Wall clock time and date at job start Tue Mar 31 2020 07:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38293 * 119.97311 * 2 1 4 4 C 1.38240 * 120.11526 * 179.97438 * 3 2 1 5 5 C 1.38162 * 120.05516 * 0.02562 * 4 3 2 6 6 C 1.38714 * 119.94747 * 359.97438 * 5 4 3 7 7 O 1.35895 * 120.05784 * 180.02562 * 6 5 4 8 8 C 1.42899 * 117.00268 * 354.55566 * 7 6 5 9 9 H 1.09001 * 109.46854 * 324.95334 * 8 7 6 10 10 C 1.53001 * 109.47265 * 84.95910 * 8 7 6 11 11 C 1.50701 * 109.47221 * 204.96017 * 8 7 6 12 12 O 1.21282 * 119.99602 * 354.99541 * 11 8 7 13 13 N 1.34771 * 119.99857 * 175.00027 * 11 8 7 14 14 C 1.46510 * 119.99875 * 179.97438 * 13 11 8 15 15 C 1.52996 * 109.47172 * 179.97438 * 14 13 11 16 16 C 1.52991 * 109.47201 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47459 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99596 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99737 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46696 * 90.00278 * 21 19 17 23 23 H 1.48497 * 109.47516 * 210.00191 * 21 19 17 24 24 H 1.48497 * 109.47116 * 330.00778 * 21 19 17 25 25 C 1.38125 * 119.97897 * 180.30001 * 2 1 3 26 26 H 1.09000 * 109.47171 * 90.00301 * 1 2 3 27 27 H 1.09003 * 109.47218 * 209.99156 * 1 2 3 28 28 H 1.08997 * 109.47608 * 330.00183 * 1 2 3 29 29 H 1.07998 * 119.94084 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.97395 * 180.02562 * 4 3 2 31 31 H 1.07998 * 120.02999 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47180 * 59.99689 * 10 8 7 33 33 H 1.09008 * 109.46692 * 299.99923 * 10 8 7 34 34 H 1.08995 * 109.47075 * 180.02562 * 10 8 7 35 35 H 0.96994 * 120.00259 * 359.97438 * 13 11 8 36 36 H 1.08998 * 109.46961 * 300.00231 * 14 13 11 37 37 H 1.09002 * 109.46854 * 59.99727 * 14 13 11 38 38 H 1.08998 * 109.47205 * 300.00520 * 15 14 13 39 39 H 1.09002 * 109.47289 * 60.00196 * 15 14 13 40 40 H 1.09007 * 109.47360 * 300.00391 * 16 15 14 41 41 H 1.09006 * 109.47431 * 60.00053 * 16 15 14 42 42 H 0.97003 * 119.99792 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.02490 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0073 0.0005 6 6 3.5846 -1.1958 0.0005 7 8 4.2659 -2.3716 0.0011 8 6 5.6879 -2.2977 -0.1192 9 1 5.9544 -1.4678 -0.7737 10 6 6.3058 -2.0761 1.2628 11 6 6.2103 -3.5852 -0.7026 12 8 5.4533 -4.5114 -0.9027 13 7 7.5187 -3.7074 -1.0017 14 6 8.0268 -4.9594 -1.5683 15 6 9.5317 -4.8344 -1.8138 16 6 10.0622 -6.1415 -2.4061 17 6 11.5447 -6.0186 -2.6473 18 1 12.0571 -5.0999 -2.4030 19 6 12.2465 -7.0787 -3.1809 20 7 13.5403 -6.9716 -3.3909 21 14 11.3599 -8.6675 -3.6041 22 1 10.8746 -8.6051 -5.0061 23 1 12.2951 -9.8113 -3.4544 24 1 10.2052 -8.8491 -2.6882 25 6 2.1971 -1.1964 -0.0063 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8901 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6564 2.1325 0.0004 30 1 4.1174 2.1382 0.0010 31 1 5.3551 0.0104 0.0005 32 1 6.0391 -2.9060 1.9173 33 1 5.9278 -1.1448 1.6847 34 1 7.3904 -2.0193 1.1710 35 1 8.1240 -2.9666 -0.8419 36 1 7.8385 -5.7762 -0.8717 37 1 7.5207 -5.1628 -2.5120 38 1 9.7196 -4.0175 -2.5106 39 1 10.0381 -4.6307 -0.8703 40 1 9.8742 -6.9587 -1.7096 41 1 9.5558 -6.3447 -3.3497 42 1 14.0342 -7.7175 -3.7659 43 1 1.6571 -2.1318 -0.0116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:09 Heat of formation + Delta-G solvation = -89.183996 kcal Electronic energy + Delta-G solvation = -22028.492998 eV Core-core repulsion = 18651.469729 eV Total energy + Delta-G solvation = -3377.023269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71485 -40.48465 -38.60112 -37.01053 -35.24481 -33.82907 -33.42229 -32.70027 -30.74634 -28.99240 -27.79886 -25.98222 -24.45177 -23.45482 -22.49478 -22.24248 -20.94945 -19.13378 -19.02644 -18.25363 -17.30292 -16.97833 -16.78297 -16.47717 -16.30480 -16.05682 -15.40392 -15.21273 -14.93412 -14.78111 -14.47556 -14.35230 -13.93535 -13.84012 -13.70783 -13.40978 -13.22389 -12.91191 -12.75908 -12.73456 -12.68845 -12.39908 -11.97812 -11.94253 -11.80866 -11.72150 -11.60473 -11.33543 -10.88199 -10.76442 -10.20347 -9.74757 -9.16788 -8.29678 -6.33218 0.35590 0.46881 1.36265 1.38173 1.41844 1.49477 1.53755 2.35732 2.54486 2.79161 3.06146 3.47388 3.68694 3.83821 3.92250 3.92538 4.06805 4.18414 4.18710 4.32213 4.42929 4.48235 4.52288 4.63699 4.64476 4.82595 4.86702 4.87001 4.88224 5.00452 5.03533 5.08913 5.24184 5.29974 5.35825 5.47688 5.49368 5.55227 5.64562 5.65429 5.84303 6.27028 6.32943 6.49262 6.74917 7.09579 7.31573 8.86474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.002277 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.232032 B =12294.800153 C =12654.955244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.222 4.222 6 C 0.111 3.889 7 O -0.316 6.316 8 C 0.071 3.929 9 H 0.126 0.874 10 C -0.170 4.170 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.706 5.706 14 C 0.126 3.874 15 C -0.099 4.099 16 C -0.014 4.014 17 C -0.529 4.529 18 H 0.040 0.960 19 C 0.004 3.996 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.249 1.249 25 C -0.177 4.177 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.419 0.581 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.266 0.734 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 19.879 9.651 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.095 4.095 5 C -0.241 4.241 6 C 0.066 3.934 7 O -0.230 6.230 8 C 0.011 3.989 9 H 0.143 0.857 10 C -0.227 4.227 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.359 5.359 14 C 0.003 3.997 15 C -0.137 4.137 16 C -0.052 4.052 17 C -0.567 4.567 18 H 0.058 0.942 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.172 1.172 25 C -0.196 4.196 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.108 18.921 9.467 32.075 hybrid contribution 0.713 -0.781 -0.381 1.124 sum -23.395 18.140 9.086 30.966 Atomic orbital electron populations 1.20871 0.89080 1.03867 1.03308 1.20040 0.97426 0.91871 0.96075 1.21324 0.94596 0.98119 1.04156 1.21319 0.94444 0.98052 0.95650 1.21538 1.01412 0.91765 1.09345 1.19318 0.92172 0.84851 0.97046 1.86168 1.19493 1.29317 1.87995 1.22321 0.79949 0.96015 1.00592 0.85688 1.22351 1.02989 1.04102 0.93305 1.20698 0.82510 0.89351 0.77757 1.90717 1.57715 1.42533 1.54349 1.45805 1.08151 1.17948 1.64006 1.21362 0.94571 0.85742 0.98056 1.21480 0.91815 0.98928 1.01488 1.19483 0.94149 0.95278 0.96290 1.21456 0.93650 1.00240 1.41346 0.94163 1.25969 0.95458 1.02641 0.95193 1.70053 1.08901 1.33504 1.46513 0.85724 0.79077 0.78651 0.79615 1.19335 1.21068 1.17244 1.20503 0.91160 0.99374 1.08519 0.90171 0.91294 0.89552 0.83527 0.82919 0.83388 0.92191 0.88999 0.87654 0.74358 0.92323 0.92389 0.91362 0.91255 0.96143 0.96306 0.92539 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 2 C -0.05 -0.87 5.88 -19.88 -0.12 -0.99 16 3 C -0.16 -2.18 9.70 22.28 0.22 -1.97 16 4 C -0.08 -1.00 10.04 22.25 0.22 -0.78 16 5 C -0.22 -3.59 8.24 22.37 0.18 -3.41 16 6 C 0.11 2.47 6.60 22.51 0.15 2.62 16 7 O -0.32 -8.40 9.34 -73.38 -0.69 -9.09 16 8 C 0.07 1.44 2.63 29.85 0.08 1.52 16 9 H 0.13 1.81 6.31 -2.39 -0.02 1.79 16 10 C -0.17 -2.47 9.13 71.98 0.66 -1.82 16 11 C 0.51 14.31 7.18 87.66 0.63 14.94 16 12 O -0.57 -22.24 16.51 15.96 0.26 -21.98 16 13 N -0.71 -17.12 5.52 -463.05 -2.55 -19.68 16 14 C 0.13 3.89 5.67 86.38 0.49 4.38 16 15 C -0.10 -3.42 5.27 30.59 0.16 -3.26 16 16 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 17 C -0.53 -29.57 9.66 25.60 0.25 -29.32 16 18 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 19 C 0.00 0.25 5.47 84.66 0.46 0.71 16 20 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 21 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 25 C -0.18 -3.78 9.64 22.37 0.22 -3.56 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.72 8.09 -2.39 -0.02 0.71 16 28 H 0.09 0.60 8.08 -2.39 -0.02 0.59 16 29 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.15 1.69 5.43 -2.91 -0.02 1.67 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.06 6.91 -2.38 -0.02 1.04 16 34 H 0.10 1.01 7.92 -2.39 -0.02 0.99 16 35 H 0.42 7.04 8.26 -92.71 -0.77 6.27 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 41 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -76.23 357.81 3.82 -72.42 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.18 Total: 12.66 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.43 Total: -21.94 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.26 Total: -78.21 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.42 Total: -31.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -76.23 3.82 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.766 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds