Wall clock time and date at job start Tue Mar 31 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 112.85023 * 2 1 4 4 C 1.53779 * 113.61367 * 131.19376 * 2 1 3 5 5 H 1.08996 * 113.61724 * 25.35290 * 4 2 1 6 6 N 1.46897 * 113.61488 * 254.53033 * 4 2 1 7 7 C 1.46904 * 111.00138 * 156.53106 * 6 4 2 8 8 C 1.50697 * 109.47595 * 180.02562 * 7 6 4 9 9 C 1.38302 * 119.92782 * 269.72948 * 8 7 6 10 10 C 1.38102 * 120.06410 * 179.72253 * 9 8 7 11 11 C 1.38875 * 119.93446 * 0.54844 * 10 9 8 12 12 O 1.35746 * 120.07358 * 179.74952 * 11 10 9 13 13 C 1.34827 * 117.00130 * 174.43937 * 12 11 10 14 14 H 1.07999 * 120.00524 * 5.05367 * 13 12 11 15 15 C 1.38652 * 119.99861 * 185.05015 * 13 12 11 16 16 N 1.31555 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47043 * 60.00462 * 17 15 13 19 19 H 1.48506 * 109.47443 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47523 * 300.00610 * 17 15 13 21 21 C 1.38883 * 119.85870 * 359.72273 * 11 10 9 22 22 C 1.38099 * 119.93345 * 0.02562 * 21 11 10 23 23 C 1.53787 * 87.17388 * 139.94378 * 4 2 1 24 24 C 1.53780 * 113.61830 * 228.69470 * 2 1 3 25 25 H 1.09000 * 113.61442 * 334.65126 * 24 2 1 26 26 O 1.42904 * 113.61544 * 105.47067 * 24 2 1 27 27 H 1.08991 * 109.47419 * 288.80320 * 1 2 3 28 28 H 1.09006 * 109.46955 * 48.80647 * 1 2 3 29 29 H 1.08994 * 109.46915 * 168.79940 * 1 2 3 30 30 H 1.08998 * 109.47213 * 191.19377 * 3 2 1 31 31 H 1.08997 * 109.46972 * 311.20140 * 3 2 1 32 32 H 1.09002 * 109.46749 * 71.18823 * 3 2 1 33 33 H 1.00905 * 111.00721 * 280.48184 * 6 4 2 34 34 H 1.09004 * 109.46783 * 300.00564 * 7 6 4 35 35 H 1.09002 * 109.47086 * 59.99743 * 7 6 4 36 36 H 1.07993 * 119.96618 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.02994 * 180.26671 * 10 9 8 38 38 H 0.96997 * 120.00415 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.03521 * 179.97438 * 21 11 10 40 40 H 1.08001 * 119.96639 * 180.02562 * 22 21 11 41 41 H 1.08994 * 113.61600 * 89.15783 * 23 4 2 42 42 H 1.08991 * 113.61648 * 220.06642 * 23 4 2 43 43 H 0.96696 * 113.99663 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 1.4940 -1.7514 1.3517 6 7 2.7106 -0.2123 2.2121 7 6 2.7692 -1.0815 3.3949 8 6 3.3519 -0.3144 4.5538 9 6 4.7177 -0.3245 4.7711 10 6 5.2553 0.3821 5.8288 11 6 4.4219 1.0941 6.6815 12 8 4.9468 1.7855 7.7251 13 6 4.0975 2.5470 8.4440 14 1 3.0390 2.5237 8.2311 15 6 4.5831 3.3600 9.4567 16 7 5.8726 3.3888 9.7159 17 14 3.4066 4.4155 10.4523 18 1 2.4169 3.5442 11.1353 19 1 4.1703 5.1869 11.4658 20 1 2.6974 5.3550 9.5470 21 6 3.0502 1.0977 6.4640 22 6 2.5192 0.3933 5.4014 23 6 3.1928 -1.3159 0.0026 24 6 2.1461 -0.9300 -1.0584 25 1 1.4940 -1.7540 -1.3484 26 8 2.6954 -0.2359 -2.1803 27 1 -0.3634 0.3312 0.9727 28 1 -0.3633 0.6769 -0.7734 29 1 -0.3633 -1.0080 -0.1996 30 1 3.1942 1.3534 -0.1995 31 1 1.6414 2.0076 -0.7732 32 1 1.9598 1.8735 0.9728 33 1 3.6215 0.1629 1.9938 34 1 1.7637 -1.4162 3.6500 35 1 3.3963 -1.9466 3.1793 36 1 5.3649 -0.8823 4.1105 37 1 6.3224 0.3773 5.9954 38 1 6.2124 3.9578 10.4242 39 1 2.3993 1.6501 7.1256 40 1 1.4526 0.3960 5.2315 41 1 4.0725 -0.6723 0.0023 42 1 3.4432 -2.3766 0.0046 43 1 3.0841 -0.8156 -2.8496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129626006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:17 Heat of formation + Delta-G solvation = -57.679869 kcal Electronic energy + Delta-G solvation = -22688.405159 eV Core-core repulsion = 19312.748012 eV Total energy + Delta-G solvation = -3375.657147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17149 -40.69916 -38.52389 -36.60117 -34.93442 -34.16362 -31.78676 -31.50721 -30.38099 -28.27878 -27.52502 -25.78015 -23.72939 -23.62009 -23.35036 -21.97640 -19.82792 -19.38150 -18.78601 -18.29647 -16.75576 -16.45845 -16.21372 -16.14233 -15.81793 -15.61029 -15.48161 -15.15972 -14.68417 -14.47836 -14.33250 -14.14634 -13.75209 -13.55269 -13.53775 -13.05662 -13.00445 -12.92188 -12.85400 -12.43275 -12.39070 -12.37513 -12.14399 -12.08996 -11.64568 -11.55006 -11.16236 -11.05584 -10.77907 -10.54186 -9.75622 -9.18199 -8.86889 -8.46828 -6.14995 0.62267 0.70113 1.34802 1.45641 1.51097 2.18290 2.78991 3.08627 3.29490 3.53660 3.56859 3.64797 3.67543 3.96192 4.02975 4.08361 4.16224 4.22854 4.39647 4.50435 4.57997 4.61412 4.62965 4.72205 4.79057 4.85732 4.92205 4.96846 5.04306 5.11480 5.16547 5.18578 5.19958 5.26584 5.32515 5.49582 5.58451 5.60910 5.73682 5.84900 6.03685 6.20279 6.30365 6.50603 6.97963 6.98655 7.79288 8.76378 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.002807 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.757538 B = 9972.587148 C =10335.730309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.106 4.106 4 C 0.077 3.923 5 H 0.110 0.890 6 N -0.677 5.677 7 C 0.123 3.877 8 C -0.157 4.157 9 C -0.060 4.060 10 C -0.206 4.206 11 C 0.113 3.887 12 O -0.234 6.234 13 C -0.414 4.414 14 H 0.100 0.900 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.245 4.245 22 C -0.050 4.050 23 C -0.192 4.192 24 C 0.088 3.912 25 H 0.099 0.901 26 O -0.574 6.574 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.342 0.658 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 -11.405 -21.460 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 C -0.164 4.164 4 C -0.033 4.033 5 H 0.128 0.872 6 N -0.307 5.307 7 C -0.005 4.005 8 C -0.158 4.158 9 C -0.078 4.078 10 C -0.225 4.225 11 C 0.063 3.937 12 O -0.140 6.140 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.183 1.183 21 C -0.264 4.264 22 C -0.068 4.068 23 C -0.232 4.232 24 C 0.029 3.971 25 H 0.117 0.883 26 O -0.381 6.381 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.536 -10.500 -20.712 25.500 hybrid contribution 0.956 -0.226 0.350 1.043 sum -9.580 -10.726 -20.362 24.928 Atomic orbital electron populations 1.21704 0.93409 1.02202 1.01696 1.22185 0.95747 0.95513 0.93856 1.21164 0.99820 0.94719 1.00657 1.22934 0.96682 0.95521 0.88192 0.87173 1.60347 1.30353 1.36216 1.03807 1.20649 1.00443 0.92399 0.86966 1.19655 0.92887 1.03866 0.99387 1.20886 0.95115 0.96631 0.95210 1.20438 0.98912 1.04722 0.98453 1.19948 0.93320 0.92345 0.88104 1.83935 1.38228 1.54517 1.37352 1.21777 0.90881 1.21833 1.14542 0.88225 1.26585 0.98790 0.98456 0.98198 1.70175 1.14602 1.39526 1.31720 0.84662 0.76764 0.77516 0.77367 1.18080 1.19552 1.18257 1.21264 0.94204 1.07757 1.03202 1.20905 1.00008 0.93728 0.92195 1.24315 0.98438 1.02244 0.98169 1.23442 0.94626 0.94561 0.84502 0.88323 1.86514 1.79319 1.38600 1.33684 0.92645 0.92961 0.91277 0.93533 0.93647 0.92787 0.83868 0.89862 0.93399 0.83675 0.87084 0.91835 0.86637 0.84707 0.90285 0.90055 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.19 71.98 0.66 -1.40 16 2 C -0.07 -1.24 1.35 -51.65 -0.07 -1.30 16 3 C -0.11 -2.29 7.79 71.98 0.56 -1.73 16 4 C 0.08 1.24 3.61 45.44 0.16 1.40 16 5 H 0.11 1.51 7.84 -2.39 -0.02 1.49 16 6 N -0.68 -14.11 5.55 -492.85 -2.73 -16.85 16 7 C 0.12 2.66 5.66 85.56 0.48 3.15 16 8 C -0.16 -4.77 5.40 -19.83 -0.11 -4.87 16 9 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 10 C -0.21 -8.83 9.99 22.39 0.22 -8.61 16 11 C 0.11 5.74 6.65 22.58 0.15 5.89 16 12 O -0.23 -14.34 9.76 -22.67 -0.22 -14.56 16 13 C -0.41 -24.60 9.49 67.92 0.64 -23.96 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 15 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 16 N -0.92 -57.44 13.67 21.61 0.30 -57.14 16 17 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 C -0.25 -10.90 9.17 22.39 0.21 -10.69 16 22 C -0.05 -1.74 9.69 22.25 0.22 -1.53 16 23 C -0.19 -2.68 7.20 31.18 0.22 -2.45 16 24 C 0.09 1.20 4.63 31.18 0.14 1.35 16 25 H 0.10 0.96 7.96 -2.39 -0.02 0.94 16 26 O -0.57 -8.83 12.77 -148.98 -1.90 -10.73 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 0.82 7.94 -2.39 -0.02 0.80 16 30 H 0.05 1.05 7.20 -2.39 -0.02 1.03 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.31 7.77 -2.39 -0.02 1.29 16 33 H 0.34 7.57 8.08 -89.69 -0.72 6.84 16 34 H 0.08 1.65 8.07 -2.38 -0.02 1.64 16 35 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 41 H 0.08 1.32 7.35 -2.39 -0.02 1.31 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.39 2.60 9.12 -74.06 -0.68 1.93 16 Total: -1.00 -72.56 352.93 1.27 -71.29 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.38 Total: 29.83 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 4.18 Total: -47.38 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.44 Total: -73.99 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -2.12 Total: -25.30 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.56 1.27 -71.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129626006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.609 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds