Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38285 * 119.97249 * 2 1 4 4 C 1.38240 * 120.11093 * 180.23410 * 3 2 1 5 5 C 1.38171 * 120.05518 * 359.48268 * 4 3 2 6 6 C 1.38705 * 119.93978 * 0.26041 * 5 4 3 7 7 O 1.35904 * 120.05280 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00114 * 5.45237 * 7 6 5 9 9 H 1.09006 * 109.47087 * 35.05780 * 8 7 6 10 10 C 1.53004 * 109.47130 * 275.05962 * 8 7 6 11 11 C 1.50700 * 109.47279 * 155.06084 * 8 7 6 12 12 O 1.21276 * 119.99688 * 4.99932 * 11 8 7 13 13 N 1.34772 * 119.99669 * 185.00457 * 11 8 7 14 14 C 1.46505 * 119.99558 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.46958 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47204 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47336 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99897 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00265 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46727 * 59.99834 * 21 19 17 23 23 H 1.48494 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47079 * 299.99883 * 21 19 17 25 25 C 1.38118 * 119.97071 * 179.71858 * 2 1 3 26 26 H 1.08998 * 109.47413 * 270.28121 * 1 2 3 27 27 H 1.09000 * 109.46721 * 30.28028 * 1 2 3 28 28 H 1.08998 * 109.47177 * 150.27970 * 1 2 3 29 29 H 1.08003 * 119.94405 * 359.97438 * 3 2 1 30 30 H 1.08007 * 119.97341 * 179.76379 * 4 3 2 31 31 H 1.08001 * 120.02510 * 180.27585 * 5 4 3 32 32 H 1.08998 * 109.46878 * 59.99860 * 10 8 7 33 33 H 1.08998 * 109.47334 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47249 * 299.99876 * 10 8 7 35 35 H 0.96999 * 120.00675 * 359.97438 * 13 11 8 36 36 H 1.08999 * 109.46954 * 299.99456 * 14 13 11 37 37 H 1.08995 * 109.47391 * 59.99317 * 14 13 11 38 38 H 1.08999 * 109.47101 * 299.99681 * 15 14 13 39 39 H 1.08995 * 109.47370 * 59.99619 * 15 14 13 40 40 H 1.09008 * 109.46925 * 299.99686 * 16 15 14 41 41 H 1.08995 * 109.47229 * 59.99581 * 16 15 14 42 42 H 0.97003 * 119.99738 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.02986 * 0.04312 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0049 5 6 4.2752 0.0070 0.0010 6 6 3.5845 -1.1958 0.0064 7 8 4.2657 -2.3718 0.0127 8 6 5.6876 -2.2973 0.1345 9 1 5.9534 -1.4642 0.7853 10 6 6.3073 -2.0823 -1.2479 11 6 6.2093 -3.5820 0.7246 12 8 5.4521 -4.5072 0.9282 13 7 7.5173 -3.7028 1.0260 14 6 8.0246 -4.9520 1.5992 15 6 9.5295 -4.8262 1.8449 16 6 10.0592 -6.1306 2.4441 17 6 11.5413 -6.0066 2.6867 18 1 12.0543 -5.0893 2.4381 19 6 12.2426 -7.0644 3.2252 20 7 11.6181 -8.1816 3.5275 21 14 14.0800 -6.9109 3.5253 22 1 14.3356 -5.7933 4.4692 23 1 14.5940 -8.1769 4.1069 24 1 14.7708 -6.6402 2.2389 25 6 2.1970 -1.1965 0.0059 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.6565 2.1325 -0.0004 30 1 4.1176 2.1382 -0.0087 31 1 5.3552 0.0102 0.0017 32 1 5.9299 -1.1531 -1.6746 33 1 7.3918 -2.0250 -1.1550 34 1 6.0416 -2.9153 -1.8987 35 1 8.1230 -2.9629 0.8629 36 1 7.5173 -5.1509 2.5432 37 1 7.8372 -5.7722 0.9062 38 1 10.0364 -4.6275 0.9007 39 1 9.7172 -4.0060 2.5377 40 1 9.5521 -6.3289 3.3885 41 1 9.8714 -6.9511 1.7516 42 1 12.1115 -8.9258 3.9067 43 1 1.6570 -2.1318 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = -91.875212 kcal Electronic energy + Delta-G solvation = -21976.118552 eV Core-core repulsion = 18598.978583 eV Total energy + Delta-G solvation = -3377.139969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71602 -40.48579 -38.59887 -36.98498 -35.28568 -33.74696 -33.41756 -32.50611 -30.72811 -28.66067 -27.79232 -26.02728 -24.68392 -23.45264 -22.51006 -22.35634 -20.96519 -19.13366 -18.66403 -18.19376 -17.28131 -16.97594 -16.77536 -16.51091 -16.28670 -16.20808 -15.38323 -15.20867 -14.98953 -14.46554 -14.35129 -14.26428 -13.93080 -13.78134 -13.62451 -13.38235 -13.21761 -12.90478 -12.73317 -12.69976 -12.55801 -12.43557 -12.38695 -11.97075 -11.76766 -11.67872 -11.56756 -11.25784 -10.85190 -10.54770 -10.21506 -9.74512 -9.16522 -8.19224 -6.30962 0.35955 0.47217 1.41736 1.42000 1.45146 1.52278 1.54392 2.41521 2.55158 2.79544 3.14511 3.47207 3.68470 3.84004 3.92580 3.92819 4.13015 4.18833 4.19374 4.32651 4.43303 4.52327 4.53028 4.64187 4.64955 4.82739 4.88116 4.92485 4.93583 5.00623 5.09376 5.16509 5.24460 5.33845 5.36328 5.49537 5.51661 5.65567 5.70123 5.84046 5.84786 6.21408 6.33585 6.50068 6.86640 7.10620 7.38737 8.92610 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.002168 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.378820 B =12910.868153 C =13221.915998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.222 4.222 6 C 0.111 3.889 7 O -0.318 6.318 8 C 0.072 3.928 9 H 0.127 0.873 10 C -0.170 4.170 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.703 5.703 14 C 0.129 3.871 15 C -0.100 4.100 16 C 0.022 3.978 17 C -0.541 4.541 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.178 4.178 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.420 0.580 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.071 0.929 40 H -0.009 1.009 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.608 24.333 -10.083 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.094 4.094 5 C -0.240 4.240 6 C 0.066 3.934 7 O -0.231 6.231 8 C 0.013 3.987 9 H 0.145 0.855 10 C -0.227 4.227 11 C 0.295 3.705 12 O -0.456 6.456 13 N -0.357 5.357 14 C 0.006 3.994 15 C -0.138 4.138 16 C -0.016 4.016 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.197 4.197 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.189 23.300 -9.886 30.595 hybrid contribution 1.173 -0.605 0.381 1.373 sum -16.016 22.695 -9.505 29.358 Atomic orbital electron populations 1.20873 0.89088 1.03860 1.03304 1.20038 0.97425 0.91865 0.96080 1.21325 0.94617 0.98091 1.04145 1.21329 0.94422 0.98047 0.95600 1.21543 1.01444 0.91720 1.09330 1.19328 0.92171 0.84863 0.97057 1.86175 1.19551 1.29383 1.88009 1.22319 0.79938 0.95866 1.00608 0.85536 1.22353 1.03033 1.04123 0.93197 1.20782 0.82530 0.89394 0.77812 1.90721 1.57751 1.42655 1.54441 1.45789 1.08182 1.17998 1.63704 1.21291 0.95121 0.85647 0.97375 1.21599 0.91495 0.99250 1.01486 1.18957 0.95178 0.92954 0.94496 1.21654 0.94633 1.00096 1.41472 0.91295 1.26052 1.03894 0.94985 0.95367 1.70113 1.38209 1.04863 1.44401 0.85454 0.78944 0.77437 0.78918 1.18975 1.21340 1.18946 1.20505 0.91189 0.99376 1.08582 0.90182 0.89501 0.91346 0.83470 0.82811 0.83300 0.88855 0.87529 0.92303 0.74235 0.93250 0.93125 0.90888 0.91018 0.99081 0.99014 0.92858 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.56 16 2 C -0.05 -0.90 5.88 -19.88 -0.12 -1.02 16 3 C -0.16 -2.23 9.70 22.28 0.22 -2.02 16 4 C -0.08 -1.01 10.04 22.25 0.22 -0.78 16 5 C -0.22 -3.67 8.24 22.37 0.18 -3.49 16 6 C 0.11 2.54 6.60 22.50 0.15 2.69 16 7 O -0.32 -8.81 9.34 -73.48 -0.69 -9.49 16 8 C 0.07 1.54 2.64 29.85 0.08 1.62 16 9 H 0.13 1.92 6.31 -2.38 -0.02 1.90 16 10 C -0.17 -2.57 9.13 71.98 0.66 -1.92 16 11 C 0.51 15.25 7.18 87.66 0.63 15.88 16 12 O -0.58 -23.90 16.51 15.97 0.26 -23.63 16 13 N -0.70 -18.47 5.52 -463.07 -2.55 -21.02 16 14 C 0.13 4.50 5.67 86.38 0.49 4.99 16 15 C -0.10 -3.72 5.27 30.59 0.16 -3.56 16 16 C 0.02 1.12 4.97 29.85 0.15 1.27 16 17 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 20 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 21 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.18 -3.94 9.64 22.36 0.22 -3.72 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 29 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.15 1.73 5.43 -2.91 -0.02 1.71 16 32 H 0.09 1.10 6.91 -2.39 -0.02 1.09 16 33 H 0.11 1.06 7.92 -2.39 -0.02 1.04 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 7.46 8.26 -92.71 -0.77 6.69 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.69 361.40 4.01 -72.68 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.23 Total: 12.86 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.44 Total: -19.97 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.27 Total: -77.86 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.42 Total: -33.13 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.69 4.01 -72.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.198 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds