Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38282 * 119.94632 * 2 1 4 4 C 1.38121 * 120.05845 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94246 * 0.02562 * 4 3 2 6 6 O 1.35905 * 120.05870 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50704 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99890 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99752 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47293 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47242 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00175 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99798 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00139 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47461 * 59.99755 * 18 16 14 20 20 H 1.48501 * 109.47201 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47063 * 299.99553 * 18 16 14 22 22 C 1.38715 * 119.88999 * 0.27515 * 5 4 3 23 23 C 1.50697 * 120.02923 * 179.72445 * 22 5 4 24 24 C 1.38164 * 119.93880 * 359.40263 * 22 5 4 25 25 H 1.09003 * 109.46874 * 90.00479 * 1 2 3 26 26 H 1.08999 * 109.47586 * 210.00475 * 1 2 3 27 27 H 1.09004 * 109.47443 * 330.00381 * 1 2 3 28 28 H 1.08007 * 119.97230 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.02792 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47352 * 299.99771 * 7 6 5 31 31 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 32 32 H 0.96995 * 120.00267 * 0.02562 * 10 8 7 33 33 H 1.09006 * 109.47300 * 299.99891 * 11 10 8 34 34 H 1.08999 * 109.47172 * 60.00041 * 11 10 8 35 35 H 1.08996 * 109.47254 * 299.99977 * 12 11 10 36 36 H 1.08999 * 109.47046 * 59.99881 * 12 11 10 37 37 H 1.08998 * 109.47592 * 300.00144 * 13 12 11 38 38 H 1.08999 * 109.47084 * 60.00043 * 13 12 11 39 39 H 0.97005 * 119.99450 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.47246 * 89.99992 * 23 22 5 41 41 H 1.09000 * 109.47282 * 209.99769 * 23 22 5 42 42 H 1.08999 * 109.47028 * 329.99951 * 23 22 5 43 43 H 1.08003 * 119.96792 * 180.31516 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2387 -0.0451 0.0051 10 7 8.5962 2.1445 0.0060 11 6 10.0485 1.9525 0.0082 12 6 10.7432 3.3157 0.0098 13 6 12.2600 3.1152 0.0127 14 6 12.9442 4.4580 0.0136 15 1 12.3560 5.3637 0.0128 16 6 14.3211 4.5301 0.0157 17 7 15.0373 3.4271 0.0172 18 14 15.1691 6.1944 0.0176 19 1 14.7684 6.9529 1.2298 20 1 16.6413 5.9998 0.0190 21 1 14.7719 6.9538 -1.1953 22 6 3.5786 -1.2007 -0.0058 23 6 4.3302 -2.5068 -0.0121 24 6 2.1970 -1.1979 0.0004 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6559 2.1328 -0.0004 29 1 4.1171 2.1370 0.0001 30 1 5.9891 1.8309 -0.8865 31 1 5.9876 1.8293 0.8935 32 1 8.2255 3.0408 0.0062 33 1 10.3402 1.3955 0.8986 34 1 10.3427 1.3955 -0.8814 35 1 10.4517 3.8731 -0.8804 36 1 10.4489 3.8724 0.8995 37 1 12.5512 2.5580 0.9030 38 1 12.5545 2.5584 -0.8769 39 1 16.0060 3.4779 0.0183 40 1 4.5111 -2.8270 1.0141 41 1 3.7402 -3.2630 -0.5299 42 1 5.2830 -2.3753 -0.5249 43 1 1.6557 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171508579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -96.284394 kcal Electronic energy + Delta-G solvation = -21673.553920 eV Core-core repulsion = 18296.222754 eV Total energy + Delta-G solvation = -3377.331165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52287 -40.52705 -38.55574 -36.96773 -35.23187 -34.18434 -33.16240 -32.49243 -30.25457 -28.22164 -28.08134 -26.79222 -24.95078 -23.21787 -22.35546 -21.62061 -21.35653 -19.16641 -18.62302 -18.14452 -17.51039 -17.11419 -16.61208 -16.41571 -16.38187 -15.77624 -15.33685 -15.22621 -14.93373 -14.57474 -14.25740 -14.09971 -13.98656 -13.79735 -13.71263 -13.54728 -13.33053 -12.78755 -12.72139 -12.69303 -12.56150 -12.42618 -12.21384 -11.79757 -11.77678 -11.67680 -11.57543 -11.26335 -10.91443 -10.54801 -10.19568 -9.75840 -8.94037 -8.19368 -6.31065 0.37812 0.44777 1.41851 1.44930 1.45749 1.52159 1.54417 2.41722 2.67702 2.76015 3.14353 3.56154 3.83318 3.89584 4.00658 4.07207 4.07656 4.14831 4.20991 4.36385 4.39396 4.53459 4.56432 4.68782 4.76695 4.80403 4.91254 4.92912 4.95145 5.02162 5.16457 5.17207 5.33726 5.35661 5.37934 5.49560 5.51728 5.70087 5.70178 5.83998 5.87898 6.21429 6.34684 6.51868 6.86475 7.14272 7.38588 8.92422 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041800 B = 0.002047 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.691653 B =13675.550039 C =14303.580703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.205 4.205 5 C 0.096 3.904 6 O -0.318 6.318 7 C 0.047 3.953 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.706 5.706 11 C 0.130 3.870 12 C -0.101 4.101 13 C 0.021 3.979 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.132 4.132 23 C -0.105 4.105 24 C -0.090 4.090 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.421 0.579 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.071 0.929 37 H -0.008 1.008 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.006 -3.047 -0.050 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.223 4.223 5 C 0.052 3.948 6 O -0.231 6.231 7 C -0.031 4.031 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.360 5.360 11 C 0.006 3.994 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.579 4.579 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.108 4.108 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.258 0.742 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -31.365 -4.068 -0.049 31.628 hybrid contribution 1.149 0.911 0.001 1.466 sum -30.217 -3.157 -0.048 30.381 Atomic orbital electron populations 1.20764 0.89145 1.03582 1.02914 1.20206 0.97685 0.92759 1.02066 1.21164 0.93052 0.98825 0.97928 1.21524 0.96098 0.96907 1.07807 1.19146 0.81466 0.95058 0.99158 1.86109 1.17233 1.30636 1.89130 1.22591 0.88124 0.85730 1.06676 1.20732 0.89380 0.84575 0.75952 1.90732 1.78525 1.25880 1.50510 1.45754 1.06267 1.09578 1.74366 1.21269 0.78738 0.98571 1.00796 1.21597 0.95421 0.94406 1.02443 1.18962 0.91620 0.95994 0.95066 1.21657 0.92030 0.93716 1.50526 0.91348 1.26046 0.98724 1.00666 0.94816 1.70116 1.06228 1.29568 1.51617 0.85455 0.76865 0.79160 0.79278 1.18983 1.21302 1.18993 1.19542 0.94205 0.93697 1.05796 1.20596 0.99527 0.93698 1.02327 1.21017 0.91636 0.99175 0.98993 0.90633 0.90939 0.90616 0.83371 0.83120 0.85863 0.85855 0.74152 0.93199 0.93190 0.91020 0.91023 0.99009 0.99015 0.92859 0.91453 0.89892 0.93164 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.23 0.71 -0.17 16 2 C -0.13 -1.79 5.88 -19.85 -0.12 -1.91 16 3 C -0.09 -1.27 9.69 22.25 0.22 -1.05 16 4 C -0.20 -3.33 9.04 22.36 0.20 -3.13 16 5 C 0.10 2.14 6.66 22.51 0.15 2.29 16 6 O -0.32 -8.33 8.72 -73.44 -0.64 -8.97 16 7 C 0.05 0.90 5.22 71.24 0.37 1.27 16 8 C 0.51 14.49 7.91 87.66 0.69 15.18 16 9 O -0.58 -23.19 16.50 16.03 0.26 -22.92 16 10 N -0.71 -18.01 5.56 -463.06 -2.57 -20.59 16 11 C 0.13 4.48 5.67 86.38 0.49 4.97 16 12 C -0.10 -3.74 5.27 30.59 0.16 -3.57 16 13 C 0.02 1.10 4.97 29.85 0.15 1.24 16 14 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 18 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C -0.13 -2.79 5.89 -19.77 -0.12 -2.91 16 23 C -0.10 -2.17 9.79 71.23 0.70 -1.47 16 24 C -0.09 -1.48 9.35 22.25 0.21 -1.27 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.07 0.47 8.08 -2.38 -0.02 0.45 16 28 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 30 H 0.12 1.56 7.66 -2.39 -0.02 1.55 16 31 H 0.12 1.57 7.66 -2.39 -0.02 1.55 16 32 H 0.42 7.16 8.47 -92.71 -0.79 6.37 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 40 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 42 H 0.05 1.27 7.53 -2.39 -0.02 1.25 16 43 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -76.43 364.03 4.08 -72.35 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.21 Total: 11.38 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.51 Total: -19.95 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.29 Total: -77.35 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.38 Total: -31.90 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.43 4.08 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171508579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.937 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds