Wall clock time and date at job start Tue Mar 31 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.85175 * 2 1 4 4 C 1.53787 * 113.61328 * 228.69220 * 2 1 3 5 5 H 1.08998 * 113.61075 * 156.33890 * 4 2 1 6 6 O 1.42894 * 113.61204 * 25.43517 * 4 2 1 7 7 C 1.53782 * 87.08312 * 270.88398 * 4 2 1 8 8 C 1.53783 * 87.08168 * 334.56871 * 7 4 2 9 9 H 1.08994 * 113.69011 * 270.87029 * 8 7 4 10 10 N 1.46898 * 113.61565 * 139.97823 * 8 7 4 11 11 C 1.46896 * 111.00044 * 107.50116 * 10 8 7 12 12 C 1.50703 * 109.47616 * 180.02562 * 11 10 8 13 13 C 1.38301 * 119.93131 * 89.99737 * 12 11 10 14 14 C 1.38098 * 120.06892 * 180.02562 * 13 12 11 15 15 C 1.38875 * 119.93063 * 359.97438 * 14 13 12 16 16 O 1.35755 * 120.06689 * 180.02562 * 15 14 13 17 17 C 1.34822 * 117.00073 * 5.53321 * 16 15 14 18 18 H 1.08004 * 120.00474 * 354.94658 * 17 16 15 19 19 C 1.38660 * 120.00298 * 174.94008 * 17 16 15 20 20 N 1.31556 * 119.99320 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46999 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47222 * 299.99956 * 21 19 17 24 24 H 1.48497 * 109.47585 * 60.00135 * 21 19 17 25 25 C 1.38883 * 119.86225 * 0.27186 * 15 14 13 26 26 C 1.38101 * 119.92844 * 359.45102 * 25 15 14 27 27 H 1.09002 * 109.46696 * 288.80445 * 1 2 3 28 28 H 1.08993 * 109.46781 * 48.80197 * 1 2 3 29 29 H 1.08999 * 109.47017 * 168.80531 * 1 2 3 30 30 H 1.08998 * 109.47193 * 191.19231 * 3 2 1 31 31 H 1.08998 * 109.47147 * 311.20094 * 3 2 1 32 32 H 1.09002 * 109.46580 * 71.19762 * 3 2 1 33 33 H 0.96702 * 114.00092 * 179.97438 * 6 4 2 34 34 H 1.08992 * 113.61400 * 220.01777 * 7 4 2 35 35 H 1.08999 * 113.61169 * 89.11171 * 7 4 2 36 36 H 1.00899 * 111.00039 * 231.45365 * 10 8 7 37 37 H 1.09000 * 109.47128 * 60.00016 * 11 10 8 38 38 H 1.08999 * 109.47532 * 300.00491 * 11 10 8 39 39 H 1.08001 * 119.96129 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.03432 * 179.97438 * 14 13 12 41 41 H 0.97008 * 119.99684 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.02924 * 179.72630 * 25 15 14 43 43 H 1.08000 * 119.96205 * 180.27275 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9302 -1.0585 5 1 3.1591 -0.6512 -1.3483 6 8 1.2919 -1.1666 -2.1794 7 6 2.0930 -2.0426 0.0019 8 6 2.1461 -0.9281 1.0602 9 1 3.1585 -0.6479 1.3507 10 7 1.2680 -1.1690 2.2130 11 6 2.0495 -1.5254 3.4047 12 6 1.1170 -1.7651 4.5640 13 6 0.6167 -3.0334 4.7963 14 6 -0.2385 -3.2561 5.8575 15 6 -0.5956 -2.2051 6.6921 16 8 -1.4357 -2.4211 7.7364 17 6 -1.7968 -3.6975 7.9777 18 1 -1.4863 -4.4830 7.3046 19 6 -2.5668 -4.0018 9.0899 20 7 -2.9454 -3.0449 9.9095 21 14 -3.0665 -5.7702 9.4245 22 1 -3.8811 -5.8282 10.6649 23 1 -3.8665 -6.2830 8.2832 24 1 -1.8500 -6.6054 9.5911 25 6 -0.0956 -0.9317 6.4531 26 6 0.7637 -0.7165 5.3936 27 1 -0.3633 0.3313 0.9729 28 1 -0.3632 0.6769 -0.7732 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3533 -0.1995 31 1 1.6415 2.0076 -0.7732 32 1 1.9600 1.8733 0.9729 33 1 1.6740 -1.7506 -2.8488 34 1 2.9717 -2.6875 0.0025 35 1 1.1569 -2.6010 0.0025 36 1 0.6794 -0.3694 2.3925 37 1 2.7315 -0.7109 3.6489 38 1 2.6221 -2.4314 3.2062 39 1 0.8951 -3.8503 4.1472 40 1 -0.6292 -4.2466 6.0382 41 1 -3.4838 -3.2578 10.6879 42 1 -0.3750 -0.1115 7.0978 43 1 1.1564 0.2727 5.2099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129626627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:27 Heat of formation + Delta-G solvation = -34.755316 kcal Electronic energy + Delta-G solvation = -22674.039244 eV Core-core repulsion = 19299.376180 eV Total energy + Delta-G solvation = -3374.663064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39870 -39.00493 -36.91056 -35.76799 -33.78015 -32.22624 -30.69500 -30.15041 -29.16975 -27.57677 -25.67247 -24.47745 -23.02446 -22.31447 -21.93678 -20.41933 -18.47673 -17.95890 -17.72997 -16.91371 -15.85571 -15.32515 -15.26562 -14.62534 -14.51097 -14.33410 -14.05890 -13.57251 -13.48856 -13.34141 -13.23130 -12.72251 -12.65354 -12.54710 -12.25941 -12.16757 -11.81614 -11.73955 -11.54813 -11.24402 -11.05085 -10.87620 -10.72389 -10.63489 -10.59039 -10.42732 -10.24302 -9.83254 -9.31381 -8.81642 -8.33188 -8.14330 -7.16260 -6.43701 -4.02417 2.24314 2.31533 3.14503 3.15264 3.18151 3.88644 3.98200 4.18276 4.23363 4.54206 4.63140 4.66230 4.82891 5.02541 5.11734 5.15914 5.26088 5.27620 5.39990 5.43583 5.48869 5.56480 5.72681 5.75978 5.78471 5.82316 5.85295 5.90594 5.92330 6.06762 6.22261 6.23700 6.39744 6.45523 6.72321 6.93360 7.05716 7.18322 7.23782 7.41830 7.44091 7.45957 7.51665 7.85331 8.01569 9.02009 9.72376 10.74356 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.002762 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.280455 B =10136.785140 C =10487.264029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.140 4.140 4 C 0.082 3.918 5 H 0.077 0.923 6 O -0.554 6.554 7 C -0.154 4.154 8 C 0.067 3.933 9 H 0.071 0.929 10 N -0.667 5.667 11 C 0.117 3.883 12 C -0.185 4.185 13 C -0.048 4.048 14 C -0.235 4.235 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.278 1.278 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.194 4.194 26 C -0.069 4.069 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.374 0.626 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.344 0.656 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 4.257 -19.476 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.197 4.197 4 C 0.022 3.978 5 H 0.094 0.906 6 O -0.359 6.359 7 C -0.193 4.193 8 C -0.044 4.044 9 H 0.089 0.911 10 N -0.299 5.299 11 C -0.011 4.011 12 C -0.186 4.186 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.203 1.203 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.213 4.213 26 C -0.088 4.088 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.221 0.779 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.164 0.836 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.468 4.182 -18.901 22.007 hybrid contribution 0.604 -0.478 0.145 0.783 sum 11.072 3.704 -18.756 22.093 Atomic orbital electron populations 1.21279 0.91682 1.02887 1.01052 1.22276 0.97545 0.93852 0.94152 1.21798 1.00208 0.95606 1.02120 1.23373 0.92862 0.96589 0.84935 0.90560 1.86541 1.45225 1.71047 1.33073 1.23739 1.03054 0.97094 0.95394 1.22847 0.95508 0.95810 0.90203 0.91090 1.60711 1.22037 1.43157 1.04035 1.20675 0.93316 0.99377 0.87698 1.19113 1.05934 0.94229 0.99334 1.20565 0.95073 0.95669 0.95412 1.21165 1.05285 1.00020 0.98999 1.19398 0.88854 0.93306 0.88245 1.83973 1.53199 1.29785 1.41190 1.21286 1.33434 0.81930 1.10165 0.89108 1.25286 0.96462 0.99953 0.94804 1.70034 1.34226 1.32354 1.13254 0.85784 0.78919 0.80461 0.78294 1.20289 1.19475 1.19506 1.20161 1.03873 0.95501 1.01791 1.20470 0.96783 0.97221 0.94309 0.92416 0.92735 0.91444 0.92717 0.92215 0.92260 0.77944 0.91892 0.88341 0.83568 0.95512 0.91291 0.87537 0.85635 0.91986 0.86657 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 7.84 37.16 0.29 -0.91 16 2 C -0.08 -0.74 1.26 -153.69 -0.19 -0.93 16 3 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 4 C 0.08 0.71 4.63 -25.91 -0.12 0.59 16 5 H 0.08 0.55 7.97 -51.93 -0.41 0.13 16 6 O -0.55 -5.02 12.76 -35.23 -0.45 -5.47 16 7 C -0.15 -1.50 7.36 -25.92 -0.19 -1.69 16 8 C 0.07 0.68 3.59 -66.90 -0.24 0.44 16 9 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 10 N -0.67 -8.29 6.06 -107.13 -0.65 -8.94 16 11 C 0.12 1.58 5.65 -4.98 -0.03 1.55 16 12 C -0.18 -3.14 5.40 -104.58 -0.56 -3.70 16 13 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 14 C -0.24 -5.18 9.17 -39.40 -0.36 -5.54 16 15 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 16 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 17 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 18 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 26 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 27 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.82 7.18 -51.93 -0.37 0.44 16 30 H 0.05 0.40 7.95 -51.93 -0.41 -0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.37 1.80 9.12 45.56 0.42 2.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.14 7.65 -51.93 -0.40 0.74 16 36 H 0.34 4.34 6.92 -39.29 -0.27 4.06 16 37 H 0.03 0.33 8.07 -51.93 -0.42 -0.09 16 38 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -31.23 351.60 -8.06 -39.29 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.71 Total: 8.71 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -2.29 Total: -24.64 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.11 Total: -33.69 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.45 Total: -10.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.23 -8.06 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129626627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.539 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds