Wall clock time and date at job start Tue Mar 31 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.85175 * 2 1 4 4 C 1.53787 * 113.61328 * 228.69220 * 2 1 3 5 5 H 1.08998 * 113.61075 * 156.33890 * 4 2 1 6 6 O 1.42894 * 113.61204 * 25.43517 * 4 2 1 7 7 C 1.53782 * 87.08312 * 270.88398 * 4 2 1 8 8 C 1.53783 * 87.08168 * 334.56871 * 7 4 2 9 9 H 1.08994 * 113.69011 * 270.87029 * 8 7 4 10 10 N 1.46898 * 113.61565 * 139.97823 * 8 7 4 11 11 C 1.46896 * 111.00044 * 107.50116 * 10 8 7 12 12 C 1.50703 * 109.47616 * 180.02562 * 11 10 8 13 13 C 1.38301 * 119.93131 * 89.99737 * 12 11 10 14 14 C 1.38098 * 120.06892 * 180.02562 * 13 12 11 15 15 C 1.38875 * 119.93063 * 359.97438 * 14 13 12 16 16 O 1.35755 * 120.06689 * 180.02562 * 15 14 13 17 17 C 1.34822 * 117.00073 * 5.53321 * 16 15 14 18 18 H 1.08004 * 120.00474 * 354.94658 * 17 16 15 19 19 C 1.38660 * 120.00298 * 174.94008 * 17 16 15 20 20 N 1.31556 * 119.99320 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00193 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46999 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47222 * 299.99956 * 21 19 17 24 24 H 1.48497 * 109.47585 * 60.00135 * 21 19 17 25 25 C 1.38883 * 119.86225 * 0.27186 * 15 14 13 26 26 C 1.38101 * 119.92844 * 359.45102 * 25 15 14 27 27 H 1.09002 * 109.46696 * 288.80445 * 1 2 3 28 28 H 1.08993 * 109.46781 * 48.80197 * 1 2 3 29 29 H 1.08999 * 109.47017 * 168.80531 * 1 2 3 30 30 H 1.08998 * 109.47193 * 191.19231 * 3 2 1 31 31 H 1.08998 * 109.47147 * 311.20094 * 3 2 1 32 32 H 1.09002 * 109.46580 * 71.19762 * 3 2 1 33 33 H 0.96702 * 114.00092 * 179.97438 * 6 4 2 34 34 H 1.08992 * 113.61400 * 220.01777 * 7 4 2 35 35 H 1.08999 * 113.61169 * 89.11171 * 7 4 2 36 36 H 1.00899 * 111.00039 * 231.45365 * 10 8 7 37 37 H 1.09000 * 109.47128 * 60.00016 * 11 10 8 38 38 H 1.08999 * 109.47532 * 300.00491 * 11 10 8 39 39 H 1.08001 * 119.96129 * 0.02562 * 13 12 11 40 40 H 1.07999 * 120.03432 * 179.97438 * 14 13 12 41 41 H 0.97008 * 119.99684 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.02924 * 179.72630 * 25 15 14 43 43 H 1.08000 * 119.96205 * 180.27275 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9302 -1.0585 5 1 3.1591 -0.6512 -1.3483 6 8 1.2919 -1.1666 -2.1794 7 6 2.0930 -2.0426 0.0019 8 6 2.1461 -0.9281 1.0602 9 1 3.1585 -0.6479 1.3507 10 7 1.2680 -1.1690 2.2130 11 6 2.0495 -1.5254 3.4047 12 6 1.1170 -1.7651 4.5640 13 6 0.6167 -3.0334 4.7963 14 6 -0.2385 -3.2561 5.8575 15 6 -0.5956 -2.2051 6.6921 16 8 -1.4357 -2.4211 7.7364 17 6 -1.7968 -3.6975 7.9777 18 1 -1.4863 -4.4830 7.3046 19 6 -2.5668 -4.0018 9.0899 20 7 -2.9454 -3.0449 9.9095 21 14 -3.0665 -5.7702 9.4245 22 1 -3.8811 -5.8282 10.6649 23 1 -3.8665 -6.2830 8.2832 24 1 -1.8500 -6.6054 9.5911 25 6 -0.0956 -0.9317 6.4531 26 6 0.7637 -0.7165 5.3936 27 1 -0.3633 0.3313 0.9729 28 1 -0.3632 0.6769 -0.7732 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3533 -0.1995 31 1 1.6415 2.0076 -0.7732 32 1 1.9600 1.8733 0.9729 33 1 1.6740 -1.7506 -2.8488 34 1 2.9717 -2.6875 0.0025 35 1 1.1569 -2.6010 0.0025 36 1 0.6794 -0.3694 2.3925 37 1 2.7315 -0.7109 3.6489 38 1 2.6221 -2.4314 3.2062 39 1 0.8951 -3.8503 4.1472 40 1 -0.6292 -4.2466 6.0382 41 1 -3.4838 -3.2578 10.6879 42 1 -0.3750 -0.1115 7.0978 43 1 1.1564 0.2727 5.2099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129626627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:26 Heat of formation + Delta-G solvation = -56.865482 kcal Electronic energy + Delta-G solvation = -22674.998012 eV Core-core repulsion = 19299.376180 eV Total energy + Delta-G solvation = -3375.621833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17806 -40.70619 -38.53241 -36.61942 -34.91523 -34.15519 -31.78241 -31.50724 -30.54575 -28.34485 -27.53847 -25.81181 -23.83420 -23.58876 -23.14729 -21.95605 -19.83301 -19.27628 -18.78214 -18.41618 -16.90353 -16.45535 -16.21205 -16.14422 -15.91135 -15.70901 -15.49637 -15.03706 -14.75397 -14.61988 -14.30192 -14.08121 -13.81174 -13.61317 -13.39310 -13.16151 -12.98336 -12.93001 -12.80683 -12.47891 -12.39604 -12.32244 -12.15062 -12.04626 -11.78505 -11.37459 -11.16765 -11.06481 -10.78481 -10.52070 -9.76342 -9.27983 -8.88505 -8.47127 -6.15220 0.61674 0.69450 1.34661 1.45438 1.50964 2.18151 2.78791 3.09662 3.29878 3.46836 3.48767 3.53435 3.88885 3.94186 4.01352 4.07903 4.14260 4.22578 4.32614 4.45733 4.55418 4.60447 4.61919 4.74465 4.77719 4.82795 4.85844 5.00601 5.03935 5.10729 5.11107 5.16332 5.18114 5.27146 5.31774 5.49144 5.56429 5.58672 5.73073 5.84031 6.03333 6.20241 6.30037 6.49728 6.97642 6.99521 7.78865 8.76063 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.002762 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.280455 B =10136.785140 C =10487.264029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.089 3.911 5 H 0.100 0.900 6 O -0.573 6.573 7 C -0.154 4.154 8 C 0.068 3.932 9 H 0.088 0.912 10 N -0.678 5.678 11 C 0.122 3.878 12 C -0.157 4.157 13 C -0.050 4.050 14 C -0.245 4.245 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.271 1.271 23 H -0.258 1.258 24 H -0.257 1.257 25 C -0.205 4.205 26 C -0.060 4.060 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.392 0.608 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.342 0.658 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.112 0.888 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 4.120 -22.149 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.082 4.082 3 C -0.194 4.194 4 C 0.029 3.971 5 H 0.118 0.882 6 O -0.381 6.381 7 C -0.193 4.193 8 C -0.042 4.042 9 H 0.105 0.895 10 N -0.311 5.311 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.264 4.264 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.195 1.195 23 H -0.182 1.182 24 H -0.181 1.181 25 C -0.224 4.224 26 C -0.078 4.078 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.163 0.837 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.076 4.052 -21.643 25.609 hybrid contribution 0.012 -0.284 0.657 0.716 sum 13.088 3.768 -20.986 25.018 Atomic orbital electron populations 1.21212 0.93118 1.01578 1.00697 1.22281 0.96453 0.94894 0.94588 1.21777 1.01014 0.94529 1.02106 1.23389 0.93641 0.95457 0.84569 0.88243 1.86499 1.46175 1.71698 1.33716 1.23689 1.02408 0.97319 0.95907 1.22928 0.95756 0.96233 0.89248 0.89458 1.60641 1.22658 1.43566 1.04198 1.20665 0.92547 1.00881 0.86482 1.19642 1.03854 0.93024 0.99294 1.20893 0.94009 0.97519 0.94482 1.21253 1.06185 0.99107 0.99877 1.19952 0.89993 0.95307 0.88434 1.83935 1.56094 1.30182 1.43770 1.21778 1.33959 0.82437 1.10909 0.88249 1.26589 0.96156 1.05085 0.94189 1.70181 1.36279 1.35114 1.14407 0.84659 0.78977 0.74152 0.78504 1.19527 1.18216 1.18134 1.20441 1.04579 0.94378 1.03052 1.20887 0.95004 0.99387 0.92524 0.92839 0.92876 0.93312 0.91208 0.92387 0.92294 0.75884 0.90642 0.90659 0.83728 0.93308 0.90212 0.84873 0.86647 0.91826 0.86972 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 7.84 71.98 0.56 -1.62 16 2 C -0.08 -1.32 1.26 -51.65 -0.07 -1.38 16 3 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 4 C 0.09 1.26 4.63 31.12 0.14 1.40 16 5 H 0.10 0.98 7.97 -2.39 -0.02 0.96 16 6 O -0.57 -9.06 12.76 -148.98 -1.90 -10.96 16 7 C -0.15 -2.54 7.36 31.12 0.23 -2.31 16 8 C 0.07 1.14 3.59 45.44 0.16 1.30 16 9 H 0.09 1.23 7.82 -2.39 -0.02 1.22 16 10 N -0.68 -14.53 6.06 -492.86 -2.98 -17.51 16 11 C 0.12 2.73 5.65 85.56 0.48 3.22 16 12 C -0.16 -4.84 5.40 -19.83 -0.11 -4.95 16 13 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 14 C -0.24 -10.97 9.17 22.39 0.21 -10.76 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.32 9.76 -22.72 -0.22 -14.54 16 17 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16 18 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 20 N -0.92 -57.38 13.67 21.61 0.30 -57.08 16 21 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 25 C -0.21 -8.80 9.99 22.39 0.22 -8.58 16 26 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 27 H 0.05 1.09 6.72 -2.39 -0.02 1.07 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.15 7.18 -2.39 -0.02 1.13 16 30 H 0.07 0.72 7.95 -2.39 -0.02 0.70 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.39 2.81 9.12 -74.06 -0.68 2.14 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.61 7.65 -2.39 -0.02 1.60 16 36 H 0.34 7.57 6.92 -89.69 -0.62 6.95 16 37 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 38 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 39 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 41 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 42 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 43 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -72.64 351.60 1.14 -71.51 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.27 Total: 30.17 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 4.20 Total: -47.11 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.69 Total: -74.60 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -2.12 Total: -25.51 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.64 1.14 -71.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129626627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds