Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 117.00185 * 2 1 4 4 C 1.38999 * 119.90649 * 89.99907 * 3 2 1 5 5 C 1.50693 * 119.95920 * 359.97438 * 4 3 2 6 6 C 1.37705 * 120.08499 * 179.97438 * 4 3 2 7 7 C 1.39731 * 119.91301 * 0.02562 * 6 4 3 8 8 C 1.47601 * 120.08693 * 179.97438 * 7 6 4 9 9 O 1.21588 * 120.00270 * 320.16108 * 8 7 6 10 10 N 1.34781 * 119.99713 * 140.16662 * 8 7 6 11 11 C 1.46491 * 120.00256 * 4.50083 * 10 8 7 12 12 C 1.46508 * 119.99449 * 184.50271 * 10 8 7 13 13 H 1.09000 * 109.47062 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46787 * 120.00263 * 12 10 8 15 15 C 1.50699 * 109.46873 * 239.99594 * 12 10 8 16 16 H 1.08000 * 120.00075 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99729 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99891 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99853 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47076 * 60.00325 * 19 17 15 21 21 H 1.48505 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47007 * 300.00149 * 19 17 15 23 23 C 1.39728 * 119.82341 * 0.27136 * 7 6 4 24 24 C 1.37709 * 119.91264 * 359.42475 * 23 7 6 25 25 C 1.50697 * 119.95700 * 180.27714 * 24 23 7 26 26 H 1.09000 * 109.46926 * 59.99639 * 1 2 3 27 27 H 1.08998 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46827 * 299.99783 * 1 2 3 29 29 H 1.09003 * 109.47067 * 270.02259 * 5 4 3 30 30 H 1.09006 * 109.47529 * 30.01506 * 5 4 3 31 31 H 1.08999 * 109.47653 * 150.01860 * 5 4 3 32 32 H 1.08004 * 120.04576 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46823 * 91.96808 * 11 10 8 34 34 H 1.09000 * 109.47598 * 331.97115 * 11 10 8 35 35 H 1.09004 * 109.47610 * 211.96650 * 11 10 8 36 36 H 1.08996 * 109.47451 * 59.99331 * 14 12 10 37 37 H 1.08993 * 109.47229 * 179.97438 * 14 12 10 38 38 H 1.09008 * 109.46627 * 299.99581 * 14 12 10 39 39 H 0.97004 * 119.99664 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.04687 * 179.72531 * 23 7 6 41 41 H 1.09000 * 109.47287 * 270.32203 * 25 24 23 42 42 H 1.09003 * 109.47205 * 30.32456 * 25 24 23 43 43 H 1.09006 * 109.46929 * 150.32440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3598 1.8267 1.2049 5 6 2.0158 1.1529 2.5082 6 6 2.9855 3.0533 1.2092 7 6 3.3036 3.6776 0.0002 8 6 3.9738 4.9927 0.0003 9 8 3.6487 5.8406 0.8089 10 7 4.9459 5.2536 -0.8960 11 6 5.2698 4.2704 -1.9325 12 6 5.6788 6.5207 -0.8335 13 1 5.3017 7.1180 -0.0034 14 6 7.1679 6.2387 -0.6233 15 6 5.4878 7.2755 -2.1238 16 1 4.8809 6.8539 -2.9113 17 6 6.0880 8.5045 -2.2988 18 7 6.8274 9.0177 -1.3398 19 14 5.8507 9.4405 -3.8978 20 1 4.4055 9.7148 -4.1010 21 1 6.5946 10.7242 -3.8350 22 1 6.3638 8.6264 -5.0287 23 6 2.9800 3.0563 -1.2088 24 6 2.3600 1.8267 -1.2047 25 6 2.0162 1.1530 -2.5081 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.0172 1.4571 2.8219 30 1 2.0412 0.0712 2.3759 31 1 2.7400 1.4429 3.2695 32 1 3.2301 3.5324 2.1458 33 1 4.6832 4.4791 -2.8272 34 1 5.0357 3.2696 -1.5699 35 1 6.3315 4.3310 -2.1719 36 1 7.5452 5.6411 -1.4530 37 1 7.7132 7.1813 -0.5772 38 1 7.3060 5.6927 0.3100 39 1 7.2499 9.8822 -1.4631 40 1 3.2202 3.5376 -2.1454 41 1 1.0180 1.4577 -2.8224 42 1 2.7410 1.4425 -3.2691 43 1 2.0410 0.0713 -2.3756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180044059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -46.019990 kcal Electronic energy + Delta-G solvation = -23679.710661 eV Core-core repulsion = 20304.559124 eV Total energy + Delta-G solvation = -3375.151537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51265 -39.04063 -36.96578 -35.39685 -33.76302 -32.89452 -31.36890 -29.24739 -28.17343 -26.85522 -26.32022 -26.07938 -25.21755 -23.24005 -21.04961 -20.63541 -18.48684 -17.80251 -16.81823 -16.59320 -15.90102 -15.75120 -15.48270 -14.56592 -14.40918 -14.15151 -13.88352 -13.58672 -13.48008 -13.32623 -13.04966 -12.80130 -12.57318 -12.42441 -12.32822 -11.97011 -11.82332 -11.54862 -11.45499 -11.37916 -11.07333 -11.04794 -10.80635 -10.70983 -10.27293 -10.16580 -10.03022 -9.19407 -9.06898 -8.61419 -8.46561 -8.39500 -7.60784 -6.07104 -4.15189 0.92284 1.32492 3.06250 3.28191 3.33238 3.35088 3.62676 3.84800 4.02273 4.40106 4.66444 4.76412 4.93994 5.04821 5.08521 5.23807 5.25290 5.29994 5.31383 5.40113 5.49076 5.51121 5.52538 5.65012 5.71777 5.79849 5.95648 6.03597 6.15455 6.27813 6.30395 6.42312 6.49884 6.65180 6.76379 6.82606 7.04589 7.39988 7.42540 7.51138 7.70774 8.00661 8.18636 8.49406 8.81720 9.00869 9.51067 10.98238 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.003895 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.429144 B = 7187.288616 C = 7755.421806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.334 6.334 3 C 0.100 3.900 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.064 4.064 7 C -0.110 4.110 8 C 0.544 3.456 9 O -0.546 6.546 10 N -0.583 5.583 11 C 0.078 3.922 12 C 0.258 3.742 13 H 0.064 0.936 14 C -0.148 4.148 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.086 4.086 24 C -0.108 4.108 25 C -0.110 4.110 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.095 0.905 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.141 0.859 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 -18.309 0.928 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.056 3.944 4 C -0.109 4.109 5 C -0.166 4.166 6 C -0.083 4.083 7 C -0.114 4.114 8 C 0.330 3.670 9 O -0.426 6.426 10 N -0.313 5.313 11 C -0.065 4.065 12 C 0.158 3.842 13 H 0.082 0.918 14 C -0.206 4.206 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.105 4.105 24 C -0.109 4.109 25 C -0.167 4.167 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.263 -17.839 1.376 20.148 hybrid contribution -0.201 0.757 -1.007 1.276 sum -9.464 -17.082 0.369 19.532 Atomic orbital electron populations 1.22963 0.79132 1.02917 1.00820 1.85900 1.19650 1.25187 1.94323 1.18453 0.98205 0.86229 0.91513 1.20050 1.00892 0.94823 0.95140 1.20679 1.01704 1.00731 0.93467 1.20964 0.96299 0.93285 0.97788 1.20238 1.01215 0.96005 0.93913 1.18188 0.80498 0.86380 0.81890 1.90750 1.64205 1.47462 1.40140 1.48172 1.34889 1.19981 1.28302 1.21919 1.02126 0.91271 0.91214 1.18985 0.87815 0.78640 0.98770 0.91794 1.22106 0.99532 1.02369 0.96602 1.21264 1.31110 1.03372 1.00674 0.92322 1.24891 0.94899 0.97081 0.96878 1.69869 1.32148 1.18298 1.32320 0.86542 0.78338 0.79058 0.83371 1.20238 1.21153 1.20223 1.21443 0.96984 0.93798 0.98268 1.20058 1.00801 0.94928 0.95106 1.20688 1.01730 1.00786 0.93453 0.93547 0.88972 0.93557 0.91458 0.90952 0.91234 0.84827 0.93039 0.91931 0.90969 0.95017 0.88675 0.96918 0.92607 0.84170 0.91481 0.91124 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 11.13 101.05 1.12 1.41 16 2 O -0.33 -3.79 8.47 -18.83 -0.16 -3.94 16 3 C 0.10 1.29 5.67 -39.02 -0.22 1.07 16 4 C -0.11 -1.44 5.89 -104.54 -0.62 -2.05 16 5 C -0.11 -1.12 9.78 36.00 0.35 -0.77 16 6 C -0.06 -1.00 9.27 -39.22 -0.36 -1.36 16 7 C -0.11 -1.92 5.21 -104.96 -0.55 -2.46 16 8 C 0.54 11.89 7.33 -12.44 -0.09 11.80 16 9 O -0.55 -14.05 16.26 5.29 0.09 -13.96 16 10 N -0.58 -12.80 2.75 -176.46 -0.49 -13.28 16 11 C 0.08 1.36 8.15 59.84 0.49 1.84 16 12 C 0.26 6.67 2.64 -69.08 -0.18 6.49 16 13 H 0.06 1.91 6.91 -51.93 -0.36 1.56 16 14 C -0.15 -3.56 8.94 37.16 0.33 -3.22 16 15 C -0.53 -14.30 8.37 -34.44 -0.29 -14.59 16 16 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 17 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.09 -1.27 7.10 -39.22 -0.28 -1.55 16 24 C -0.11 -1.40 5.89 -104.54 -0.62 -2.01 16 25 C -0.11 -1.09 9.78 36.00 0.35 -0.74 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 31 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 33 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 34 H 0.06 0.93 5.36 -51.93 -0.28 0.65 16 35 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 36 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 38 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.14 1.97 5.59 -52.48 -0.29 1.68 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -31.80 348.41 -6.77 -38.57 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.42 Total: 0.35 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.65 Total: -4.47 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.14 Total: -37.87 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.07 Total: -17.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.80 -6.77 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180044059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.450 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds