Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38285 * 119.97249 * 2 1 4 4 C 1.38240 * 120.11093 * 180.23410 * 3 2 1 5 5 C 1.38171 * 120.05518 * 359.48268 * 4 3 2 6 6 C 1.38705 * 119.93978 * 0.26041 * 5 4 3 7 7 O 1.35904 * 120.05280 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00114 * 5.45237 * 7 6 5 9 9 H 1.09006 * 109.47087 * 35.05780 * 8 7 6 10 10 C 1.53004 * 109.47130 * 275.05962 * 8 7 6 11 11 C 1.50700 * 109.47279 * 155.06084 * 8 7 6 12 12 O 1.21276 * 119.99688 * 4.99932 * 11 8 7 13 13 N 1.34772 * 119.99669 * 185.00457 * 11 8 7 14 14 C 1.46505 * 119.99558 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.46958 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47204 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47336 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99897 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00265 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46727 * 59.99834 * 21 19 17 23 23 H 1.48494 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47079 * 299.99883 * 21 19 17 25 25 C 1.38118 * 119.97071 * 179.71858 * 2 1 3 26 26 H 1.08998 * 109.47413 * 270.28121 * 1 2 3 27 27 H 1.09000 * 109.46721 * 30.28028 * 1 2 3 28 28 H 1.08998 * 109.47177 * 150.27970 * 1 2 3 29 29 H 1.08003 * 119.94405 * 359.97438 * 3 2 1 30 30 H 1.08007 * 119.97341 * 179.76379 * 4 3 2 31 31 H 1.08001 * 120.02510 * 180.27585 * 5 4 3 32 32 H 1.08998 * 109.46878 * 59.99860 * 10 8 7 33 33 H 1.08998 * 109.47334 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47249 * 299.99876 * 10 8 7 35 35 H 0.96999 * 120.00675 * 359.97438 * 13 11 8 36 36 H 1.08999 * 109.46954 * 299.99456 * 14 13 11 37 37 H 1.08995 * 109.47391 * 59.99317 * 14 13 11 38 38 H 1.08999 * 109.47101 * 299.99681 * 15 14 13 39 39 H 1.08995 * 109.47370 * 59.99619 * 15 14 13 40 40 H 1.09008 * 109.46925 * 299.99686 * 16 15 14 41 41 H 1.08995 * 109.47229 * 59.99581 * 16 15 14 42 42 H 0.97003 * 119.99738 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.02986 * 0.04312 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0049 5 6 4.2752 0.0070 0.0010 6 6 3.5845 -1.1958 0.0064 7 8 4.2657 -2.3718 0.0127 8 6 5.6876 -2.2973 0.1345 9 1 5.9534 -1.4642 0.7853 10 6 6.3073 -2.0823 -1.2479 11 6 6.2093 -3.5820 0.7246 12 8 5.4521 -4.5072 0.9282 13 7 7.5173 -3.7028 1.0260 14 6 8.0246 -4.9520 1.5992 15 6 9.5295 -4.8262 1.8449 16 6 10.0592 -6.1306 2.4441 17 6 11.5413 -6.0066 2.6867 18 1 12.0543 -5.0893 2.4381 19 6 12.2426 -7.0644 3.2252 20 7 11.6181 -8.1816 3.5275 21 14 14.0800 -6.9109 3.5253 22 1 14.3356 -5.7933 4.4692 23 1 14.5940 -8.1769 4.1069 24 1 14.7708 -6.6402 2.2389 25 6 2.1970 -1.1965 0.0059 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.6565 2.1325 -0.0004 30 1 4.1176 2.1382 -0.0087 31 1 5.3552 0.0102 0.0017 32 1 5.9299 -1.1531 -1.6746 33 1 7.3918 -2.0250 -1.1550 34 1 6.0416 -2.9153 -1.8987 35 1 8.1230 -2.9629 0.8629 36 1 7.5173 -5.1509 2.5432 37 1 7.8372 -5.7722 0.9062 38 1 10.0364 -4.6275 0.9007 39 1 9.7172 -4.0060 2.5377 40 1 9.5521 -6.3289 3.3885 41 1 9.8714 -6.9511 1.7516 42 1 12.1115 -8.9258 3.9067 43 1 1.6570 -2.1318 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = -71.461971 kcal Electronic energy + Delta-G solvation = -21975.233368 eV Core-core repulsion = 18598.978583 eV Total energy + Delta-G solvation = -3376.254784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81234 -39.43728 -37.75624 -35.44910 -33.51217 -32.81664 -32.50784 -31.01772 -29.96783 -27.26906 -26.87269 -24.88784 -23.11848 -22.77595 -21.56495 -20.75980 -19.79362 -18.32361 -17.37722 -16.44425 -16.30932 -15.93292 -15.85082 -15.24211 -15.05666 -14.60299 -14.47136 -14.15108 -13.90390 -13.65902 -13.59906 -13.21626 -12.69631 -12.64072 -12.34944 -12.30376 -11.98902 -11.88679 -11.79877 -11.73983 -11.22471 -11.06292 -10.90722 -10.77549 -10.65009 -9.90884 -9.87792 -9.40932 -9.16095 -9.07876 -8.89011 -8.43237 -8.39370 -6.03913 -4.07436 1.02070 1.17593 2.50802 2.59894 3.30309 3.35340 3.36861 3.46827 3.53502 4.36274 4.42096 4.50019 4.55255 4.59685 4.66197 4.77921 4.92970 5.02830 5.15670 5.25115 5.27962 5.31387 5.31698 5.41600 5.59989 5.65432 5.71841 5.75208 5.78886 6.04547 6.10266 6.13625 6.29580 6.37069 6.48225 6.54198 6.75481 6.94869 7.14422 7.56797 7.60259 7.72529 7.94207 8.24257 8.35224 8.98909 9.56827 11.07247 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.002168 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.378820 B =12910.868153 C =13221.915998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.219 4.219 6 C 0.137 3.863 7 O -0.284 6.284 8 C 0.066 3.934 9 H 0.098 0.902 10 C -0.176 4.176 11 C 0.512 3.488 12 O -0.520 6.520 13 N -0.720 5.720 14 C 0.117 3.883 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 20.626 -9.381 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.094 4.094 5 C -0.238 4.238 6 C 0.092 3.908 7 O -0.196 6.196 8 C 0.006 3.994 9 H 0.115 0.885 10 C -0.233 4.233 11 C 0.296 3.704 12 O -0.395 6.395 13 N -0.373 5.373 14 C -0.005 4.005 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.170 4.170 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.354 19.532 -9.165 28.326 hybrid contribution 1.619 0.524 0.159 1.709 sum -16.735 20.056 -9.005 27.629 Atomic orbital electron populations 1.20818 0.90712 1.03003 1.02656 1.19717 0.96091 0.92217 0.96789 1.20935 0.94183 0.97505 1.05429 1.20921 0.94171 0.97342 0.96953 1.21304 1.00402 0.92266 1.09808 1.19068 0.91875 0.84646 0.95259 1.86228 1.18438 1.27642 1.87322 1.22250 0.80465 0.97839 0.98831 0.88465 1.22335 1.01676 1.03992 0.95322 1.20003 0.82926 0.88572 0.78939 1.90746 1.56321 1.40323 1.52069 1.46092 1.07953 1.18652 1.64612 1.21709 0.96149 0.84350 0.98283 1.21898 0.90843 1.02279 1.00834 1.19031 0.95708 0.90556 0.96099 1.21151 0.93452 0.99627 1.41993 0.92685 1.25035 0.98490 0.95365 0.95590 1.69955 1.36089 1.03897 1.43254 0.86632 0.85377 0.77319 0.78499 1.20248 1.21255 1.20246 1.20331 0.90868 0.98817 1.07008 0.90811 0.91305 0.91232 0.86004 0.85745 0.85243 0.90687 0.90020 0.90529 0.76736 0.91544 0.91519 0.92627 0.92648 0.96233 0.96222 0.92835 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.05 -0.42 5.88 -104.65 -0.62 -1.04 16 3 C -0.16 -1.32 9.70 -39.56 -0.38 -1.70 16 4 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 5 C -0.22 -2.06 8.24 -39.43 -0.33 -2.38 16 6 C 0.14 1.59 6.60 -39.22 -0.26 1.34 16 7 O -0.28 -3.87 9.34 -39.30 -0.37 -4.24 16 8 C 0.07 0.75 2.64 -27.88 -0.07 0.67 16 9 H 0.10 0.87 6.31 -51.93 -0.33 0.54 16 10 C -0.18 -1.52 9.13 37.16 0.34 -1.18 16 11 C 0.51 7.69 7.18 -10.99 -0.08 7.61 16 12 O -0.52 -10.30 16.51 -14.30 -0.24 -10.54 16 13 N -0.72 -9.87 5.52 -60.29 -0.33 -10.20 16 14 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 15 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 C -0.15 -1.64 9.64 -39.44 -0.38 -2.02 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 30 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 31 H 0.13 0.98 5.43 -52.49 -0.28 0.69 16 32 H 0.07 0.55 6.91 -51.93 -0.36 0.19 16 33 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.12 8.26 -40.82 -0.34 3.78 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -33.79 361.40 -9.05 -42.84 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.75 Total: -0.38 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.53 Total: -13.31 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.40 Total: -36.12 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.60 Total: -14.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.79 -9.05 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.622 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds