Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38282 * 119.94632 * 2 1 4 4 C 1.38121 * 120.05845 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94246 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05870 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47242 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00175 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99798 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00139 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47461 * 59.99755 * 18 16 14 20 20 H 1.48501 * 109.47201 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47063 * 299.99553 * 18 16 14 22 22 C 1.38715 * 119.88999 * 0.27515 * 5 4 3 23 23 C 1.50697 * 120.02923 * 179.72445 * 22 5 4 24 24 C 1.38164 * 119.93880 * 359.40263 * 22 5 4 25 25 H 1.09003 * 109.46874 * 90.00479 * 1 2 3 26 26 H 1.08999 * 109.47586 * 210.00475 * 1 2 3 27 27 H 1.09004 * 109.47443 * 330.00381 * 1 2 3 28 28 H 1.08007 * 119.97230 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.02792 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 31 31 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 32 32 H 0.96995 * 120.00267 * 0.02562 * 10 8 7 33 33 H 1.09006 * 109.47300 * 299.99891 * 11 10 8 34 34 H 1.08999 * 109.47172 * 60.00041 * 11 10 8 35 35 H 1.08996 * 109.47254 * 299.99977 * 12 11 10 36 36 H 1.08999 * 109.47046 * 59.99881 * 12 11 10 37 37 H 1.08998 * 109.47592 * 300.00144 * 13 12 11 38 38 H 1.08999 * 109.47084 * 60.00043 * 13 12 11 39 39 H 0.97005 * 119.99450 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.47246 * 89.99992 * 23 22 5 41 41 H 1.09000 * 109.47282 * 209.99769 * 23 22 5 42 42 H 1.08999 * 109.47028 * 329.99951 * 23 22 5 43 43 H 1.08003 * 119.96792 * 180.31516 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2387 -0.0451 0.0051 10 7 8.5962 2.1445 0.0060 11 6 10.0485 1.9525 0.0082 12 6 10.7432 3.3157 0.0098 13 6 12.2600 3.1152 0.0127 14 6 12.9442 4.4580 0.0136 15 1 12.3560 5.3637 0.0128 16 6 14.3211 4.5301 0.0157 17 7 15.0373 3.4271 0.0172 18 14 15.1691 6.1944 0.0176 19 1 14.7684 6.9529 1.2298 20 1 16.6413 5.9998 0.0190 21 1 14.7719 6.9538 -1.1953 22 6 3.5786 -1.2007 -0.0058 23 6 4.3302 -2.5068 -0.0121 24 6 2.1970 -1.1979 0.0004 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6559 2.1328 -0.0004 29 1 4.1171 2.1370 0.0001 30 1 5.9891 1.8309 -0.8865 31 1 5.9876 1.8293 0.8935 32 1 8.2255 3.0408 0.0062 33 1 10.3402 1.3955 0.8986 34 1 10.3427 1.3955 -0.8814 35 1 10.4517 3.8731 -0.8804 36 1 10.4489 3.8724 0.8995 37 1 12.5512 2.5580 0.9030 38 1 12.5545 2.5584 -0.8769 39 1 16.0060 3.4779 0.0183 40 1 4.5111 -2.8270 1.0141 41 1 3.7402 -3.2630 -0.5299 42 1 5.2830 -2.3753 -0.5249 43 1 1.6557 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171508579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -76.032931 kcal Electronic energy + Delta-G solvation = -21672.675750 eV Core-core repulsion = 18296.222754 eV Total energy + Delta-G solvation = -3376.452996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69887 -39.45152 -37.74644 -35.45422 -33.52104 -33.36765 -31.88588 -31.41848 -29.11380 -27.47010 -26.65324 -25.99462 -23.30309 -22.32944 -20.95309 -20.83283 -20.03483 -18.39407 -17.28303 -16.59215 -16.39737 -16.09712 -15.49512 -15.11688 -15.06366 -14.59128 -14.45646 -14.25955 -13.80133 -13.69493 -13.44979 -13.28006 -12.95117 -12.66620 -12.31111 -12.18090 -12.12430 -11.88901 -11.71869 -11.57609 -11.11837 -11.09493 -10.90806 -10.78009 -10.65252 -9.94150 -9.91187 -9.42610 -9.16426 -9.10001 -8.90285 -8.39435 -8.23884 -6.04071 -4.07558 1.03502 1.12769 2.48291 2.59167 3.30256 3.35303 3.36867 3.41925 3.62899 4.40902 4.42753 4.48985 4.59682 4.61319 4.76536 4.81043 4.94827 4.99406 5.16042 5.27504 5.31560 5.35818 5.39516 5.56018 5.59216 5.64353 5.65105 5.71455 6.00146 6.05091 6.09795 6.20033 6.31267 6.36055 6.50907 6.53811 6.75022 6.94537 7.11097 7.55600 7.60052 7.72273 7.94037 8.23321 8.35029 8.98749 9.56688 11.07078 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041800 B = 0.002047 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.691653 B =13675.550039 C =14303.580703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.086 4.086 4 C -0.203 4.203 5 C 0.124 3.876 6 O -0.285 6.285 7 C 0.041 3.959 8 C 0.510 3.490 9 O -0.520 6.520 10 N -0.722 5.722 11 C 0.118 3.882 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.084 4.084 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.244 -5.590 -0.062 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.222 4.222 5 C 0.078 3.922 6 O -0.197 6.197 7 C -0.038 4.038 8 C 0.293 3.707 9 O -0.395 6.395 10 N -0.375 5.375 11 C -0.004 4.004 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.109 4.109 23 C -0.165 4.165 24 C -0.102 4.102 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.555 -6.660 -0.062 29.322 hybrid contribution 0.357 1.746 0.006 1.782 sum -28.198 -4.914 -0.055 28.623 Atomic orbital electron populations 1.20712 0.91101 1.02593 1.02120 1.19808 0.96167 0.92997 1.03455 1.20789 0.93207 0.97687 0.98766 1.21245 0.95483 0.96885 1.08591 1.18888 0.82107 0.93874 0.97309 1.86163 1.15969 1.29212 1.88396 1.22520 0.91726 0.85895 1.03692 1.19961 0.87478 0.85572 0.77655 1.90752 1.77228 1.23608 1.47937 1.46058 1.08000 1.08374 1.75036 1.21704 0.76423 1.00029 1.02277 1.21899 0.99728 0.93286 1.00959 1.19032 0.87236 0.97414 0.97736 1.21153 0.91381 0.92488 1.51224 0.92686 1.25035 0.97664 0.96536 0.95239 1.69959 1.05967 1.26924 1.50331 0.86630 0.78401 0.84209 0.78572 1.20248 1.21251 1.20254 1.19291 0.93206 0.93661 1.04733 1.20647 1.00416 0.92868 1.02564 1.20767 0.92291 0.97852 0.99320 0.91448 0.91708 0.91734 0.85838 0.85328 0.89076 0.89067 0.76673 0.91527 0.91518 0.92630 0.92634 0.96215 0.96217 0.92839 0.91241 0.91761 0.90597 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.12 -1.02 5.88 -104.60 -0.62 -1.64 16 3 C -0.09 -0.72 9.69 -39.61 -0.38 -1.10 16 4 C -0.20 -1.90 9.04 -39.43 -0.36 -2.25 16 5 C 0.12 1.42 6.66 -39.22 -0.26 1.16 16 6 O -0.29 -3.75 8.72 -39.35 -0.34 -4.10 16 7 C 0.04 0.43 5.22 36.01 0.19 0.62 16 8 C 0.51 7.39 7.91 -10.98 -0.09 7.31 16 9 O -0.52 -10.06 16.50 -14.35 -0.24 -10.30 16 10 N -0.72 -9.68 5.56 -60.29 -0.33 -10.02 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 12 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.11 -1.16 5.89 -104.47 -0.62 -1.77 16 23 C -0.11 -1.07 9.79 36.00 0.35 -0.72 16 24 C -0.08 -0.75 9.35 -39.61 -0.37 -1.12 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 28 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 29 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 30 H 0.09 0.72 7.66 -51.93 -0.40 0.33 16 31 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 32 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.08 0.89 7.53 -51.93 -0.39 0.49 16 43 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -33.78 364.03 -9.11 -42.89 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.89 Total: -1.34 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.50 Total: -13.02 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.40 Total: -35.90 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.58 Total: -14.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.78 -9.11 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.147 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds