Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99920 * 2 1 4 4 O 1.20825 * 119.99672 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00232 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47199 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00434 * 269.99559 * 6 5 3 8 8 H 1.07999 * 120.00226 * 188.56186 * 7 6 5 9 9 C 1.38817 * 119.99505 * 8.56239 * 7 6 5 10 10 N 1.31616 * 120.00185 * 24.79328 * 9 7 6 11 11 Si 1.86800 * 119.99993 * 204.79704 * 9 7 6 12 12 H 1.48494 * 109.47360 * 89.99921 * 11 9 7 13 13 H 1.48499 * 109.47052 * 210.00107 * 11 9 7 14 14 H 1.48499 * 109.47000 * 329.99806 * 11 9 7 15 15 C 1.46504 * 119.99856 * 89.99855 * 6 5 3 16 16 C 1.53000 * 109.47234 * 92.15568 * 15 6 5 17 17 C 1.53003 * 109.47172 * 180.02562 * 16 15 6 18 18 C 1.50696 * 109.47129 * 179.97438 * 17 16 15 19 19 C 1.38258 * 119.99448 * 264.99310 * 18 17 16 20 20 C 1.38218 * 119.99450 * 179.70008 * 19 18 17 21 21 C 1.38258 * 120.00044 * 0.02706 * 20 19 18 22 22 C 1.38208 * 120.00060 * 359.97438 * 21 20 19 23 23 C 1.38209 * 120.00159 * 84.72635 * 18 17 16 24 24 C 1.50700 * 119.99912 * 0.27049 * 23 18 17 25 25 H 1.09005 * 109.46803 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47436 * 299.99669 * 1 2 3 27 27 H 1.08998 * 109.47466 * 60.00355 * 1 2 3 28 28 H 1.09001 * 109.47460 * 59.99413 * 5 3 2 29 29 H 1.09003 * 109.47017 * 299.99333 * 5 3 2 30 30 H 0.97001 * 120.00600 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47032 * 332.15035 * 15 6 5 32 32 H 1.09003 * 109.47119 * 212.15006 * 15 6 5 33 33 H 1.08989 * 109.47416 * 59.99501 * 16 15 6 34 34 H 1.08995 * 109.46557 * 299.99398 * 16 15 6 35 35 H 1.09002 * 109.47139 * 59.99439 * 17 16 15 36 36 H 1.09002 * 109.46796 * 299.99842 * 17 16 15 37 37 H 1.07989 * 120.00602 * 359.73105 * 19 18 17 38 38 H 1.08008 * 119.99664 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.99699 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.99749 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.47095 * 90.01056 * 24 23 18 42 42 H 1.09006 * 109.47284 * 210.00137 * 24 23 18 43 43 H 1.08992 * 109.47135 * 330.00233 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6798 -0.0011 7 6 4.1753 3.3362 -1.1872 8 1 4.6124 4.3237 -1.1927 9 6 3.8098 2.7321 -2.3824 10 7 2.8744 1.8062 -2.3928 11 14 4.6456 3.2332 -3.9760 12 1 5.8407 2.3802 -4.1978 13 1 3.6984 3.0620 -5.1068 14 1 5.0621 4.6560 -3.8904 15 6 4.1896 3.3826 1.2674 16 6 5.6577 3.2636 1.6815 17 6 5.8749 3.9970 3.0067 18 6 7.3208 3.8793 3.4148 19 6 7.7143 2.8787 4.2839 20 6 9.0415 2.7669 4.6534 21 6 9.9753 3.6561 4.1544 22 6 9.5817 4.6564 3.2856 23 6 8.2542 4.7682 2.9161 24 6 7.8251 5.8590 1.9689 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7808 0.8892 30 1 2.6187 1.3844 -3.2280 31 1 3.5579 2.9384 2.0367 32 1 3.9303 4.4344 1.1469 33 1 6.2893 3.7077 0.9123 34 1 5.9170 2.2119 1.8021 35 1 5.2432 3.5525 3.7758 36 1 5.6153 5.0488 2.8865 37 1 6.9850 2.1841 4.6736 38 1 9.3491 1.9850 5.3320 39 1 11.0122 3.5690 4.4435 40 1 10.3111 5.3511 2.8962 41 1 7.5520 6.7477 2.5379 42 1 8.6469 6.0982 1.2939 43 1 6.9662 5.5201 1.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175911754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -64.303716 kcal Electronic energy + Delta-G solvation = -23292.118690 eV Core-core repulsion = 19916.174311 eV Total energy + Delta-G solvation = -3375.944379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79066 -40.41945 -38.05074 -36.60451 -35.36300 -33.55386 -32.98228 -31.09247 -29.64724 -27.94725 -27.65071 -26.86977 -24.37575 -22.82109 -22.33269 -21.45082 -21.21113 -18.84396 -18.09470 -17.39976 -17.04407 -16.86511 -16.70288 -16.51924 -15.80873 -15.60016 -15.28864 -14.88865 -14.55173 -14.23830 -14.05601 -13.90943 -13.78986 -13.42586 -13.33756 -12.99426 -12.84911 -12.79248 -12.66774 -12.56442 -12.39397 -12.22922 -12.07269 -11.85454 -11.76459 -11.56555 -11.38636 -11.31053 -11.02565 -10.49906 -9.61744 -9.38268 -8.97957 -7.95465 -5.21992 0.53894 0.57188 1.47792 1.50130 1.57645 2.01116 2.33841 2.56554 2.92413 3.24644 3.56524 3.95181 3.99126 4.17353 4.21312 4.31282 4.39397 4.46116 4.49695 4.52948 4.57788 4.58429 4.70251 4.72242 4.79079 4.85579 4.89976 4.92397 4.93641 5.06595 5.14584 5.21109 5.27019 5.33376 5.43363 5.62066 5.66531 5.68933 5.70219 5.89242 5.95952 6.20798 6.24267 7.03728 7.50607 7.81548 8.17978 9.14131 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.004269 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.327625 B = 6557.968726 C = 7820.259443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.469 3.531 4 O -0.549 6.549 5 C 0.188 3.812 6 N -0.584 5.584 7 C -0.251 4.251 8 H 0.080 0.920 9 C -0.051 4.051 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.282 1.282 13 H -0.304 1.304 14 H -0.273 1.273 15 C 0.150 3.850 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.098 4.098 24 C -0.120 4.120 25 H 0.126 0.874 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.249 0.751 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 0.315 13.138 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.311 3.689 4 O -0.438 6.438 5 C 0.058 3.942 6 N -0.304 5.304 7 C -0.380 4.380 8 H 0.098 0.902 9 C -0.246 4.246 10 N -0.578 5.578 11 Si 0.795 3.205 12 H -0.209 1.209 13 H -0.231 1.231 14 H -0.198 1.198 15 C 0.024 3.976 16 C -0.148 4.148 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.176 4.176 25 H 0.144 0.856 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.539 0.581 13.006 16.140 hybrid contribution -0.460 0.314 -1.331 1.443 sum 9.079 0.895 11.675 14.817 Atomic orbital electron populations 1.23150 0.77663 1.04126 1.00639 1.86506 1.23141 1.35461 1.85183 1.25820 0.94077 0.80142 0.68838 1.90423 1.67645 1.37893 1.47825 1.20476 0.84866 0.86834 1.01977 1.44289 1.75589 1.07909 1.02587 1.19545 1.33061 1.01292 0.84132 0.90195 1.25395 0.98272 1.00289 1.00609 1.69974 1.29378 1.32260 1.26229 0.85264 0.77826 0.78070 0.79292 1.20902 1.23091 1.19774 1.20954 0.94771 0.95655 0.86183 1.21885 0.97189 0.99953 0.95773 1.20521 0.92159 1.01365 0.97029 1.19935 0.95777 0.95867 0.97421 1.21289 0.97040 0.98024 0.98184 1.21405 0.93018 0.99931 1.00693 1.21410 1.00491 0.95324 0.97678 1.21284 0.95322 0.99432 0.98900 1.20036 0.93847 0.97499 0.98420 1.20888 1.02217 0.96647 0.97885 0.85573 0.92926 0.94837 0.88891 0.89659 0.94143 0.93753 0.94317 0.93052 0.92766 0.90415 0.90859 0.85204 0.84226 0.84101 0.84771 0.90375 0.90982 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.39 -16.92 10.57 -51.42 -0.54 -17.47 16 3 C 0.47 23.46 6.02 71.24 0.43 23.89 16 4 O -0.55 -31.24 15.90 21.97 0.35 -30.89 16 5 C 0.19 8.87 5.53 85.63 0.47 9.34 16 6 N -0.58 -28.37 2.02 -706.33 -1.43 -29.80 16 7 C -0.25 -13.46 9.70 84.04 0.82 -12.65 16 8 H 0.08 4.21 7.94 -2.91 -0.02 4.18 16 9 C -0.05 -2.83 4.90 84.86 0.42 -2.41 16 10 N -0.93 -53.87 8.95 21.65 0.19 -53.68 16 11 Si 0.97 44.96 29.62 68.60 2.03 46.99 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 C 0.15 5.93 5.67 86.38 0.49 6.42 16 16 C -0.11 -3.54 5.32 30.60 0.16 -3.38 16 17 C -0.07 -1.92 4.65 29.85 0.14 -1.78 16 18 C -0.09 -2.31 5.13 -19.87 -0.10 -2.41 16 19 C -0.13 -2.95 9.68 22.27 0.22 -2.73 16 20 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 21 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 22 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 23 C -0.10 -2.43 5.88 -19.87 -0.12 -2.54 16 24 C -0.12 -2.75 9.22 71.24 0.66 -2.10 16 25 H 0.13 3.23 8.14 -2.38 -0.02 3.21 16 26 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 27 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.09 4.79 6.29 -2.39 -0.02 4.77 16 29 H 0.09 3.35 8.07 -2.39 -0.02 3.33 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.04 1.68 8.06 -2.39 -0.02 1.66 16 32 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.05 1.84 6.90 -2.39 -0.02 1.82 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 36 H 0.07 1.88 7.00 -2.39 -0.02 1.87 16 37 H 0.13 2.63 8.06 -2.92 -0.02 2.61 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 43 H 0.06 1.64 5.41 -2.39 -0.01 1.63 16 Total: -1.00 -68.40 355.55 7.02 -61.38 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.98 Total: 18.71 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.44 Total: 4.75 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.23 Total: -83.47 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.19 Total: -48.36 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.40 7.02 -61.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175911754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.928 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds