Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35710 * 117.00185 * 2 1 4 4 C 1.38999 * 119.90649 * 89.99907 * 3 2 1 5 5 C 1.50693 * 119.95920 * 359.97438 * 4 3 2 6 6 C 1.37705 * 120.08499 * 179.97438 * 4 3 2 7 7 C 1.39731 * 119.91301 * 0.02562 * 6 4 3 8 8 C 1.47601 * 120.08693 * 179.97438 * 7 6 4 9 9 O 1.21588 * 120.00270 * 320.16108 * 8 7 6 10 10 N 1.34781 * 119.99713 * 140.16662 * 8 7 6 11 11 C 1.46491 * 120.00256 * 4.50083 * 10 8 7 12 12 C 1.46508 * 119.99449 * 184.50271 * 10 8 7 13 13 H 1.09000 * 109.47062 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46787 * 120.00263 * 12 10 8 15 15 C 1.50699 * 109.46873 * 239.99594 * 12 10 8 16 16 H 1.08000 * 120.00075 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99729 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99891 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99853 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47076 * 60.00325 * 19 17 15 21 21 H 1.48505 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47007 * 300.00149 * 19 17 15 23 23 C 1.39728 * 119.82341 * 0.27136 * 7 6 4 24 24 C 1.37709 * 119.91264 * 359.42475 * 23 7 6 25 25 C 1.50697 * 119.95700 * 180.27714 * 24 23 7 26 26 H 1.09000 * 109.46926 * 59.99639 * 1 2 3 27 27 H 1.08998 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46827 * 299.99783 * 1 2 3 29 29 H 1.09003 * 109.47067 * 270.02259 * 5 4 3 30 30 H 1.09006 * 109.47529 * 30.01506 * 5 4 3 31 31 H 1.08999 * 109.47653 * 150.01860 * 5 4 3 32 32 H 1.08004 * 120.04576 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46823 * 91.96808 * 11 10 8 34 34 H 1.09000 * 109.47598 * 331.97115 * 11 10 8 35 35 H 1.09004 * 109.47610 * 211.96650 * 11 10 8 36 36 H 1.08996 * 109.47451 * 59.99331 * 14 12 10 37 37 H 1.08993 * 109.47229 * 179.97438 * 14 12 10 38 38 H 1.09008 * 109.46627 * 299.99581 * 14 12 10 39 39 H 0.97004 * 119.99664 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.04687 * 179.72531 * 23 7 6 41 41 H 1.09000 * 109.47287 * 270.32203 * 25 24 23 42 42 H 1.09003 * 109.47205 * 30.32456 * 25 24 23 43 43 H 1.09006 * 109.46929 * 150.32440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 2.3598 1.8267 1.2049 5 6 2.0158 1.1529 2.5082 6 6 2.9855 3.0533 1.2092 7 6 3.3036 3.6776 0.0002 8 6 3.9738 4.9927 0.0003 9 8 3.6487 5.8406 0.8089 10 7 4.9459 5.2536 -0.8960 11 6 5.2698 4.2704 -1.9325 12 6 5.6788 6.5207 -0.8335 13 1 5.3017 7.1180 -0.0034 14 6 7.1679 6.2387 -0.6233 15 6 5.4878 7.2755 -2.1238 16 1 4.8809 6.8539 -2.9113 17 6 6.0880 8.5045 -2.2988 18 7 6.8274 9.0177 -1.3398 19 14 5.8507 9.4405 -3.8978 20 1 4.4055 9.7148 -4.1010 21 1 6.5946 10.7242 -3.8350 22 1 6.3638 8.6264 -5.0287 23 6 2.9800 3.0563 -1.2088 24 6 2.3600 1.8267 -1.2047 25 6 2.0162 1.1530 -2.5081 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.0172 1.4571 2.8219 30 1 2.0412 0.0712 2.3759 31 1 2.7400 1.4429 3.2695 32 1 3.2301 3.5324 2.1458 33 1 4.6832 4.4791 -2.8272 34 1 5.0357 3.2696 -1.5699 35 1 6.3315 4.3310 -2.1719 36 1 7.5452 5.6411 -1.4530 37 1 7.7132 7.1813 -0.5772 38 1 7.3060 5.6927 0.3100 39 1 7.2499 9.8822 -1.4631 40 1 3.2202 3.5376 -2.1454 41 1 1.0180 1.4577 -2.8224 42 1 2.7410 1.4425 -3.2691 43 1 2.0410 0.0713 -2.3756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180044059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -64.719758 kcal Electronic energy + Delta-G solvation = -23680.521544 eV Core-core repulsion = 20304.559124 eV Total energy + Delta-G solvation = -3375.962420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70021 -40.47080 -38.07795 -37.23407 -35.04757 -34.51851 -32.70320 -30.98783 -28.93932 -28.11249 -27.41424 -27.34003 -27.13769 -24.65822 -22.38597 -21.96170 -20.11664 -18.80167 -18.50055 -18.09501 -17.38358 -17.17161 -16.61997 -16.40053 -15.92868 -15.19333 -15.01573 -14.83242 -14.58186 -14.40959 -14.22390 -14.04041 -13.99649 -13.86117 -13.48441 -13.15734 -13.08028 -12.93364 -12.81756 -12.71797 -12.68031 -12.48661 -12.31416 -12.20792 -12.15361 -12.12713 -11.21794 -10.90052 -10.80628 -10.52484 -9.69050 -9.57985 -9.36802 -8.15563 -6.32651 -0.23279 0.24454 1.41454 1.44182 1.51552 1.69946 2.22215 2.40011 2.49959 2.91330 3.12313 3.55956 3.72390 3.75652 4.12638 4.25634 4.33312 4.43035 4.48276 4.52503 4.61186 4.63141 4.63626 4.71804 4.75753 4.80562 4.82128 4.85526 4.85925 4.96349 5.01601 5.12639 5.26301 5.28387 5.32464 5.43740 5.44117 5.57124 5.62723 5.63924 5.99665 6.13073 6.50534 6.71566 6.73986 7.23075 7.41443 8.88942 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.003895 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.429144 B = 7187.288616 C = 7755.421806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C 0.108 3.892 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.076 4.076 7 C -0.134 4.134 8 C 0.537 3.463 9 O -0.601 6.601 10 N -0.589 5.589 11 C 0.077 3.923 12 C 0.261 3.739 13 H 0.009 0.991 14 C -0.133 4.133 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.086 4.086 24 C -0.105 4.105 25 C -0.108 4.108 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 -21.055 -0.972 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.109 4.109 5 C -0.164 4.164 6 C -0.095 4.095 7 C -0.137 4.137 8 C 0.326 3.674 9 O -0.485 6.485 10 N -0.318 5.318 11 C -0.065 4.065 12 C 0.159 3.841 13 H 0.027 0.973 14 C -0.192 4.192 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.104 4.104 24 C -0.105 4.105 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.500 -20.635 -0.549 23.160 hybrid contribution 0.085 1.490 -0.357 1.535 sum -10.415 -19.145 -0.906 21.813 Atomic orbital electron populations 1.23236 0.76993 1.04927 1.01320 1.85883 1.21489 1.23903 1.94315 1.18596 0.97301 0.86367 0.91323 1.20297 0.99804 0.93880 0.96889 1.20738 1.02572 1.00999 0.92045 1.20957 0.97225 0.94417 0.96861 1.19890 1.03541 0.94370 0.95873 1.18934 0.80052 0.87649 0.80728 1.90700 1.65935 1.49623 1.42195 1.48157 1.34584 1.19552 1.29530 1.22151 1.02416 0.91430 0.90473 1.18610 0.88865 0.80122 0.96480 0.97283 1.21895 0.98117 1.01464 0.97704 1.21525 1.31269 1.04065 1.01013 0.92002 1.25758 0.94488 0.97937 1.00258 1.70018 1.32815 1.18607 1.34234 0.85478 0.78046 0.77777 0.79538 1.20293 1.20856 1.18495 1.21452 0.97238 0.94470 0.97263 1.20348 0.99469 0.94059 0.96652 1.20765 1.02807 1.00935 0.91936 0.92969 0.86292 0.93197 0.90062 0.89883 0.90803 0.85867 0.91701 0.89170 0.90863 0.93150 0.91048 0.96174 0.92558 0.83586 0.90074 0.89988 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.13 113.37 1.26 1.62 16 2 O -0.34 -6.49 8.47 -90.31 -0.77 -7.26 16 3 C 0.11 2.52 5.67 22.63 0.13 2.65 16 4 C -0.11 -2.70 5.89 -19.81 -0.12 -2.82 16 5 C -0.11 -1.97 9.78 71.23 0.70 -1.28 16 6 C -0.08 -2.37 9.27 22.50 0.21 -2.16 16 7 C -0.13 -4.69 5.21 -20.09 -0.10 -4.79 16 8 C 0.54 24.55 7.33 86.71 0.64 25.19 16 9 O -0.60 -33.14 16.26 -3.99 -0.06 -33.21 16 10 N -0.59 -26.54 2.75 -830.46 -2.29 -28.82 16 11 C 0.08 2.60 8.15 127.77 1.04 3.64 16 12 C 0.26 14.07 2.64 44.24 0.12 14.18 16 13 H 0.01 0.59 6.91 -2.39 -0.02 0.57 16 14 C -0.13 -6.60 8.94 71.98 0.64 -5.96 16 15 C -0.54 -29.94 8.37 25.60 0.21 -29.73 16 16 H 0.06 3.30 7.60 -2.91 -0.02 3.28 16 17 C 0.02 0.84 5.30 84.66 0.45 1.29 16 18 N -0.92 -53.59 11.32 21.45 0.24 -53.34 16 19 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 C -0.09 -2.41 7.10 22.50 0.16 -2.25 16 24 C -0.10 -2.42 5.89 -19.81 -0.12 -2.54 16 25 C -0.11 -1.75 9.78 71.23 0.70 -1.05 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.37 7.52 -2.38 -0.02 1.35 16 31 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.06 2.01 7.24 -2.38 -0.02 1.99 16 34 H 0.09 2.54 5.36 -2.39 -0.01 2.52 16 35 H 0.07 2.44 6.43 -2.39 -0.02 2.42 16 36 H 0.05 2.25 6.67 -2.39 -0.02 2.23 16 37 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 38 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.15 3.85 5.59 -2.91 -0.02 3.83 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 43 H 0.08 1.20 7.52 -2.38 -0.02 1.19 16 Total: -1.00 -72.18 348.41 6.07 -66.11 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.01 Total: 15.18 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.92 Total: -4.00 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.04 Total: -82.17 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.83 Total: -40.47 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.18 6.07 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180044059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.389 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds