Wall clock time and date at job start Tue Mar 31 2020 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.94687 * 2 1 4 4 C 1.38143 * 120.05274 * 179.72236 * 3 2 1 5 5 C 1.38725 * 119.94837 * 0.28135 * 4 3 2 6 6 O 1.35899 * 120.05713 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00167 * 5.43263 * 6 5 4 8 8 H 1.09001 * 109.46591 * 35.04169 * 7 6 5 9 9 C 1.52993 * 109.47250 * 275.04333 * 7 6 5 10 10 C 1.50701 * 109.47038 * 155.03952 * 7 6 5 11 11 O 1.21283 * 120.00355 * 5.00060 * 10 7 6 12 12 N 1.34775 * 119.99635 * 185.00391 * 10 7 6 13 13 C 1.46500 * 119.99906 * 179.97438 * 12 10 7 14 14 C 1.53003 * 109.47170 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46789 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46684 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00429 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99727 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00199 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47161 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47502 * 119.99372 * 20 18 16 23 23 H 1.48501 * 109.47082 * 239.99932 * 20 18 16 24 24 C 1.38739 * 119.88960 * 359.97438 * 5 4 3 25 25 C 1.38144 * 119.94120 * 0.02562 * 24 5 4 26 26 H 1.09006 * 109.47127 * 89.99853 * 1 2 3 27 27 H 1.08998 * 109.47128 * 209.99670 * 1 2 3 28 28 H 1.08996 * 109.46901 * 330.00130 * 1 2 3 29 29 H 1.08000 * 119.96859 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.02507 * 180.29453 * 4 3 2 31 31 H 1.09001 * 109.47329 * 180.02562 * 9 7 6 32 32 H 1.09005 * 109.46985 * 299.99951 * 9 7 6 33 33 H 1.08999 * 109.47191 * 59.99741 * 9 7 6 34 34 H 0.96994 * 120.00500 * 359.97438 * 12 10 7 35 35 H 1.09002 * 109.47359 * 299.99906 * 13 12 10 36 36 H 1.09005 * 109.47163 * 59.99575 * 13 12 10 37 37 H 1.08992 * 109.47338 * 299.99861 * 14 13 12 38 38 H 1.08995 * 109.46714 * 60.00202 * 14 13 12 39 39 H 1.09001 * 109.47090 * 299.99825 * 15 14 13 40 40 H 1.08995 * 109.47354 * 60.00562 * 15 14 13 41 41 H 0.97000 * 120.00176 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.02853 * 180.02562 * 24 5 4 43 43 H 1.07998 * 119.97152 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2006 0.0058 5 6 4.2734 -0.0001 0.0057 6 8 5.6324 -0.0002 0.0109 7 6 6.2808 1.2671 0.1368 8 1 5.6935 1.9122 0.7902 9 6 6.4046 1.9159 -1.2432 10 6 7.6543 1.0722 0.7254 11 8 8.0754 -0.0475 0.9249 12 7 8.4147 2.1424 1.0303 13 6 9.7497 1.9531 1.6031 14 6 10.3956 3.3174 1.8531 15 6 11.7901 3.1196 2.4507 16 6 12.4260 4.4635 2.6976 17 1 11.8894 5.3680 2.4523 18 6 13.6933 4.5380 3.2355 19 7 14.3470 3.4365 3.5337 20 14 14.4813 6.2037 3.5421 21 1 13.5453 7.2785 3.1247 22 1 14.7878 6.3478 4.9880 23 1 15.7373 6.3092 2.7569 24 6 3.5786 -1.2010 0.0003 25 6 2.1971 -1.1982 -0.0054 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6558 2.1326 -0.0004 30 1 4.1173 2.1367 0.0106 31 1 6.8996 2.8823 -1.1473 32 1 6.9918 1.2706 -1.8967 33 1 5.4112 2.0568 -1.6690 34 1 8.0781 3.0380 0.8705 35 1 9.6674 1.4116 2.5455 36 1 10.3655 1.3818 0.9084 37 1 10.4781 3.8586 0.9106 38 1 9.7800 3.8890 2.5476 39 1 11.7081 2.5783 3.3933 40 1 12.4055 2.5483 1.7559 41 1 15.2384 3.4890 3.9125 42 1 4.1172 -2.1370 0.0007 43 1 1.6558 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:06 Heat of formation + Delta-G solvation = -91.890413 kcal Electronic energy + Delta-G solvation = -21942.332788 eV Core-core repulsion = 18565.192160 eV Total energy + Delta-G solvation = -3377.140628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70777 -40.47943 -38.61588 -36.98436 -35.28732 -33.86292 -32.91887 -32.28060 -31.64079 -28.64301 -27.38149 -25.85872 -24.66737 -23.75399 -22.36340 -22.26924 -21.11847 -19.39475 -18.68507 -18.26409 -17.17795 -16.97240 -16.51533 -16.38005 -16.28140 -16.08606 -15.41868 -15.24829 -14.98267 -14.47614 -14.40016 -14.28493 -14.08290 -13.77077 -13.63770 -13.39267 -13.25342 -12.88081 -12.78124 -12.65392 -12.55715 -12.39074 -12.35417 -11.87811 -11.72057 -11.68867 -11.56916 -11.22616 -10.84613 -10.56556 -10.21202 -9.95634 -9.01355 -8.19785 -6.31264 0.38395 0.43729 1.41981 1.42045 1.42113 1.53927 1.56090 2.41241 2.56550 2.78799 3.14255 3.47450 3.68551 3.83982 3.89889 3.97236 4.10597 4.13416 4.19530 4.34472 4.46672 4.52420 4.53433 4.63791 4.72565 4.84089 4.91348 4.92588 4.93794 5.09755 5.11690 5.16510 5.19032 5.34264 5.38019 5.39770 5.52004 5.69792 5.70142 5.84082 5.85852 6.21317 6.33531 6.50373 6.86816 7.10923 7.38526 8.92509 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040190 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.520437 B =13011.781473 C =13330.554958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.209 4.209 5 C 0.100 3.900 6 O -0.317 6.317 7 C 0.072 3.928 8 H 0.127 0.873 9 C -0.170 4.170 10 C 0.509 3.491 11 O -0.577 6.577 12 N -0.703 5.703 13 C 0.129 3.871 14 C -0.100 4.100 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.069 0.931 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.168 4.168 25 C -0.085 4.085 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.420 0.580 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.071 0.929 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.815 -1.237 -10.111 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C -0.102 4.102 4 C -0.228 4.228 5 C 0.055 3.945 6 O -0.231 6.231 7 C 0.013 3.987 8 H 0.144 0.856 9 C -0.227 4.227 10 C 0.295 3.705 11 O -0.456 6.456 12 N -0.357 5.357 13 C 0.006 3.994 14 C -0.138 4.138 15 C -0.017 4.017 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.180 1.180 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.187 4.187 25 C -0.103 4.103 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.224 -2.247 -9.918 30.943 hybrid contribution 1.140 0.630 0.377 1.356 sum -28.084 -1.618 -9.541 29.705 Atomic orbital electron populations 1.20768 0.89109 1.03579 1.02972 1.20244 0.97755 0.92825 1.02372 1.21196 0.92944 0.98910 0.97106 1.21533 0.96060 0.96989 1.08179 1.19346 0.81570 0.95544 0.98017 1.86176 1.17386 1.31487 1.88061 1.22309 0.90417 0.85418 1.00583 0.85583 1.22353 1.05133 1.01964 0.93264 1.20789 0.87328 0.84611 0.77795 1.90722 1.74340 1.25997 1.54501 1.45789 1.16746 1.09441 1.63710 1.21293 0.82089 0.98681 0.97380 1.21598 0.96446 0.94305 1.01482 1.18968 0.92144 0.96023 0.94529 1.21715 1.00922 0.93735 1.41291 0.91294 1.26049 0.98202 1.00661 0.95406 1.70121 1.13342 1.29564 1.44590 0.85352 0.78330 0.79383 0.77675 1.18014 1.20706 1.20688 1.20656 0.94806 0.96335 1.06889 1.21119 0.92155 0.99220 0.97803 0.90519 0.90974 0.90636 0.83195 0.83249 0.87557 0.92289 0.88873 0.74245 0.93242 0.93123 0.90898 0.91015 0.99047 0.98979 0.92863 0.85880 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 71.24 0.71 -0.16 16 2 C -0.13 -1.84 5.88 -19.85 -0.12 -1.96 16 3 C -0.08 -1.15 9.69 22.25 0.22 -0.93 16 4 C -0.21 -3.45 8.24 22.36 0.18 -3.27 16 5 C 0.10 2.26 6.60 22.51 0.15 2.41 16 6 O -0.32 -8.72 9.34 -73.42 -0.69 -9.41 16 7 C 0.07 1.53 2.64 29.85 0.08 1.61 16 8 H 0.13 1.90 6.31 -2.39 -0.02 1.88 16 9 C -0.17 -2.56 9.13 71.98 0.66 -1.90 16 10 C 0.51 15.20 7.18 87.66 0.63 15.83 16 11 O -0.58 -23.83 16.51 15.95 0.26 -23.57 16 12 N -0.70 -18.43 5.52 -463.04 -2.55 -20.99 16 13 C 0.13 4.49 5.67 86.38 0.49 4.98 16 14 C -0.10 -3.72 5.27 30.60 0.16 -3.56 16 15 C 0.02 1.08 4.97 29.85 0.15 1.23 16 16 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 19 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 20 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 25 C -0.09 -1.38 9.69 22.26 0.22 -1.17 16 26 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 28 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 29 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 30 H 0.15 1.73 5.43 -2.91 -0.02 1.71 16 31 H 0.11 1.05 7.92 -2.39 -0.02 1.03 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 1.09 6.91 -2.39 -0.02 1.07 16 34 H 0.42 7.44 8.25 -92.71 -0.77 6.67 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 42 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -76.43 361.40 4.01 -72.42 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.23 Total: 12.41 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.44 Total: -19.53 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.27 Total: -77.78 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.42 Total: -32.97 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.43 4.01 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.475 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds