Wall clock time and date at job start Tue Mar 31 2020 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.94687 * 2 1 4 4 C 1.38143 * 120.05274 * 179.72236 * 3 2 1 5 5 C 1.38725 * 119.94837 * 0.28135 * 4 3 2 6 6 O 1.35899 * 120.05713 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00167 * 5.43263 * 6 5 4 8 8 H 1.09001 * 109.46591 * 35.04169 * 7 6 5 9 9 C 1.52993 * 109.47250 * 275.04333 * 7 6 5 10 10 C 1.50701 * 109.47038 * 155.03952 * 7 6 5 11 11 O 1.21283 * 120.00355 * 5.00060 * 10 7 6 12 12 N 1.34775 * 119.99635 * 185.00391 * 10 7 6 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 7 14 14 C 1.53003 * 109.47170 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46789 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46684 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00429 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00199 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47161 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47502 * 119.99372 * 20 18 16 23 23 H 1.48501 * 109.47082 * 239.99932 * 20 18 16 24 24 C 1.38739 * 119.88960 * 359.97438 * 5 4 3 25 25 C 1.38144 * 119.94120 * 0.02562 * 24 5 4 26 26 H 1.09006 * 109.47127 * 89.99853 * 1 2 3 27 27 H 1.08998 * 109.47128 * 209.99670 * 1 2 3 28 28 H 1.08996 * 109.46901 * 330.00130 * 1 2 3 29 29 H 1.08000 * 119.96859 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.02507 * 180.29453 * 4 3 2 31 31 H 1.09001 * 109.47329 * 180.02562 * 9 7 6 32 32 H 1.09005 * 109.46985 * 299.99951 * 9 7 6 33 33 H 1.08999 * 109.47191 * 59.99741 * 9 7 6 34 34 H 0.96994 * 120.00500 * 359.97438 * 12 10 7 35 35 H 1.09002 * 109.47359 * 299.99906 * 13 12 10 36 36 H 1.09005 * 109.47163 * 59.99575 * 13 12 10 37 37 H 1.08992 * 109.47338 * 299.99861 * 14 13 12 38 38 H 1.08995 * 109.46714 * 60.00202 * 14 13 12 39 39 H 1.09001 * 109.47090 * 299.99825 * 15 14 13 40 40 H 1.08995 * 109.47354 * 60.00562 * 15 14 13 41 41 H 0.97000 * 120.00176 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.02853 * 180.02562 * 24 5 4 43 43 H 1.07998 * 119.97152 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2006 0.0058 5 6 4.2734 -0.0001 0.0057 6 8 5.6324 -0.0002 0.0109 7 6 6.2808 1.2671 0.1368 8 1 5.6935 1.9122 0.7902 9 6 6.4046 1.9159 -1.2432 10 6 7.6543 1.0722 0.7254 11 8 8.0754 -0.0475 0.9249 12 7 8.4147 2.1424 1.0303 13 6 9.7497 1.9531 1.6031 14 6 10.3956 3.3174 1.8531 15 6 11.7901 3.1196 2.4507 16 6 12.4260 4.4635 2.6976 17 1 11.8894 5.3680 2.4523 18 6 13.6933 4.5380 3.2355 19 7 14.3470 3.4365 3.5337 20 14 14.4813 6.2037 3.5421 21 1 13.5453 7.2785 3.1247 22 1 14.7878 6.3478 4.9880 23 1 15.7373 6.3092 2.7569 24 6 3.5786 -1.2010 0.0003 25 6 2.1971 -1.1982 -0.0054 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6558 2.1326 -0.0004 30 1 4.1173 2.1367 0.0106 31 1 6.8996 2.8823 -1.1473 32 1 6.9918 1.2706 -1.8967 33 1 5.4112 2.0568 -1.6690 34 1 8.0781 3.0380 0.8705 35 1 9.6674 1.4116 2.5455 36 1 10.3655 1.3818 0.9084 37 1 10.4781 3.8586 0.9106 38 1 9.7800 3.8890 2.5476 39 1 11.7081 2.5783 3.3933 40 1 12.4055 2.5483 1.7559 41 1 15.2384 3.4890 3.9125 42 1 4.1172 -2.1370 0.0007 43 1 1.6558 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:06 Heat of formation + Delta-G solvation = -71.501901 kcal Electronic energy + Delta-G solvation = -21941.448675 eV Core-core repulsion = 18565.192160 eV Total energy + Delta-G solvation = -3376.256516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80906 -39.43711 -37.78414 -35.45070 -33.53272 -32.80462 -31.88344 -31.28101 -30.67581 -26.93884 -26.74765 -24.70650 -23.43563 -22.71744 -21.48891 -20.77931 -19.89414 -18.59189 -17.42571 -16.40296 -16.00633 -15.95380 -15.68410 -15.18444 -15.04784 -14.66114 -14.46985 -14.12184 -13.92134 -13.79636 -13.66386 -13.31866 -12.74182 -12.65807 -12.33994 -12.31765 -11.97165 -11.86946 -11.80296 -11.73329 -11.15280 -11.02183 -10.94421 -10.78186 -10.59975 -9.91758 -9.87958 -9.41440 -9.28687 -9.13781 -8.89019 -8.40300 -8.29931 -6.04519 -4.07820 1.04721 1.13276 2.51829 2.59843 3.28043 3.35634 3.38758 3.46124 3.54399 4.36099 4.41862 4.48826 4.56668 4.59177 4.65364 4.69830 4.94043 5.04647 5.11504 5.27383 5.29172 5.31370 5.35044 5.42459 5.59412 5.65285 5.71769 5.74825 5.76019 6.01333 6.07439 6.10244 6.31607 6.37046 6.48893 6.54116 6.75412 6.94750 7.14168 7.56787 7.60519 7.72318 7.93940 8.24247 8.34993 8.99028 9.56589 11.06745 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040190 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.520437 B =13011.781473 C =13330.554958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.080 4.080 4 C -0.209 4.209 5 C 0.128 3.872 6 O -0.284 6.284 7 C 0.066 3.934 8 H 0.097 0.903 9 C -0.176 4.176 10 C 0.512 3.488 11 O -0.520 6.520 12 N -0.721 5.721 13 C 0.117 3.883 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.523 4.523 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.146 4.146 25 C -0.080 4.080 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.235 -4.070 -9.431 29.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.228 4.228 5 C 0.082 3.918 6 O -0.197 6.197 7 C 0.006 3.994 8 H 0.115 0.885 9 C -0.233 4.233 10 C 0.296 3.704 11 O -0.395 6.395 12 N -0.373 5.373 13 C -0.005 4.005 14 C -0.158 4.158 15 C -0.015 4.015 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.164 4.164 25 C -0.098 4.098 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.601 -5.127 -9.219 28.616 hybrid contribution 0.409 1.578 0.163 1.638 sum -26.192 -3.549 -9.056 27.940 Atomic orbital electron populations 1.20713 0.91113 1.02626 1.02090 1.19841 0.96216 0.93087 1.03849 1.20819 0.93202 0.97714 0.98051 1.21306 0.95428 0.97166 1.08855 1.19098 0.82293 0.94320 0.96043 1.86229 1.15965 1.30108 1.87353 1.22242 0.92927 0.85398 0.98814 0.88501 1.22335 1.04012 1.01607 0.95373 1.20009 0.85985 0.85529 0.78926 1.90748 1.72846 1.23734 1.52131 1.46090 1.18276 1.08330 1.64616 1.21711 0.80470 1.00034 0.98283 1.21897 0.99857 0.93262 1.00831 1.19042 0.88869 0.97441 0.96123 1.21229 1.00506 0.92551 1.41805 0.92573 1.25039 0.97334 0.96534 0.95612 1.69971 1.12849 1.26902 1.43462 0.86521 0.79297 0.84187 0.77884 1.19768 1.20990 1.20991 1.20478 0.93728 0.96527 1.05712 1.20855 0.92893 0.97819 0.98273 0.91483 0.91688 0.91742 0.85812 0.85185 0.90026 0.90529 0.90702 0.76740 0.91546 0.91517 0.92626 0.92645 0.96220 0.96204 0.92947 0.84970 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.13 -1.05 5.88 -104.60 -0.62 -1.67 16 3 C -0.08 -0.66 9.69 -39.61 -0.38 -1.04 16 4 C -0.21 -1.95 8.24 -39.44 -0.33 -2.27 16 5 C 0.13 1.47 6.60 -39.22 -0.26 1.21 16 6 O -0.28 -3.85 9.34 -39.28 -0.37 -4.22 16 7 C 0.07 0.75 2.64 -27.89 -0.07 0.67 16 8 H 0.10 0.86 6.31 -51.93 -0.33 0.53 16 9 C -0.18 -1.51 9.13 37.15 0.34 -1.18 16 10 C 0.51 7.68 7.18 -10.99 -0.08 7.60 16 11 O -0.52 -10.29 16.51 -14.30 -0.24 -10.53 16 12 N -0.72 -9.86 5.52 -60.29 -0.33 -10.19 16 13 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 14 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.15 -1.53 9.99 -39.43 -0.39 -1.93 16 25 C -0.08 -0.69 9.69 -39.60 -0.38 -1.07 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.13 0.97 5.43 -52.48 -0.29 0.69 16 31 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 34 H 0.40 4.11 8.25 -40.82 -0.34 3.78 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -33.82 361.40 -9.05 -42.87 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.75 Total: -0.60 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.53 Total: -13.16 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.40 Total: -36.10 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.60 Total: -14.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.82 -9.05 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.634 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds