35 1 3.3963 -1.9466 3.1793 36 1 5.3649 -0.8823 4.1105 37 1 6.3224 0.3773 5.9954 38 1 6.2124 3.9578 10.4242 39 1 2.3993 1.6501 7.1256 40 1 1.4526 0.3960 5.2315 41 1 4.0725 -0.6723 0.0023 42 1 3.4432 -2.3766 0.0046 43 1 3.0841 -0.8156 -2.8496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129626006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:17 Heat of formation + Delta-G solvation = -35.809874 kcal Electronic energy + Delta-G solvation = -22687.456805 eV Core-core repulsion = 19312.748012 eV Total energy + Delta-G solvation = -3374.708793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39750 -39.00664 -36.91166 -35.76309 -33.81997 -32.23514 -30.62753 -30.14432 -29.07614 -27.44735 -25.66340 -24.47424 -22.92674 -22.59471 -21.93220 -20.44404 -18.57407 -17.96213 -17.63962 -16.91573 -15.70649 -15.40336 -14.96525 -14.70847 -14.52817 -14.39585 -13.94108 -13.64963 -13.54690 -13.23548 -13.04322 -12.78593 -12.70459 -12.62667 -12.21776 -12.08148 -11.83662 -11.71831 -11.57727 -11.23935 -10.99036 -10.87949 -10.81038 -10.66015 -10.60483 -10.42811 -10.22838 -9.86215 -9.31568 -8.81694 -8.25447 -8.14225 -7.16500 -6.43693 -4.02542 2.24047 2.31104 3.14286 3.15668 3.18252 3.86799 3.98210 4.27662 4.33154 4.38731 4.61073 4.63401 4.85204 5.10622 5.14285 5.17696 5.28168 5.32465 5.37869 5.42900 5.50162 5.64428 5.67517 5.75886 5.80838 5.83808 5.91075 5.92929 5.98708 6.11925 6.23024 6.25138 6.44960 6.48500 6.72030 6.92972 7.04826 7.16587 7.23935 7.40403 7.42472 7.45704 7.51514 7.85069 8.01492 9.01993 9.72219 10.74344 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.002807 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.757538 B = 9972.587148 C =10335.730309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.111 4.111 4 C 0.076 3.924 5 H 0.096 0.904 6 N -0.667 5.667 7 C 0.118 3.882 8 C -0.185 4.185 9 C -0.069 4.069 10 C -0.194 4.194 11 C 0.156 3.844 12 O -0.178 6.178 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.235 4.235 22 C -0.048 4.048 23 C -0.199 4.199 24 C 0.082 3.918 25 H 0.077 0.923 26 O -0.554 6.554 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -9.421 -19.016 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.169 4.169 4 C -0.035 4.035 5 H 0.114 0.886 6 N -0.297 5.297 7 C -0.010 4.010 8 C -0.187 4.187 9 C -0.088 4.088 10 C -0.213 4.213 11 C 0.102 3.898 12 O -0.081 6.081 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.255 4.255 22 C -0.067 4.067 23 C -0.239 4.239 24 C 0.022 3.978 25 H 0.095 0.905 26 O -0.358 6.358 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -8.389 -8.468 -18.201 21.757 hybrid contribution 0.349 -0.635 -0.050 0.726 sum -8.040 -9.103 -18.251 21.922 Atomic orbital electron populations 1.21725 0.94011 1.01200 1.02318 1.22126 0.95214 0.96298 0.92648 1.21257 1.00245 0.93492 1.01870 1.22863 0.96209 0.95427 0.89016 0.88609 1.60422 1.30352 1.35755 1.03147 1.20654 0.99538 0.92504 0.88276 1.19114 0.93382 1.06603 0.99559 1.20472 0.94028 0.97850 0.96409 1.20163 0.99021 1.04420 0.97728 1.19393 0.91639 0.91168 0.87604 1.83973 1.36972 1.52214 1.34991 1.21284 0.90241 1.21307 1.13975 0.89100 1.25284 0.96798 0.97230 0.97178 1.70027 1.12187 1.37507 1.30151 0.85787 0.79136 0.79456 0.79097 1.19510 1.20291 1.19461 1.21170 0.95194 1.07042 1.02067 1.20566 0.98241 0.94597 0.93321 1.24410 0.99137 1.01608 0.98739 1.23448 0.94718 0.94821 0.84813 0.90477 1.86560 1.79033 1.37244 1.32997 0.91700 0.92631 0.93078 0.92753 0.93157 0.91158 0.83529 0.91261 0.95494 0.87572 0.86674 0.91979 0.85634 0.87516 0.89070 0.91608 0.78095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.06 -0.62 1.35 -153.69 -0.21 -0.82 16 3 C -0.11 -1.27 7.79 37.16 0.29 -0.98 16 4 C 0.08 0.76 3.61 -66.90 -0.24 0.52 16 5 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 6 N -0.67 -8.12 5.55 -107.13 -0.59 -8.72 16 7 C 0.12 1.55 5.66 -4.98 -0.03 1.52 16 8 C -0.19 -3.11 5.40 -104.58 -0.56 -3.67 16 9 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 10 C -0.19 -4.11 9.99 -39.40 -0.39 -4.50 16 11 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 12 O -0.18 -5.13 9.76 0.07 0.00 -5.13 16 13 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 14 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 17 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.24 -5.16 9.17 -39.39 -0.36 -5.52 16 22 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 23 C -0.20 -1.76 7.20 -25.82 -0.19 -1.95 16 24 C 0.08 0.70 4.63 -25.83 -0.12 0.58 16 25 H 0.08 0.55 7.96 -51.93 -0.41 0.14 16 26 O -0.55 -5.01 12.77 -35.23 -0.45 -5.46 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.40 7.94 -51.93 -0.41 -0.02 16 30 H 0.05 0.64 7.20 -51.93 -0.37 0.26 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 33 H 0.35 4.34 8.08 -39.29 -0.32 4.02 16 34 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.37 1.78 9.12 45.56 0.42 2.20 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -31.11 352.93 -8.09 -39.20 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.80 Total: 8.71 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -2.30 Total: -24.81 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.16 Total: -33.45 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.45 Total: -10.59 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.11 -8.09 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129626006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.385 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds