Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35709 * 116.99513 * 2 1 4 4 C 1.38992 * 119.91228 * 90.00249 * 3 2 1 5 5 C 1.50696 * 119.95709 * 359.97438 * 4 3 2 6 6 C 1.37705 * 120.09087 * 179.97438 * 4 3 2 7 7 C 1.39734 * 119.90980 * 0.02562 * 6 4 3 8 8 C 1.47600 * 120.08638 * 179.97438 * 7 6 4 9 9 O 1.21583 * 120.00184 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99618 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99555 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47122 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47439 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47063 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00434 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99778 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00038 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47062 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46766 * 120.00103 * 18 16 14 21 21 H 1.48500 * 109.47310 * 240.00171 * 18 16 14 22 22 C 1.39733 * 119.82664 * 359.94844 * 7 6 4 23 23 C 1.37706 * 119.91001 * 0.07447 * 22 7 6 24 24 C 1.50698 * 119.95967 * 179.97438 * 23 22 7 25 25 H 1.08998 * 109.47203 * 299.99177 * 1 2 3 26 26 H 1.08998 * 109.47519 * 59.99963 * 1 2 3 27 27 H 1.09001 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47353 * 270.02434 * 5 4 3 29 29 H 1.09008 * 109.46972 * 30.01997 * 5 4 3 30 30 H 1.09004 * 109.47354 * 150.01813 * 5 4 3 31 31 H 1.08000 * 120.04776 * 179.72354 * 6 4 3 32 32 H 0.96995 * 120.00251 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47033 * 299.99596 * 11 10 8 34 34 H 1.08995 * 109.47477 * 59.99424 * 11 10 8 35 35 H 1.09001 * 109.46897 * 299.99754 * 12 11 10 36 36 H 1.09003 * 109.47206 * 59.99698 * 12 11 10 37 37 H 1.08993 * 109.47471 * 300.00321 * 13 12 11 38 38 H 1.09003 * 109.46726 * 59.99946 * 13 12 11 39 39 H 0.97004 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.04826 * 180.02562 * 22 7 6 41 41 H 1.09003 * 109.46915 * 269.97906 * 24 23 22 42 42 H 1.09005 * 109.46649 * 29.97383 * 24 23 22 43 43 H 1.09000 * 109.47591 * 149.97461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3597 1.8268 1.2048 5 6 2.0159 1.1530 2.5081 6 6 2.9852 3.0536 1.2091 7 6 3.3032 3.6778 0.0000 8 6 3.9732 4.9930 0.0001 9 8 4.2487 5.5349 1.0530 10 7 4.2795 5.5932 -1.1672 11 6 4.9449 6.8983 -1.1671 12 6 5.1775 7.3523 -2.6096 13 6 5.8719 8.7157 -2.6096 14 6 6.1014 9.1625 -4.0304 15 1 5.7834 8.5369 -4.8514 16 6 6.7174 10.3699 -4.2823 17 7 7.1052 11.1316 -3.2827 18 14 7.0026 10.9235 -6.0435 19 1 6.4788 9.8942 -6.9769 20 1 6.2974 12.2091 -6.2786 21 1 8.4579 11.1076 -6.2751 22 6 2.9857 3.0534 -1.2091 23 6 2.3597 1.8269 -1.2049 24 6 2.0162 1.1528 -2.5082 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.0173 1.4570 2.8220 29 1 2.0415 0.0713 2.3757 30 1 2.7401 1.4431 3.2693 31 1 3.2254 3.5349 2.1456 32 1 4.0600 5.1608 -2.0072 33 1 4.3170 7.6263 -0.6535 34 1 5.9027 6.8179 -0.6531 35 1 5.8056 6.6242 -3.1229 36 1 4.2198 7.4328 -3.1241 37 1 5.2435 9.4435 -2.0965 38 1 6.8295 8.6356 -2.0951 39 1 7.5389 11.9810 -3.4600 40 1 3.2301 3.5325 -2.1456 41 1 1.0179 1.4571 -2.8226 42 1 2.7410 1.4426 -3.2691 43 1 2.0415 0.0712 -2.3756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179906701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -95.554590 kcal Electronic energy + Delta-G solvation = -22228.918322 eV Core-core repulsion = 18851.618804 eV Total energy + Delta-G solvation = -3377.299519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65107 -40.49461 -38.10527 -37.01797 -35.31043 -34.65224 -33.31577 -32.20193 -29.00180 -28.77918 -27.64031 -27.16999 -25.36948 -23.84333 -22.40139 -21.93297 -21.08685 -18.77488 -18.60562 -18.33474 -17.69225 -16.80991 -16.69764 -16.59475 -16.36844 -15.45598 -15.36977 -15.02878 -14.84175 -14.45084 -14.31538 -14.16871 -14.07391 -13.90384 -13.76125 -13.56311 -13.14275 -12.84520 -12.79231 -12.60460 -12.55053 -12.41768 -12.32553 -12.28130 -11.69322 -11.62672 -11.25010 -11.00340 -10.93078 -10.56237 -10.23366 -9.73695 -9.60933 -8.19640 -6.31053 -0.39054 0.21492 1.42085 1.42148 1.55417 1.61140 2.08285 2.42503 2.50172 2.87629 3.14318 3.59945 3.67195 3.70269 4.09739 4.13808 4.19464 4.23908 4.36293 4.45667 4.48539 4.53224 4.59727 4.61986 4.73362 4.75893 4.78808 4.83989 4.92555 4.94971 5.10745 5.15449 5.18040 5.28581 5.29887 5.36436 5.40449 5.51778 5.58228 5.70022 5.84002 6.21829 6.45758 6.47794 6.86670 7.11664 7.38633 8.92727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.002516 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.627765 B =11125.204902 C =11979.521151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.343 6.343 3 C 0.114 3.886 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.066 4.066 7 C -0.145 4.145 8 C 0.552 3.448 9 O -0.585 6.585 10 N -0.708 5.708 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.076 4.076 23 C -0.110 4.110 24 C -0.111 4.111 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.414 0.586 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.070 0.930 37 H -0.007 1.007 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 -26.030 4.374 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.260 6.260 3 C 0.070 3.930 4 C -0.115 4.115 5 C -0.166 4.166 6 C -0.085 4.085 7 C -0.148 4.148 8 C 0.341 3.659 9 O -0.466 6.466 10 N -0.359 5.359 11 C 0.005 3.995 12 C -0.140 4.140 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.094 4.094 23 C -0.111 4.111 24 C -0.167 4.167 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.252 0.748 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.170 0.830 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.308 -25.659 5.123 30.314 hybrid contribution 0.356 1.034 -0.724 1.312 sum -14.952 -24.625 4.399 29.143 Atomic orbital electron populations 1.23237 0.76767 1.04956 1.01461 1.85887 1.21653 1.24135 1.94340 1.18715 0.96712 0.86086 0.91537 1.20347 1.00176 0.94245 0.96706 1.20749 1.02694 1.00923 0.92221 1.21073 0.95849 0.93935 0.97660 1.19867 1.04610 0.94792 0.95534 1.18645 0.78273 0.85491 0.83534 1.90750 1.56102 1.67095 1.32692 1.45890 1.60165 1.21086 1.08797 1.21304 0.96367 0.83334 0.98502 1.21608 1.01140 0.97818 0.93396 1.18951 0.94350 0.92178 0.96014 1.21703 1.38293 1.04185 0.93488 0.91437 1.26041 0.95385 0.96956 1.01857 1.70125 1.41606 1.12646 1.33233 0.85356 0.77777 0.78329 0.79307 1.18106 1.20611 1.20632 1.21297 0.96521 0.94384 0.97244 1.20382 0.99842 0.94436 0.96428 1.20778 1.03015 1.00827 0.92075 0.93002 0.92747 0.86522 0.89930 0.90246 0.90719 0.85137 0.74778 0.92921 0.92995 0.91205 0.91156 0.98908 0.98952 0.92830 0.82989 0.89793 0.89900 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.13 113.37 1.26 1.53 16 2 O -0.34 -5.44 8.47 -90.30 -0.77 -6.21 16 3 C 0.11 2.11 5.67 22.63 0.13 2.24 16 4 C -0.11 -2.26 5.89 -19.81 -0.12 -2.37 16 5 C -0.11 -1.58 9.78 71.23 0.70 -0.88 16 6 C -0.07 -1.59 9.23 22.51 0.21 -1.38 16 7 C -0.14 -3.66 5.87 -20.08 -0.12 -3.78 16 8 C 0.55 17.59 7.76 86.71 0.67 18.26 16 9 O -0.58 -23.54 16.34 -3.98 -0.06 -23.60 16 10 N -0.71 -20.56 5.51 -466.20 -2.57 -23.13 16 11 C 0.13 4.63 5.67 86.38 0.49 5.12 16 12 C -0.10 -3.91 5.27 30.59 0.16 -3.74 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 18 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C -0.08 -1.46 9.18 22.51 0.21 -1.26 16 23 C -0.11 -1.93 5.89 -19.81 -0.12 -2.04 16 24 C -0.11 -1.31 9.78 71.24 0.70 -0.61 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.06 7.52 -2.38 -0.02 1.05 16 30 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.13 3.31 7.64 -2.91 -0.02 3.28 16 32 H 0.41 9.08 6.49 -92.71 -0.60 8.47 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.15 2.19 6.39 -2.91 -0.02 2.17 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.82 8.08 -2.38 -0.02 0.80 16 43 H 0.07 0.90 7.52 -2.39 -0.02 0.88 16 Total: -1.00 -72.63 362.50 4.33 -68.30 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.40 Total: 13.01 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 5.02 Total: -17.13 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -2.28 Total: -80.11 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.83 Total: -29.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.63 4.33 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179906701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.252 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds