Wall clock time and date at job start Tue Mar 31 2020 07:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38293 * 119.97311 * 2 1 4 4 C 1.38240 * 120.11526 * 179.97438 * 3 2 1 5 5 C 1.38162 * 120.05516 * 0.02562 * 4 3 2 6 6 C 1.38714 * 119.94747 * 359.97438 * 5 4 3 7 7 O 1.35895 * 120.05784 * 180.02562 * 6 5 4 8 8 C 1.42899 * 117.00268 * 354.55566 * 7 6 5 9 9 H 1.09001 * 109.46854 * 324.95334 * 8 7 6 10 10 C 1.53001 * 109.47265 * 84.95910 * 8 7 6 11 11 C 1.50701 * 109.47221 * 204.96017 * 8 7 6 12 12 O 1.21282 * 119.99602 * 354.99541 * 11 8 7 13 13 N 1.34771 * 119.99857 * 175.00027 * 11 8 7 14 14 C 1.46510 * 119.99875 * 179.97438 * 13 11 8 15 15 C 1.52996 * 109.47172 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47201 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47459 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99596 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99737 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46696 * 90.00278 * 21 19 17 23 23 H 1.48497 * 109.47516 * 210.00191 * 21 19 17 24 24 H 1.48497 * 109.47116 * 330.00778 * 21 19 17 25 25 C 1.38125 * 119.97897 * 180.30001 * 2 1 3 26 26 H 1.09000 * 109.47171 * 90.00301 * 1 2 3 27 27 H 1.09003 * 109.47218 * 209.99156 * 1 2 3 28 28 H 1.08997 * 109.47608 * 330.00183 * 1 2 3 29 29 H 1.07998 * 119.94084 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.97395 * 180.02562 * 4 3 2 31 31 H 1.07998 * 120.02999 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47180 * 59.99689 * 10 8 7 33 33 H 1.09008 * 109.46692 * 299.99923 * 10 8 7 34 34 H 1.08995 * 109.47075 * 180.02562 * 10 8 7 35 35 H 0.96994 * 120.00259 * 359.97438 * 13 11 8 36 36 H 1.08998 * 109.46961 * 300.00231 * 14 13 11 37 37 H 1.09002 * 109.46854 * 59.99727 * 14 13 11 38 38 H 1.08998 * 109.47205 * 300.00520 * 15 14 13 39 39 H 1.09002 * 109.47289 * 60.00196 * 15 14 13 40 40 H 1.09007 * 109.47360 * 300.00391 * 16 15 14 41 41 H 1.09006 * 109.47431 * 60.00053 * 16 15 14 42 42 H 0.97003 * 119.99792 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.02490 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0073 0.0005 6 6 3.5846 -1.1958 0.0005 7 8 4.2659 -2.3716 0.0011 8 6 5.6879 -2.2977 -0.1192 9 1 5.9544 -1.4678 -0.7737 10 6 6.3058 -2.0761 1.2628 11 6 6.2103 -3.5852 -0.7026 12 8 5.4533 -4.5114 -0.9027 13 7 7.5187 -3.7074 -1.0017 14 6 8.0268 -4.9594 -1.5683 15 6 9.5317 -4.8344 -1.8138 16 6 10.0622 -6.1415 -2.4061 17 6 11.5447 -6.0186 -2.6473 18 1 12.0571 -5.0999 -2.4030 19 6 12.2465 -7.0787 -3.1809 20 7 13.5403 -6.9716 -3.3909 21 14 11.3599 -8.6675 -3.6041 22 1 10.8746 -8.6051 -5.0061 23 1 12.2951 -9.8113 -3.4544 24 1 10.2052 -8.8491 -2.6882 25 6 2.1971 -1.1964 -0.0063 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8901 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6564 2.1325 0.0004 30 1 4.1174 2.1382 0.0010 31 1 5.3551 0.0104 0.0005 32 1 6.0391 -2.9060 1.9173 33 1 5.9278 -1.1448 1.6847 34 1 7.3904 -2.0193 1.1710 35 1 8.1240 -2.9666 -0.8419 36 1 7.8385 -5.7762 -0.8717 37 1 7.5207 -5.1628 -2.5120 38 1 9.7196 -4.0175 -2.5106 39 1 10.0381 -4.6307 -0.8703 40 1 9.8742 -6.9587 -1.7096 41 1 9.5558 -6.3447 -3.3497 42 1 14.0342 -7.7175 -3.7659 43 1 1.6571 -2.1318 -0.0116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:09 Heat of formation + Delta-G solvation = -68.002220 kcal Electronic energy + Delta-G solvation = -22027.574487 eV Core-core repulsion = 18651.469729 eV Total energy + Delta-G solvation = -3376.104758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85265 -39.49660 -37.79842 -35.57292 -33.54703 -32.84083 -32.52438 -31.26419 -30.01884 -27.42095 -27.17008 -24.95304 -22.98483 -22.79685 -21.57564 -20.73371 -19.79277 -18.35687 -17.49675 -16.70072 -16.42216 -15.99529 -15.90259 -15.36539 -15.16818 -14.62503 -14.33701 -14.15541 -13.86493 -13.69001 -13.66824 -13.24730 -12.74244 -12.73712 -12.66624 -12.38118 -12.07224 -12.01061 -11.93267 -11.81504 -11.26059 -11.13474 -11.09109 -10.92274 -10.22244 -10.00755 -9.80745 -9.59702 -9.26219 -9.10244 -8.98492 -8.58151 -8.46067 -6.08985 -4.07952 0.99664 1.15049 2.45571 2.52834 3.29591 3.37336 3.41430 3.44321 3.47483 4.32528 4.42120 4.46942 4.52267 4.55625 4.61668 4.75445 4.90476 5.00501 5.13046 5.22160 5.25057 5.25684 5.28201 5.39352 5.48985 5.58164 5.59215 5.72007 5.76603 5.94956 6.01906 6.11400 6.24120 6.27266 6.38530 6.45182 6.61113 6.73125 7.10814 7.18636 7.32052 7.48406 7.73004 8.16771 8.47061 8.94475 9.53165 11.04121 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.002277 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.232032 B =12294.800153 C =12654.955244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.219 4.219 6 C 0.137 3.863 7 O -0.284 6.284 8 C 0.066 3.934 9 H 0.098 0.902 10 C -0.176 4.176 11 C 0.513 3.487 12 O -0.520 6.520 13 N -0.720 5.720 14 C 0.115 3.885 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.364 18.064 9.196 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.180 4.180 4 C -0.094 4.094 5 C -0.237 4.237 6 C 0.091 3.909 7 O -0.197 6.197 8 C 0.006 3.994 9 H 0.116 0.884 10 C -0.233 4.233 11 C 0.297 3.703 12 O -0.395 6.395 13 N -0.373 5.373 14 C -0.007 4.007 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.170 4.170 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.831 17.057 8.995 29.885 hybrid contribution 0.307 -0.330 -0.252 0.517 sum -22.524 16.727 8.743 29.387 Atomic orbital electron populations 1.20816 0.90708 1.03011 1.02660 1.19719 0.96093 0.92218 0.96791 1.20942 0.94190 0.97515 1.05360 1.20922 0.94171 0.97364 0.96910 1.21306 1.00412 0.92258 1.09766 1.19063 0.91866 0.84627 0.95348 1.86221 1.18386 1.27706 1.87351 1.22240 0.80507 0.97717 0.98910 0.88402 1.22339 1.01725 1.04009 0.95275 1.20015 0.82853 0.88649 0.78808 1.90744 1.56374 1.40385 1.52039 1.46042 1.08011 1.18367 1.64884 1.21715 0.96092 0.84547 0.98381 1.21712 0.90713 1.01336 1.01341 1.19508 0.97146 0.92554 0.95732 1.21081 0.91169 1.01537 1.42289 0.90998 1.25032 0.94747 0.98710 0.95009 1.69911 1.07110 1.32178 1.44902 0.86774 0.79926 0.83271 0.79324 1.20230 1.21342 1.18896 1.20329 0.90861 0.98809 1.07021 0.90812 0.91240 0.91284 0.85983 0.85712 0.85227 0.90541 0.90634 0.89971 0.76554 0.91523 0.91569 0.92031 0.91981 0.96257 0.96702 0.92672 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.05 -0.41 5.88 -104.65 -0.62 -1.03 16 3 C -0.16 -1.28 9.70 -39.56 -0.38 -1.67 16 4 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 5 C -0.22 -2.00 8.24 -39.43 -0.33 -2.33 16 6 C 0.14 1.55 6.60 -39.22 -0.26 1.29 16 7 O -0.28 -3.76 9.34 -39.27 -0.37 -4.12 16 8 C 0.07 0.72 2.63 -27.88 -0.07 0.65 16 9 H 0.10 0.83 6.31 -51.93 -0.33 0.51 16 10 C -0.18 -1.46 9.13 37.16 0.34 -1.12 16 11 C 0.51 7.37 7.18 -10.99 -0.08 7.29 16 12 O -0.52 -9.91 16.51 -14.31 -0.24 -10.15 16 13 N -0.72 -9.35 5.52 -60.29 -0.33 -9.68 16 14 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 15 C -0.11 -2.03 5.27 -26.74 -0.14 -2.17 16 16 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 17 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 21 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 25 C -0.15 -1.59 9.64 -39.43 -0.38 -1.97 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.13 0.95 5.43 -52.49 -0.28 0.66 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.54 6.91 -51.92 -0.36 0.18 16 34 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 35 H 0.40 3.91 8.26 -40.82 -0.34 3.57 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -34.21 357.81 -8.68 -42.88 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.72 Total: -0.53 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.52 Total: -14.00 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.44 Total: -36.41 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.60 Total: -14.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.21 -8.68 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.119 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds