Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35709 * 116.99513 * 2 1 4 4 C 1.38992 * 119.91228 * 90.00249 * 3 2 1 5 5 C 1.50696 * 119.95709 * 359.97438 * 4 3 2 6 6 C 1.37705 * 120.09087 * 179.97438 * 4 3 2 7 7 C 1.39734 * 119.90980 * 0.02562 * 6 4 3 8 8 C 1.47600 * 120.08638 * 179.97438 * 7 6 4 9 9 O 1.21583 * 120.00184 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99618 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99555 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47122 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47439 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47063 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00434 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99778 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00038 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47062 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46766 * 120.00103 * 18 16 14 21 21 H 1.48500 * 109.47310 * 240.00171 * 18 16 14 22 22 C 1.39733 * 119.82664 * 359.94844 * 7 6 4 23 23 C 1.37706 * 119.91001 * 0.07447 * 22 7 6 24 24 C 1.50698 * 119.95967 * 179.97438 * 23 22 7 25 25 H 1.08998 * 109.47203 * 299.99177 * 1 2 3 26 26 H 1.08998 * 109.47519 * 59.99963 * 1 2 3 27 27 H 1.09001 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47353 * 270.02434 * 5 4 3 29 29 H 1.09008 * 109.46972 * 30.01997 * 5 4 3 30 30 H 1.09004 * 109.47354 * 150.01813 * 5 4 3 31 31 H 1.08000 * 120.04776 * 179.72354 * 6 4 3 32 32 H 0.96995 * 120.00251 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47033 * 299.99596 * 11 10 8 34 34 H 1.08995 * 109.47477 * 59.99424 * 11 10 8 35 35 H 1.09001 * 109.46897 * 299.99754 * 12 11 10 36 36 H 1.09003 * 109.47206 * 59.99698 * 12 11 10 37 37 H 1.08993 * 109.47471 * 300.00321 * 13 12 11 38 38 H 1.09003 * 109.46726 * 59.99946 * 13 12 11 39 39 H 0.97004 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.04826 * 180.02562 * 22 7 6 41 41 H 1.09003 * 109.46915 * 269.97906 * 24 23 22 42 42 H 1.09005 * 109.46649 * 29.97383 * 24 23 22 43 43 H 1.09000 * 109.47591 * 149.97461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3597 1.8268 1.2048 5 6 2.0159 1.1530 2.5081 6 6 2.9852 3.0536 1.2091 7 6 3.3032 3.6778 0.0000 8 6 3.9732 4.9930 0.0001 9 8 4.2487 5.5349 1.0530 10 7 4.2795 5.5932 -1.1672 11 6 4.9449 6.8983 -1.1671 12 6 5.1775 7.3523 -2.6096 13 6 5.8719 8.7157 -2.6096 14 6 6.1014 9.1625 -4.0304 15 1 5.7834 8.5369 -4.8514 16 6 6.7174 10.3699 -4.2823 17 7 7.1052 11.1316 -3.2827 18 14 7.0026 10.9235 -6.0435 19 1 6.4788 9.8942 -6.9769 20 1 6.2974 12.2091 -6.2786 21 1 8.4579 11.1076 -6.2751 22 6 2.9857 3.0534 -1.2091 23 6 2.3597 1.8269 -1.2049 24 6 2.0162 1.1528 -2.5082 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.0173 1.4570 2.8220 29 1 2.0415 0.0713 2.3757 30 1 2.7401 1.4431 3.2693 31 1 3.2254 3.5349 2.1456 32 1 4.0600 5.1608 -2.0072 33 1 4.3170 7.6263 -0.6535 34 1 5.9027 6.8179 -0.6531 35 1 5.8056 6.6242 -3.1229 36 1 4.2198 7.4328 -3.1241 37 1 5.2435 9.4435 -2.0965 38 1 6.8295 8.6356 -2.0951 39 1 7.5389 11.9810 -3.4600 40 1 3.2301 3.5325 -2.1456 41 1 1.0179 1.4571 -2.8226 42 1 2.7410 1.4426 -3.2691 43 1 2.0415 0.0712 -2.3756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179906701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -75.384750 kcal Electronic energy + Delta-G solvation = -22228.043693 eV Core-core repulsion = 18851.618804 eV Total energy + Delta-G solvation = -3376.424889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77401 -39.39861 -37.28652 -35.47385 -34.02882 -33.31618 -31.94674 -30.88691 -28.41069 -27.29387 -26.85836 -26.23750 -23.88943 -22.49538 -21.24263 -20.71670 -19.81194 -18.01196 -17.34107 -16.95702 -16.27802 -16.05127 -15.37426 -15.31168 -14.49971 -14.40546 -14.21315 -14.10654 -13.97472 -13.64689 -13.53817 -13.40222 -13.10481 -12.57569 -12.29763 -12.24190 -11.96365 -11.87080 -11.77425 -11.67090 -11.50267 -10.93045 -10.75044 -10.58601 -10.30548 -9.98126 -9.88777 -9.41608 -9.11891 -8.97203 -8.94249 -8.69231 -8.38498 -6.02893 -4.05994 0.49220 1.01311 2.60807 3.29254 3.31247 3.35599 3.36992 3.40561 3.70477 4.37869 4.41919 4.43499 4.63396 4.84681 4.88330 4.92625 5.02408 5.07843 5.17055 5.23275 5.28664 5.30412 5.32992 5.40349 5.47429 5.68324 5.73902 5.75983 5.87989 5.99936 6.08636 6.14244 6.17334 6.33794 6.44877 6.57861 6.80703 6.98170 7.13711 7.62572 7.65911 7.74790 7.95860 8.31706 8.37582 9.00867 9.58311 11.08419 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.002516 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.627765 B =11125.204902 C =11979.521151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.334 6.334 3 C 0.111 3.889 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.055 4.055 7 C -0.126 4.126 8 C 0.552 3.448 9 O -0.540 6.540 10 N -0.720 5.720 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.080 4.080 23 C -0.107 4.107 24 C -0.113 4.113 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.133 0.867 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 -23.861 6.433 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.109 4.109 5 C -0.168 4.168 6 C -0.074 4.074 7 C -0.129 4.129 8 C 0.338 3.662 9 O -0.419 6.419 10 N -0.370 5.370 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.099 4.099 23 C -0.107 4.107 24 C -0.169 4.169 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.150 0.850 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.879 -23.449 7.212 28.186 hybrid contribution -0.015 0.456 -1.415 1.486 sum -13.894 -22.993 5.797 27.483 Atomic orbital electron populations 1.22995 0.78664 1.03263 1.00918 1.85910 1.19933 1.24904 1.94301 1.18536 0.97293 0.85978 0.91473 1.20135 1.00673 0.94778 0.95341 1.20712 1.01884 1.00919 0.93300 1.21060 0.95059 0.93086 0.98157 1.20075 1.02818 0.95862 0.94122 1.18175 0.79010 0.84725 0.84260 1.90778 1.54171 1.65732 1.31171 1.46148 1.60703 1.22244 1.07941 1.21696 0.96987 0.82081 0.99896 1.21899 1.00905 1.00919 0.92195 1.19035 0.95569 0.89439 0.97387 1.21234 1.38614 1.03833 0.92309 0.92592 1.25038 0.95661 0.96722 0.97101 1.69980 1.40597 1.12083 1.30596 0.86525 0.77875 0.78591 0.84925 1.19765 1.21000 1.20987 1.21126 0.97166 0.94163 0.97474 1.20087 1.00558 0.94730 0.95343 1.20725 1.01936 1.01035 0.93241 0.93410 0.93391 0.88709 0.91251 0.90757 0.91006 0.84137 0.76774 0.91541 0.91532 0.92671 0.92696 0.96232 0.96223 0.92969 0.84969 0.91198 0.90966 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 11.13 101.05 1.12 1.34 16 2 O -0.33 -3.04 8.47 -18.83 -0.16 -3.20 16 3 C 0.11 1.14 5.67 -39.02 -0.22 0.91 16 4 C -0.11 -1.13 5.89 -104.54 -0.62 -1.74 16 5 C -0.11 -0.87 9.78 36.00 0.35 -0.52 16 6 C -0.05 -0.65 9.23 -39.22 -0.36 -1.02 16 7 C -0.13 -1.61 5.87 -104.96 -0.62 -2.23 16 8 C 0.55 8.69 7.76 -12.44 -0.10 8.59 16 9 O -0.54 -10.44 16.34 5.29 0.09 -10.35 16 10 N -0.72 -10.65 5.51 -61.33 -0.34 -10.99 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 12 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.08 -0.85 9.18 -39.22 -0.36 -1.21 16 23 C -0.11 -1.05 5.89 -104.53 -0.62 -1.67 16 24 C -0.11 -0.84 9.78 36.00 0.35 -0.49 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.56 7.52 -51.92 -0.39 0.17 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.14 1.69 7.64 -52.49 -0.40 1.28 16 32 H 0.40 4.73 6.49 -40.82 -0.27 4.47 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 1.13 6.39 -52.49 -0.34 0.80 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -33.09 362.50 -7.82 -40.91 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.81 Total: -0.80 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.77 Total: -11.38 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.40 Total: -37.06 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.07 Total: -13.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.09 -7.82 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179906701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds